mRNA_L-elsbetiae_contig7062.15868.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7062.15868.1
Unique NamemRNA_L-elsbetiae_contig7062.15868.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig7062.15868.1 vs. uniprot
Match: A0A6H5J981_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J981_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 9.950e-26
Identity = 70/137 (51.09%), Postives = 84/137 (61.31%), Query Frame = -1 
Query:    1 ASCWRLHVGLLLDILRRIPAAADDSVAMVNHVALPCLETVAALCLNSVDYPALREEEEAG-------------------------DEVVRAS-GGRVEDVLLCEILHASAGSWTPLASANRGSPGGPGAGAAGVQWI 333
            A+CWRLHVGLLL+ILRRIPAAAD S+AMV HV LPCL+TVAALCL+ VDYP LR++E                            D    AS GGRVEDV+L E+L ASA + T L+SA+    GG G+    V W+
Sbjct: 6802 AACWRLHVGLLLEILRRIPAAADASLAMVKHVVLPCLDTVAALCLDGVDYPDLRKKEAXXXXXXXXXXXXXXXXXSGASPSVSDVDVATPASDGGRVEDVVLGEVLRASADART-LSSASATKTGG-GSFCCRVGWV 6936
[Close]
BLAST of mRNA_L-elsbetiae_contig7062.15868.1 vs. uniprot
Match: D8LLX0_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLX0_ECTSI)

HSP 1 Score: 108 bits (270), Expect = 4.690e-25
Identity = 69/142 (48.59%), Postives = 80/142 (56.34%), Query Frame = -1 
Query:   34 EEGVTAGVASCWRLHVGLLLDILRRIPAAADDSVAMVNHVALPCLETVAALCLNSVDYPALREEEEAGD-------------------------------EVVR--ASGGRVEDVLLCEILHASAGSWT-PLASANRGSPGG 357
            EE      A+CWRLHVGLLL+ILRR+PAAAD S+AMV HV LPCL+TVAALCL+ VDYP LRE+E A                                 EV    + GGRVEDV+L E+L ASA +   P ASA     GG
Sbjct: 5984 EEPEGREAAACWRLHVGLLLEILRRMPAAADASLAMVKHVVLPCLDTVAALCLDGVDYPDLREKEGAPXXXXXXXXXXXXXXXXXXXXXXSGASPSLPDVEVATPASDGGRVEDVVLDEVLRASADAQALPSASATMTGGGG 6125
[Close]
BLAST of mRNA_L-elsbetiae_contig7062.15868.1 vs. uniprot
Match: A0A835Z9Y3_9STRA (E3 ubiquitin-protein ligase UBR4-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9Y3_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 8.660e-8
Identity = 31/69 (44.93%), Postives = 37/69 (53.62%), Query Frame = -1 
Query:  151 EEGVTAGVASCWRLHVGLLLDILRRIPAAADDSVAMVNHVALPCLETVAALCLNSVDYPALREEEEAGD 357
            E   TA    CWR H+ LL D+L        DS A+  HVALPCL+T+AA CL +   PAL      GD
Sbjct: 4949 EHNATA----CWRQHMRLLQDVLSEAATLLRDSPAVAQHVALPCLQTLAAACLKADLTPALEAPAAEGD 5013
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7062.15868.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5J981_9PHAE9.950e-2651.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LLX0_ECTSI4.690e-2548.59Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A835Z9Y3_9STRA8.660e-844.93E3 ubiquitin-protein ligase UBR4-domain-containing... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7062contigL-elsbetiae_contig7062:4084..4442 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size360
Cds size357
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816784.3245213-CDS-L-elsbetiae_contig7062:4083..44401622816784.3245213-CDS-L-elsbetiae_contig7062:4083..4440Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7062 4084..4440 +
1691683810.809251-CDS-L-elsbetiae_contig7062:4083..44401691683810.809251-CDS-L-elsbetiae_contig7062:4083..4440Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7062 4084..4440 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7062.15868.1prot_L-elsbetiae_contig7062.15868.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7062 4084..4440 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7062.15868.1

