mRNA_L-elsbetiae_contig7058.15861.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7058.15861.1
Unique NamemRNA_L-elsbetiae_contig7058.15861.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig7058.15861.1 vs. uniprot
Match: D8LKP8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKP8_ECTSI)

HSP 1 Score: 158 bits (400), Expect = 3.610e-43
Identity = 71/86 (82.56%), Postives = 82/86 (95.35%), Query Frame = 1
Query:    1 KVSSSEAMILGARWDREMDELLREGVLRYGAEWEDVSTHMTPHECPKEEVEKRWQMIKEDHVKGPWSPEEDALLKVLVEEYGSKKW 258
            +V+++EAMILGARWDREMDE+LREGVLRYGA+WE+VSTHM PHECPKEEVEKRWQM+K + VKGPWSPEED+LLKVLV+EYG KKW
Sbjct:   70 EVTAAEAMILGARWDREMDEMLREGVLRYGADWEEVSTHMAPHECPKEEVEKRWQMVKANPVKGPWSPEEDSLLKVLVDEYGRKKW 155          
BLAST of mRNA_L-elsbetiae_contig7058.15861.1 vs. uniprot
Match: A0A7S1XTG3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XTG3_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 5.140e-18
Identity = 38/75 (50.67%), Postives = 54/75 (72.00%), Query Frame = 1
Query:   37 RWDREMDELLREGVLRYG-AEWEDVSTHMTPHECPKEEVEKRWQMIKEDHVKGPWSPEEDALLKVLVEEYGSKKW 258
            ++  E+D++LREGVLR+G ++W  V+ H+ P+    EE  +RW  +K   VKGPWSPEEDALL+ LV+  GSK+W
Sbjct:   37 QFTEEIDQVLREGVLRFGESDWASVARHLLPYRFRPEECFQRWNKVKNRAVKGPWSPEEDALLRGLVQRLGSKRW 111          
BLAST of mRNA_L-elsbetiae_contig7058.15861.1 vs. uniprot
Match: A0A835Z962_9STRA (Homeodomain-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z962_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 6.270e-18
Identity = 42/84 (50.00%), Postives = 58/84 (69.05%), Query Frame = 1
Query:   25 ILGARWDREMDELLREGVLRYG-AEWEDVSTHMTPHECPKEEVE-----KRWQMIKEDHVKGPWSPEEDALLKVLVEEYGSKKW 258
            +L A+W ++MD+ LREGVLRYG +EW  V  HM       E+VE     +RWQ+I +  VKGPW+ EED +L+ LV++YG+KKW
Sbjct:    1 MLNAKWTKDMDDTLREGVLRYGMSEWPKVMAHMQVQSHVLEDVESLECHQRWQIICDLPVKGPWASEEDDVLRALVKQYGNKKW 84          
BLAST of mRNA_L-elsbetiae_contig7058.15861.1 vs. uniprot
Match: F0YHL4_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YHL4_AURAN)

HSP 1 Score: 73.2 bits (178), Expect = 2.140e-14
Identity = 39/83 (46.99%), Postives = 52/83 (62.65%), Query Frame = 1
Query:   40 WDREMDELLREGVLRYGAE-WEDVSTHMTP--------HECPKEEVEKRWQ-MIKEDHVKGPWSPEEDALLKVLVEEYGSKKW 258
            W  E D +LREGVLR+G   WEDVS H+ P         + P  E E RW+ +++   VKGPW PEED+LL+ LV ++G K+W
Sbjct:    1 WTEEEDAVLREGVLRFGTSAWEDVSRHLLPPVQGGPQKRQAP--ECEARWEAVVRHTAVKGPWLPEEDSLLRQLVNKFGPKRW 81          
BLAST of mRNA_L-elsbetiae_contig7058.15861.1 vs. uniprot
Match: A0A196SGZ8_BLAHN (Transcriptional activator Myb n=1 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196SGZ8_BLAHN)

