mRNA_L-elsbetiae_contig707.15875.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
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Overview
Homology
BLAST of mRNA_L-elsbetiae_contig707.15875.1 vs. uniprot
Match: D8LBJ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBJ7_ECTSI) HSP 1 Score: 1043 bits (2697), Expect = 0.000e+0 Identity = 685/1105 (61.99%), Postives = 737/1105 (66.70%), Query Frame = 3
Query: 390 IPDEDEAARDVAKAMSAVRPLLERYRHRYEELTSLLARSQASASSATVEARELCRDHLQTFGRLEDGCTTLAQELGRAAAAAAAAGEKQDVLLSKSKPEFQNECPYCGGGGVEK-EAAXRXXXAADAAADADALAARHRSLVQRRRRVRSALRVLEVSESGRAALETGAAGAERAGGRSARADEAMKAIESLRGLLGEYRVGGGDAPEHTGTRSPPARPALAVPRQASCV-----------TTAAGGVAGAADGELARVARGRLEWLTRRLRAHLSSDLAGALRQVDPLAAA----AGSGEAQGGXXXXXXXRGGHRXXXXXXXXXXXXXXXXXQGPEWFLSFLLRALEAYRPLLLLFSDAARPAPTTSAAAGXXXXEARAGAGASGWEAGGVDPVAYFARGLTLLARRRLRAQLGAAAADGSLLSHTVEEALAFDRRLDEEAGYAECPARFPQQTWPRCVEVFAQDEERFELWMTSDANAAEAKLGEAAAAPGAWRAVEWQNGPTPSTPVTPSAVALCRLFWDVAERYRPLRDPLKQLRFARNIQEPVLRSVRASGEAVGAGPPPSAAAGGVTSAADGLTATWAAALGAAMLGPAQDADEDKSPIGRWRGYCLAVASCAYVCAVLRESEDDMLFAEMAE---AXXXXXXXXXXEVRDPRTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAGVVRAVGAQGSIIGPTHAISAALTTLKGAARLVRKASSSTTSGHHGIGGDTGNGDSAGTGSG----SRRPGGXXXXXXXXXXXXEAEVXXXXXXXXXXXXXXXXXXXXXXXXXXXTAAVGEWTGSVFGQEAGRYGIMLEAMVRGAVESCRDGFLWRTRSYLRAWDRGIAVVVPASAAQSSLSGRGPA---------AEASGRLGAGVELLETAVGVAGESLPPAQFHKFWTALASELDLTLVKQIVARRSEMSQDEGLQLWADLQVLMGPFDALARRRPERHFPALAEASVLLSLEKASTGPLEAR--------------GLFGTSQLRSLSSGLDAHGGGVEEAVRGGGWDGWREEGGALSPEGTQMRDMLENVGVRRLGPVEASMLLDKRLKGDRLAVLGYLSAAA 3566
+PDEDEAARDVAK MS V PLL+ Y+HR+EEL LL SQASA+SAT AREL +DHLQTFGRLE+GC L QEL AAA AAAA E + L + PE + GG + + E A + AA ++AD LAAR+RSLVQRRRR+RSALRVLEVSE GRAALE AGAE G ARA+E MKAIE LRGLLGEYR G D G RSP TT A DGELARV +GRLEWLT+RLRA LSS+LA ALRQ DPLAAA AG+G G XXXXXX GG R QGPEWFLSFLLRALEAYRPLLLL A P P A G EAR AG G G VDP+AYFARGL LLARRRLRAQLG AAAD SLLSHTVEEALAFDR LD EAGYAECPARFP QTWPRCVEVFAQ E+RFE WM SDA AA+AKL EAAA+PGAWRAV+W+NGP STPVTPSAVALCRLF DV ERYRPLRDPLKQLRFA+++QEPVLRS GEA P VTSAADGLTATWAAAL AAM+GP Q+ DKSPIGRWRGYCLA+ASCAYVCAVLRESEDDMLFA+MAE A E R R TAGV RAVG QGSIIGPTHAISAALT+LKGAAR VRK +S G+ G D+G+G AGT + GG E EV T GE+ GSVFG+EA RY +MLEAM+RGAVESCRDGFLWRTRSYLRAWDRGIAVVV A AE SGRL GVELLETA+GVA LPP QF +FWTALASELDLTLVKQIVARR EMSQDEGLQL ADL+VLMGPFD+LARRRPERHFPALAEA+VLLSLEK G AR LF SQLRSLSSGLDAHGGGVEEAVRGGGWDGWREEGGALSPEGTQMRDMLENVGVRR+GP EAS+LLDKRLKGDRLAVLGYLSAAA
