mRNA_L-elsbetiae_contig7067.15872.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7067.15872.1
Unique NamemRNA_L-elsbetiae_contig7067.15872.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7067.15872.1 vs. uniprot
Match: A0A6H5KXW1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KXW1_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 2.690e-21
Identity = 50/93 (53.76%), Postives = 62/93 (66.67%), Query Frame = 2 
Query:    2 TRPVVVLTNLRGAWKIIWLGGARLPGAVARRGEGRDAQATAAGGQEQQEEEMDVFVWRLSTADAASVVRSMLNEETVSWDGQVSWGPRRSTAA 280
            TRPVVVLT+L+ +WK++WLGGAR   A A      +     A       +E+D+FVWR+S  DA SVVRSML+EE V WDGQVSW PR+  AA
Sbjct:  355 TRPVVVLTDLQASWKLLWLGGARSDLAPAGEAAAAETAFHHAAATTVDGDEVDIFVWRMSPRDAISVVRSMLDEEAVGWDGQVSWAPRQGDAA 447
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7067.15872.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KXW1_9PHAE2.690e-2153.76Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7067contigL-elsbetiae_contig7067:7335..8474 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size313
Cds size312
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816784.3963487-CDS-L-elsbetiae_contig7067:7334..74351622816784.3963487-CDS-L-elsbetiae_contig7067:7334..7435Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7067 7335..7435 +
1691683810.8546937-CDS-L-elsbetiae_contig7067:7334..74351691683810.8546937-CDS-L-elsbetiae_contig7067:7334..7435Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7067 7335..7435 +
1622816784.4123127-CDS-L-elsbetiae_contig7067:8262..84731622816784.4123127-CDS-L-elsbetiae_contig7067:8262..8473Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7067 8263..8473 +
1691683810.8652246-CDS-L-elsbetiae_contig7067:8262..84731691683810.8652246-CDS-L-elsbetiae_contig7067:8262..8473Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7067 8263..8473 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7067.15872.1prot_L-elsbetiae_contig7067.15872.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7067 7335..8473 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7067.15872.1

>prot_L-elsbetiae_contig7067.15872.1 ID=prot_L-elsbetiae_contig7067.15872.1|Name=mRNA_L-elsbetiae_contig7067.15872.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=104bp
DPARGGADQPSRCLEDHLARRGAATRCRRTARRRERCAGDSSGGAGAAGG
GDGCVCLEAEHGRRGVGCPIDAQRGDRLVGRAGLVGAPSIHRRRRREGVA
RLAR
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mRNA from alignment at L-elsbetiae_contig7067:7335..8474+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7067.15872.1 ID=mRNA_L-elsbetiae_contig7067.15872.1|Name=mRNA_L-elsbetiae_contig7067.15872.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1140bp|location=Sequence derived from alignment at L-elsbetiae_contig7067:7335..8474+ (Laminarionema elsbetiae ELsaHSoW15)
GACCCGGCCCGTGGTGGTGCTGACCAACCTTCGCGGTGCCTGGAAGATCA
TCTGGCTCGGAGGGGCGCGGCTACCAGGTGCCGTCGCACGGCGAGGAGAA
GGTGGGCGGGCGGTCCGGGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
CGCGCGCGCGCACGGCATGCAGGGTTGTTGTTTACCGACTTGTGTATTGT
GCCGCGTTTCTCATATTTCGCGAAAATATAGGTATATATGTGTATCCATA
TGTGATGTGCCATTTTTCCAGTTTTGTGCTGGTCATCACTCACTCAATGC
CATGACGTTGTTCTCGGCGCAGTTTTTTTTGTTGGCGTCGTTTTTTTTTC
TTCTTTTTCTCACGAATACATGCATACCCACACACGTTTACCAGGGCTCG
GACGAGGGTCCGAACAAGTTTAGAAGCAGCGCACCATTGCTACGTAGTGA
CCGCAGTGGTATTTGTTTATCTTTCTACCAGTGACTACTGCTGTTTCTCT
CTTTTTCTTTGGCGATTTTGGTTTTACCTTGTGGATGAAGGAACGCGAGA
AGATAGACCGGTCACAGATGGGACGACGTTTTTTGTTTGAGGCCTTTTGT
TTCGTACATGCATATGTAACACGTCTTGGGTTATCCCGTCCGCGCTCTGA
ACACCTCTGGATAACTTGTGTTGAGATCGCTTTTTTTTACTTGCTGAGGC
TAGCTTTTCTCAACAGCAGTGTCACCGTCATTGTCCGGCCGGTTTGCTCC
AAGCGGCCTCCGTGCTGGGTTACCTCAAATCGACCGGTCGAGGCAAGGCG
AACAACCCCCGAACACGACGGAGACTCGTGTAACTGACCGTGAGGTGAAC
CCCGAACACCACCGAGACTCGTGTAGCTGACCGCTTCCTTCCGTCCTGCT
TGATTGGATGTCCTCGCGCGCCCTGCAGGGAGAGATGCGCAGGCGACAGC
AGCGGGGGGGCAGGAGCAGCAGGAGGAGGAGATGGATGTGTTTGTCTGGA
GGCTGAGCACGGCCGACGCGGCGTCGGTTGTCCGATCGATGCTCAACGAG
GAGACCGTCTCGTGGGACGGGCAGGTCTCGTGGGGGCCCCGTCGATCCAC
CGCCGCCGCCGCCGGGAGGGGGTGGCTCGACTTGCCCGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7067:7335..8474+

>mRNA_L-elsbetiae_contig7067.15872.1 ID=mRNA_L-elsbetiae_contig7067.15872.1|Name=mRNA_L-elsbetiae_contig7067.15872.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=624bp|location=Sequence derived from alignment at L-elsbetiae_contig7067:7335..8474+ (Laminarionema elsbetiae ELsaHSoW15)
GACCCGGCCCGTGGTGGTGCTGACCAACCTTCGCGGTGCCTGGAAGATCA
TCTGGCTCGGAGGGGCGCGGCTACCAGGTGCCGTCGCACGGCGAGGAGAA
GGACCCGGCCCGTGGTGGTGCTGACCAACCTTCGCGGTGCCTGGAAGATC
ATCTGGCTCGGAGGGGCGCGGCTACCAGGTGCCGTCGCACGGCGAGGAGA
AGGGAGAGATGCGCAGGCGACAGCAGCGGGGGGGCAGGAGCAGCAGGAGG
AGGAGATGGATGTGTTTGTCTGGAGGCTGAGCACGGCCGACGCGGCGTCG
GTTGTCCGATCGATGCTCAACGAGGAGACCGTCTCGTGGGACGGGCAGGT
CTCGTGGGGGCCCCGTCGATCCACCGCCGCCGCCGCCGGGAGGGGGTGGC
TCGACTTGCCCGGGGAGAGATGCGCAGGCGACAGCAGCGGGGGGGCAGGA
GCAGCAGGAGGAGGAGATGGATGTGTTTGTCTGGAGGCTGAGCACGGCCG
ACGCGGCGTCGGTTGTCCGATCGATGCTCAACGAGGAGACCGTCTCGTGG
GACGGGCAGGTCTCGTGGGGGCCCCGTCGATCCACCGCCGCCGCCGCCGG
GAGGGGGTGGCTCGACTTGCCCGG
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