HSP 1 Score: 75.1 bits (183), Expect = 6.950e-14
Identity = 38/80 (47.50%), Postives = 54/80 (67.50%), Query Frame = 1
Query:   40 WDREMDELLREGVLRYGA-EWEDV-----STHMTPHECPKEEVEKRWQMIKEDH-VKGPWSPEEDALLKVLVEEYGSKKW 258
            W RE+DE++RE V RYG+ +W  V     + H+TP +C     ++RW+ +  D  VKGPWS EEDA+L+ LVE++G KKW
Sbjct:   12 WTRELDEMIREAVARYGSNDWVKVCQKLRNQHITPEQC-----QERWETVLRDQTVKGPWSEEEDAILRSLVEKFGPKKW 86          
BLAST of mRNA_L-elsbetiae_contig7058.15861.1 vs. uniprot
Match: D8MAX1_BLAHO (Uncharacterized protein n=1 Tax=Blastocystis hominis TaxID=12968 RepID=D8MAX1_BLAHO)

HSP 1 Score: 74.7 bits (182), Expect = 9.540e-14
Identity = 35/75 (46.67%), Postives = 51/75 (68.00%), Query Frame = 1
Query:   40 WDREMDELLREGVLRYGA-EWEDVSTHMTPHECPKEEVEKRW-QMIKEDHVKGPWSPEEDALLKVLVEEYGSKKW 258
            W RE+DE++RE V RYG+ +W  V   +   +   E+ + RW Q++++  VKGPWS EED LL+ LVE++G KKW
Sbjct:   12 WTRELDEMIREAVARYGSNDWSKVCQKLRTQQITPEQCQMRWEQVLRDQTVKGPWSEEEDKLLRSLVEKHGPKKW 86          
BLAST of mRNA_L-elsbetiae_contig7058.15861.1 vs. uniprot
Match: UPI0007118188 (acyl-coenzyme a:6-aminopenicillanic-acid-acyltransferase n=1 Tax=Blastocystis sp. subtype 4 TaxID=944170 RepID=UPI0007118188)

HSP 1 Score: 74.3 bits (181), Expect = 1.340e-13
Identity = 35/75 (46.67%), Postives = 50/75 (66.67%), Query Frame = 1
Query:   40 WDREMDELLREGVLRYGA-EWEDVSTHMTPHECPKEEVEKRWQMIKEDH-VKGPWSPEEDALLKVLVEEYGSKKW 258
            W RE+DE++RE V RYG+ +W  V   +   +   E+ + RW+ +  D  VKGPWS EEDA+L+ LVE++G KKW
Sbjct:    6 WTRELDEMIREAVARYGSNDWVKVCQKLRSQQITPEQCQARWENVLRDQTVKGPWSEEEDAILRSLVEKFGPKKW 80          
BLAST of mRNA_L-elsbetiae_contig7058.15861.1 vs. uniprot
Match: A0A7S4I5Q7_9EUKA (Hypothetical protein n=2 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4I5Q7_9EUKA)

HSP 1 Score: 57.4 bits (137), Expect = 1.160e-7
Identity = 34/78 (43.59%), Postives = 46/78 (58.97%), Query Frame = 1
Query:   40 WDREMDELLREGVLRYGAE-WEDVSTHM---TPHECPKEEVEKRWQ-MIKEDHVKGPWSPEEDALLKVLVEEYGSKKW 258
            W +  DE LR  VL  GA+ W+ ++  M   T  +C       RWQ ++  + VKGPWSPEED L+K LVE+YG + W
Sbjct:   25 WTKAEDERLRNAVLDNGAKNWKKIAKRMPNRTDVQCLH-----RWQKVLNPELVKGPWSPEEDELVKQLVEKYGPRSW 97          
BLAST of mRNA_L-elsbetiae_contig7058.15861.1 vs. uniprot
Match: A0A6H5KU69_9PHAE (MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU69_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 1.250e-7
Identity = 24/31 (77.42%), Postives = 28/31 (90.32%), Query Frame = 1
Query:  166 MIKEDHVKGPWSPEEDALLKVLVEEYGSKKW 258
            M+K + VKGPWSPEED+LLKVLV+EYG KKW
Sbjct:    1 MVKANPVKGPWSPEEDSLLKVLVDEYGRKKW 31          
BLAST of mRNA_L-elsbetiae_contig7058.15861.1 vs. uniprot
Match: A0A7S3KJZ8_EUPCR (Hypothetical protein n=1 Tax=Euplotes crassus TaxID=5936 RepID=A0A7S3KJZ8_EUPCR)