Sbjct: 1 MPDEDEAARDVAKVMSVVGPLLKSYQHRHEELAGLLTASQASAASATAGARELSQDHLQTFGRLEEGCAGLRQELDVAAATAAAAAEAANSLSGTNIPEQRGS----GGSSLSRAEVATQRRLAA--VSEADTLAARYRSLVQRRRRMRSALRVLEVSEKGRAALE---AGAETRGQLGARAEETMKAIECLRGLLGEYRDGSSD-----GARSPSXXXXXXXXXXXXXXXXXXXXXXXXPTTTA-------DGELARVTQGRLEWLTQRLRAQLSSELAAALRQADPLAAAPVKGAGTGNGTRGGXXXXXXFGGRRGTTEGRAGSR-------QGPEWFLSFLLRALEAYRPLLLLL---ALPPP----AEGAPELEARE-AGRGG---GSVDPLAYFARGLALLARRRLRAQLGEAAADESLLSHTVEEALAFDRCLDREAGYAECPARFPHQTWPRCVEVFAQGEQRFERWMESDAKAAKAKLAEAAASPGAWRAVDWKNGPRSSTPVTPSAVALCRLFSDVTERYRPLRDPLKQLRFAKHVQEPVLRSASGGGEATKGAPXXXXXXXXVTSAADGLTATWAAALEAAMVGPGQEDGGDKSPIGRWRGYCLALASCAYVCAVLRESEDDMLFADMAETAAAAWAAAREVSGEGRAARPSSSLGSVGNVVGAAVGGVSHAVTELATTAETA--TAGVARAVGVQGSIIGPTHAISAALTSLKGAARRVRKGAS----GNRNNGTDSGSG-GAGTAASMIVEEEGDGGVRDDGSDEGVAGEVEVGDGGFVGDATTATEKREAPAAAD----TVVGGEFEGSVFGEEARRYEVMLEAMLRGAVESCRDGFLWRTRSYLRAWDRGIAVVVRAXXXXXXXXXXXXXXXXXXXXXXAEPSGRLCEGVELLETALGVAEGCLPPGQFQQFWTALASELDLTLVKQIVARRVEMSQDEGLQLLADLKVLMGPFDSLARRRPERHFPALAEAAVLLSLEK--DGRTHARKGMNTTKRTLHIEGSLFAQSQLRSLSSGLDAHGGGVEEAVRGGGWDGWREEGGALSPEGTQMRDMLENVGVRRMGPAEASILLDKRLKGDRLAVLGYLSAAA 1053
BLAST of mRNA_L-elsbetiae_contig707.15875.1 vs. uniprot
Match: A0A6H5JXK1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXK1_9PHAE) HSP 1 Score: 464 bits (1193), Expect = 4.990e-147 Identity = 355/574 (61.85%), Postives = 380/574 (66.20%), Query Frame = 3
Query: 2115 MLGPAQDADEDKSPIGRWRGYCLAVASCAYVCAVLRESEDDMLFAEMAEAXXXXXXXXXXEVRDPRTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-TAGVVRAVGAQGSIIGPTHAISAALTTLKGAARLVRKASSSTTSGHHGIGGDTGNGDSAGTGSGSRRPGGXXXXXXXXXXXXEAEVXXXXXXXXXXXXXXXXXXXXXXXXXXX------TAAVGEWTGSVFGQEAGRYGIMLEAMVRGAVESCRDGFLWRTRSYLRAWDRGIAVVVPASAAQSSLSGRGP---------AAEASGRLGAGVELLETAVGVAGESLPPAQFHKFWTALASELDLTLVKQIVARRSEMSQDEGLQLWADLQVLMGPFDALARRRPERHFPALAEASVLLSLEKASTGPLEARGLFGTSQLRSLSSGLDAHGGGVEEAVRGGGWDGWREEGGALSPEGTQMRDMLENVGVRRLGPVEASMLLDKRLKGDRLAVLGYLSAAADTSND--------------GGRAGIAQGEGGAFGPSVGDRG-----GGEVVGGGGLAAAAE--APRETVISSFG 3725
M+GP Q+ DKSPIGRWRGYCL +ASCAYVCAVLRESEDDMLFA+MAEA + R TAGV RAVG QGSIIGPTHAISAALT+LKGAAR VRK +S G+ NG AGT XXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXX T GE+ GSVFG+EA RY +MLEAM+R AVESC DGFLWRTRSYLRAWDRGIAVVV AS AAE SGRL GV+LLETA+GVA LPP QF +FWTALAS LDLTLVKQIVARR EM+QDEGLQL ADL+VLMGPFD+LARRRPERHFPALAEA+VLLSLEK SQLRSLSSGLDAHGG VEEAVRGGGWDGWREEGGALSPEGTQMRDMLENVGVRR+GP EAS+LLDKRLKGDRLAVLGYLSAAA + G G+A PS GD G G VGGGG+ + E APRE V SSFG