>prot_L-elsbetiae_contig7062.15868.1 ID=prot_L-elsbetiae_contig7062.15868.1|Name=mRNA_L-elsbetiae_contig7062.15868.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=119bp
DPLHPRGAGAGAAGGTAVGGGQWGPRAGGGVKDLAQQDVLHSATARSYHL
VAGFFFFPEGGVVDTVQAQRRHRLEAGQRNVVHHRDAVVRRRGYSPQDVQ
EEADVKPPARGHPGRHSLF
back to top

mRNA from alignment at L-elsbetiae_contig7062:4084..4442+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7062.15868.1 ID=mRNA_L-elsbetiae_contig7062.15868.1|Name=mRNA_L-elsbetiae_contig7062.15868.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=359bp|location=Sequence derived from alignment at L-elsbetiae_contig7062:4084..4442+ (Laminarionema elsbetiae ELsaHSoW15)
GATCCACTGCACCCCCGCGGCGCCGGCGCCGGGGCCGCCGGGGGAACCGC
GGTTGGCGGAGGCCAATGGGGTCCAAGAGCCGGCGGAGGCGTGAAGGATC
TCGCACAGCAGGACGTCCTCCACTCTGCCACCGCTCGCTCGTACCACCTC
GTCGCCGGCTTCTTCTTCTTCCCGGAGGGCGGGGTAGTCGACACTGTTCA
GGCACAGCGCCGCCACCGTCTCGAGGCAGGGCAGCGCAACGTGGTTCACC
ATCGCGACGCTGTCGTCCGCCGCCGCGGGTATTCGCCGCAGGATGTCCAG
GAGGAGGCCGACGTGAAGCCTCCAGCACGAGGCCACCCCGGCCGTCACTC
CCTCTTCCC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig7062:4084..4442+

>mRNA_L-elsbetiae_contig7062.15868.1 ID=mRNA_L-elsbetiae_contig7062.15868.1|Name=mRNA_L-elsbetiae_contig7062.15868.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=714bp|location=Sequence derived from alignment at L-elsbetiae_contig7062:4084..4442+ (Laminarionema elsbetiae ELsaHSoW15)
GATCCACTGCACCCCCGCGGCGCCGGCGCCGGGGCCGCCGGGGGAACCGC
GGTTGGCGGAGGCCAATGGGGTCCAAGAGCCGGCGGAGGCGTGAAGGATC
TCGCACAGCAGGACGTCCTCCACTCTGCCACCGCTCGCTCGTACCACCTC
GTCGCCGGCTTCTTCTTCTTCCCGGAGGGCGGGGTAGTCGACACTGTTCA
GGCACAGCGCCGCCACCGTCTCGAGGCAGGGCAGCGCAACGTGGTTCACC
ATCGCGACGCTGTCGTCCGCCGCCGCGGGTATTCGCCGCAGGATGTCCAG
GAGGAGGCCGACGTGAAGCCTCCAGCACGAGGCCACCCCGGCCGTCACTC
CCTCTTCGATCCACTGCACCCCCGCGGCGCCGGCGCCGGGGCCGCCGGGG
GAACCGCGGTTGGCGGAGGCCAATGGGGTCCAAGAGCCGGCGGAGGCGTG
AAGGATCTCGCACAGCAGGACGTCCTCCACTCTGCCACCGCTCGCTCGTA
CCACCTCGTCGCCGGCTTCTTCTTCTTCCCGGAGGGCGGGGTAGTCGACA
CTGTTCAGGCACAGCGCCGCCACCGTCTCGAGGCAGGGCAGCGCAACGTG
GTTCACCATCGCGACGCTGTCGTCCGCCGCCGCGGGTATTCGCCGCAGGA
TGTCCAGGAGGAGGCCGACGTGAAGCCTCCAGCACGAGGCCACCCCGGCC
GTCACTCCCTCTTC
back to top