HSP 1 Score: 53.9 bits (128), Expect = 1.630e-6
Identity = 29/75 (38.67%), Postives = 45/75 (60.00%), Query Frame = 1
Query:   40 WDREMDELLREGVLRY-GAEWEDVSTHMTPHECPKEEVEKRWQMIKEDH-VKGPWSPEEDALLKVLVEEYGSKKW 258
            W +E D LL+  VL+Y G  W+ ++  +  H     +   RWQ +   + +KGPW+PEED L+ +LVE+ G +KW
Sbjct:  126 WTKEEDALLKTAVLKYEGKNWKKIAECL--HGRTDVQCLHRWQKVLNPNLIKGPWTPEEDELVLLLVEKNGPQKW 198          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7058.15861.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
D8LKP8_ECTSI3.610e-4382.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S1XTG3_9STRA5.140e-1850.67Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A835Z962_9STRA6.270e-1850.00Homeodomain-like protein n=1 Tax=Tribonema minus T... [more]
F0YHL4_AURAN2.140e-1446.99Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A196SGZ8_BLAHN6.950e-1447.50Transcriptional activator Myb n=1 Tax=Blastocystis... [more]
D8MAX1_BLAHO9.540e-1446.67Uncharacterized protein n=1 Tax=Blastocystis homin... [more]
UPI00071181881.340e-1346.67acyl-coenzyme a:6-aminopenicillanic-acid-acyltrans... [more]
A0A7S4I5Q7_9EUKA1.160e-743.59Hypothetical protein n=2 Tax=Vannella sp. CB-2014 ... [more]
A0A6H5KU69_9PHAE1.250e-777.42MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
A0A7S3KJZ8_EUPCR1.630e-638.67Hypothetical protein n=1 Tax=Euplotes crassus TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7058contigL-elsbetiae_contig7058:9162..10119 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score156.4
Seed ortholog evalue5.7e-36
Seed eggNOG ortholog2880.D8LKP8
Hectar predicted targeting categoryother localisation
EggNOG free text desc.RNA polymerase II transcription regulator recruiting activity
EggNOG OGsCOG5147@1,KOG0048@2759
COG Functional cat.ADK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size261
Cds size240
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7058.15861.1prot_L-elsbetiae_contig7058.15861.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7058 9162..10098 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816783.3901043-CDS-L-elsbetiae_contig7058:9161..92641622816783.3901043-CDS-L-elsbetiae_contig7058:9161..9264Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7058 9162..9264 -
1691683810.1243925-CDS-L-elsbetiae_contig7058:9161..92641691683810.1243925-CDS-L-elsbetiae_contig7058:9161..9264Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7058 9162..9264 -
1622816783.4006126-CDS-L-elsbetiae_contig7058:9961..100981622816783.4006126-CDS-L-elsbetiae_contig7058:9961..10098Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7058 9962..10098 -
1691683810.1369925-CDS-L-elsbetiae_contig7058:9961..100981691683810.1369925-CDS-L-elsbetiae_contig7058:9961..10098Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7058 9962..10098 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816783.4128537-UTR-L-elsbetiae_contig7058:10098..101191622816783.4128537-UTR-L-elsbetiae_contig7058:10098..10119Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7058 10099..10119 -
1691683810.1463265-UTR-L-elsbetiae_contig7058:10098..101191691683810.1463265-UTR-L-elsbetiae_contig7058:10098..10119Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7058 10099..10119 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7058.15861.1