Sbjct: 1 MVGPGQEDGGDKSPIGRWRGYCLVLASCAYVCAVLRESEDDMLFADMAEATAAAWAAAREVSGEGRAARPSSSLGSVGNVVGAAVGGVSHAVTELATTAETATAGVARAVGVQGSIIGPTHAISAALTSLKGAARRVRKGAS----------GNRNNG--AGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVVGGEFEGSVFGEEARRYEVMLEAMLRSAVESCLDGFLWRTRSYLRAWDRGIAVVVHASXXXXXXXXXXXXXXXXXXSFAAEPSGRLCEGVQLLETALGVAEGCLPPGQFQQFWTALASGLDLTLVKQIVARRVEMTQDEGLQLLADLKVLMGPFDSLARRRPERHFPALAEAAVLLSLEK--------------SQLRSLSSGLDAHGGSVEEAVRGGGWDGWREEGGALSPEGTQMRDMLENVGVRRMGPAEASILLDKRLKGDRLAVLGYLSAAAGKNXXXXXXSNPAVAGFTVAGVVGVA--------PSGGDGGVDGALTGPSVGGGGVGVSREGAAPREAV-SSFG 539
BLAST of mRNA_L-elsbetiae_contig707.15875.1 vs. uniprot
Match: A0A6H5JNY6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNY6_9PHAE) HSP 1 Score: 451 bits (1160), Expect = 1.200e-141 Identity = 320/598 (53.51%), Postives = 354/598 (59.20%), Query Frame = 3
Query: 258 MNEPRESRDTDAAAGFGPVPSVNEILDGLAVEAGLLPGSFDDTFIPDEDEAARDVAKAMSAVRPLLERYRHRYEELTSLLARSQASASSATVEARELCRDHLQTFGRLEDGCTTLAQELGRAAAAAAAAGEKQDVLLSKSKPEFQNECPYCGGGGVEK----EAAXRXXXAADAAADADALAARHRSLVQRRRRVRSALRVLEVSESGRAALETGAAGAERAGGRSARADEAMKAIESLRGLLGEYRVGGGDAPEHTGTRSPPARPALAVPRQASC-----------VTTAAGGVAGAADGELARVARGRLEWLTRRLRAHLSSDLAGALRQVDPLAAAAGSG--------------------------------------------EAQGGXXXXXXXRGGHRXXXXXXXXXXXXXXXXXQG---------PEWFLSFLLRALEAYRPLLLLFSDAARPAPTTSAAAGXXXXEARAGAGASGWEAGGVDPVAYFARGLTLLARRRLRAQLGAAAADGSLLSHTVEEALAFDRRLDEEAGYAECPARFPQQTWPRCVEVFAQDEERFELWMTSDANAAEAKLGEAAAAPGAWRAVEWQ 1847
M+ PRE D AAA VPSV EILD +AVEAGLL +F D PDE+EAARDVAK MS VRPLLE Y+HR+EEL LL SQASA+SAT +AREL RDHL+TFGRLE+GC L Q+L AAA AAAA E + L + PE + G GV E A + AA ++AD LAAR+RSLVQRRRR+RSALRVLEVSE GRAALE AGAE G ARA+E MKAIE LRGLLGE+R D G RSP TTAA GELARV +GRLEWL +RLRA LSS+LA ALRQ DPLAAA G G A GG +G PEWFLSFLLRALEAYRPLLLL + RPA G EAR +GW G VDP+AYFARGL LLARRRLRAQLGA AAD SLLSHTVEEALAFDR LD EAGYAECPARFP+QTWPRCVEVFAQ E+RFE WM SDA AA+AKL EA A+PGAWRAV+W+