>prot_L-elsbetiae_contig7058.15861.1 ID=prot_L-elsbetiae_contig7058.15861.1|Name=mRNA_L-elsbetiae_contig7058.15861.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=80bp
MILGARWDREMDELLREGVLRYGAEWEDVSTHMTPHECPKEEVEKRWQMI
KEDHVKGPWSPEEDALLKVLVEEYGSKKW*
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mRNA from alignment at L-elsbetiae_contig7058:9162..10119-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7058.15861.1 ID=mRNA_L-elsbetiae_contig7058.15861.1|Name=mRNA_L-elsbetiae_contig7058.15861.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=958bp|location=Sequence derived from alignment at L-elsbetiae_contig7058:9162..10119- (Laminarionema elsbetiae ELsaHSoW15)
AAGGTCTCGTCCTCCGAGGCTATGATCCTAGGGGCGAGGTGGGACAGGGA GATGGACGAGCTGCTGCGGGAGGGCGTGCTGCGCTACGGGGCGGAGTGGG AGGACGTGTCGACGCACATGACGCCGCACGAGTGCCCGAAAGAGGAGGTC GAGAAAAGGTACGTACATGTCGAGAGGAGGTACACGAGTGCCCGAAAGAG GAGATCGCGAAAAGGTACTTACATGTCGAGAGGAGGTACACGAGTGCCCG AAAGAGGAGGTCGAGAAAAGATACGTACATGCCGAGAGAAGGTACAGATA CGTACACCACGGCATTTTGTTTTTTCGGAGTAGGTGGCGGTTTCACGCAC GAAAAGCACCTGCTAAATAATGTACATACATACGATACGCAGTACGACGC CTGACGACAAGGGGGTGTCGTGTGCGGGAAAAAATCGGTCTTGTGAGGGT GGGGCGGGGTGGGTTGTGGGGCTACGCGACACGGTGGTTAAGGGTGCATC GACGAGGCAATCGGGCTAGTGCTGAACAGCTGTTGCGTTACGGCAGCTCC AGACTTGATGTCGATGCTGTGGTGGTAAAAAAAGGAGTGGTCGAGACGCT GATGACGACGATGATTGTGATGGCAGAACGAATGTGGTACTGAATGCTTC GCTGTTTGAGGGCCAGGCTTGGCGGTAATACCCGCATACCCGCAGTGATG GCATGGGAAGAAATTTGGTGCTCCATGCATTGGATCAGCGCGGACAGAGG AAGGCGCTGAGTAGCAAGCAGAACAGTTTTTAACGTGACAACAAACAATA GCAACAACAACAACAACAACAACAACAACAACAACAACAACCAACTATCC GACAGGTGGCAGATGATAAAGGAAGACCACGTGAAAGGGCCGTGGTCTCC CGAAGAGGACGCGCTGCTCAAGGTTCTTGTGGAGGAGTACGGCAGCAAGA AGTGGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7058:9162..10119-

>mRNA_L-elsbetiae_contig7058.15861.1 ID=mRNA_L-elsbetiae_contig7058.15861.1|Name=mRNA_L-elsbetiae_contig7058.15861.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=480bp|location=Sequence derived from alignment at L-elsbetiae_contig7058:9162..10119- (Laminarionema elsbetiae ELsaHSoW15)
ATGATCCTAGGGGCGAGGTGGGACAGGGAGATGGACGAGCTGCTGCGGGA
GGGCGTGCTGCGCTACGGGGCGGAGTGGGAGGACGTGTCGACGCACATGA
CGCCGCACGAGTGCCCGAAAGAGGAGGTCGAGAAAAGATGATCCTAGGGG
CGAGGTGGGACAGGGAGATGGACGAGCTGCTGCGGGAGGGCGTGCTGCGC
TACGGGGCGGAGTGGGAGGACGTGTCGACGCACATGACGCCGCACGAGTG
CCCGAAAGAGGAGGTCGAGAAAAGGTGGCAGATGATAAAGGAAGACCACG
TGAAAGGGCCGTGGTCTCCCGAAGAGGACGCGCTGCTCAAGGTTCTTGTG
GAGGAGTACGGCAGCAAGAAGTGGTGAGTGGCAGATGATAAAGGAAGACC
ACGTGAAAGGGCCGTGGTCTCCCGAAGAGGACGCGCTGCTCAAGGTTCTT
GTGGAGGAGTACGGCAGCAAGAAGTGGTGA
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