Sbjct: 1 MSSPREPGDAVAAADV--VPSVKEILDMVAVEAGLLGSAFYDETTPDEEEAARDVAKVMSVVRPLLESYQHRHEELAGLLTASQASAASATADARELSRDHLKTFGRLEEGCAGLRQKLDVAAATAAAA-EAANSLSGTNIPEQR-------GSGVSSLSRAEVATQRRLAA--VSEADTLAARYRSLVQRRRRMRSALRVLEVSEKGRAALE---AGAESRGQLGARAEETMKAIECLRGLLGEFRGSSSD-----GARSPXXXXXXXXXXXXXXXXXXXXXXXXXATTAA-------YGELARVTQGRLEWLRQRLRAQLSSELAAALRQADPLAAAPGKGAGTVNSRARVPPKMLAATTRLVGLQFGGSPRPNPPSPVGGSVVRRASGGSGGAAGNGDSVWALDGLLEPVAVRFRFHFEGERPTNRVDRPEWFLSFLLRALEAYRPLLLLL-ELPRPAE------GAPELEARE----AGWGGGSVDPLAYFARGLALLARRRLRAQLGAVAADESLLSHTVEEALAFDRCLDREAGYAECPARFPRQTWPRCVEVFAQGEQRFERWMESDAKAAKAKLAEAVASPGAWRAVDWK 560
BLAST of mRNA_L-elsbetiae_contig707.15875.1 vs. uniprot
Match: A0A4D9D6Y1_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D6Y1_9STRA) HSP 1 Score: 83.6 bits (205), Expect = 2.050e-12 Identity = 73/208 (35.10%), Postives = 92/208 (44.23%), Query Frame = 3
Query: 1350 PEWFLSFLLRALEAYRPLLLLFSDAARPAPTTSAAAGXXXXEARAGAGASGWEAGGVDP---VAYFARGLTLLARRRLRAQLGAAAADGSLLSHTVEEALAFDRRLDEEAGYAEC--PA------RFPQQTWPRCVEVFAQDEERFELWMTSDANAAEAKLGEAAAAPGAWRAVEWQNGPTPSTPVTPSAVALCRLFWDVAERYRPLR 1940
PEW +FLLRAL+ + L +DA G E A P +A+FAR L L ARR++RA L + + L+ EEALAFD+ LDEE GY C PA +Q WPR +V A +R E W +A L APGAW A + P T +A A L + ERY PLR
Sbjct: 328 PEWVFAFLLRALQLSKSAL---TDA-----RAEECVGKFMPEVSA-----------CMPHPLLAFFARDLALAARRKMRAMLLGGSTEDRALARLGEEALAFDKALDEETGYHRCASPAGVGVVGMVQRQGWPRATDVLAASRQRLERWAEVEAAWVLGSLSRGCEAPGAWDAAPGLE--EQAAPPTRAAQAFAGLVSTLTERYGPLR 514 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig707.15875.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig707.15875.1 >prot_L-elsbetiae_contig707.15875.1 ID=prot_L-elsbetiae_contig707.15875.1|Name=mRNA_L-elsbetiae_contig707.15875.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=1157bp MNEPRESRDTDAAAGFGPVPSVNEILDGLAVEAGLLPGSFDDTFIPDEDEback to top mRNA from alignment at L-elsbetiae_contig707:9969..26350- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig707.15875.1 ID=mRNA_L-elsbetiae_contig707.15875.1|Name=mRNA_L-elsbetiae_contig707.15875.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=16382bp|location=Sequence derived from alignment at L-elsbetiae_contig707:9969..26350- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig707:9969..26350- >mRNA_L-elsbetiae_contig707.15875.1 ID=mRNA_L-elsbetiae_contig707.15875.1|Name=mRNA_L-elsbetiae_contig707.15875.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=6942bp|location=Sequence derived from alignment at L-elsbetiae_contig707:9969..26350- (Laminarionema elsbetiae ELsaHSoW15)back to top |