mRNA_L-elsbetiae_contig7051.15854.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7051.15854.1
Unique NamemRNA_L-elsbetiae_contig7051.15854.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7051.15854.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7051contigL-elsbetiae_contig7051:5215..5555 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size341
Cds size318
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816782.8829722-UTR-L-elsbetiae_contig7051:5214..52371622816782.8829722-UTR-L-elsbetiae_contig7051:5214..5237Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7051 5215..5237 +
1691683809.724924-UTR-L-elsbetiae_contig7051:5214..52371691683809.724924-UTR-L-elsbetiae_contig7051:5214..5237Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7051 5215..5237 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816782.893006-CDS-L-elsbetiae_contig7051:5237..55551622816782.893006-CDS-L-elsbetiae_contig7051:5237..5555Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7051 5238..5555 +
1691683809.7365885-CDS-L-elsbetiae_contig7051:5237..55551691683809.7365885-CDS-L-elsbetiae_contig7051:5237..5555Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7051 5238..5555 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7051.15854.1prot_L-elsbetiae_contig7051.15854.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7051 5238..5555 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7051.15854.1

>prot_L-elsbetiae_contig7051.15854.1 ID=prot_L-elsbetiae_contig7051.15854.1|Name=mRNA_L-elsbetiae_contig7051.15854.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=106bp
MALHVCPKLGNNSRGIFARYSCVRFGVTPRDHHKSKASRVYVHPYRGISL
RDGALGRFLRQHLKALASWWATPPASTARMKKIELFFKICIFIWCAGFLY
TASLPR
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mRNA from alignment at L-elsbetiae_contig7051:5215..5555+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7051.15854.1 ID=mRNA_L-elsbetiae_contig7051.15854.1|Name=mRNA_L-elsbetiae_contig7051.15854.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=341bp|location=Sequence derived from alignment at L-elsbetiae_contig7051:5215..5555+ (Laminarionema elsbetiae ELsaHSoW15)
GGCTTGCACGTTGGGGCTTGAATATGGCCTTGCACGTTTGTCCTAAACTT
GGGAATAACTCCCGAGGCATCTTCGCAAGATATTCTTGCGTTCGCTTCGG
GGTGACACCCAGGGATCATCACAAATCAAAAGCCAGTCGCGTGTATGTGC
ACCCCTATCGTGGCATATCTCTGCGGGATGGAGCCCTTGGGCGTTTTTTG
CGTCAGCACCTGAAGGCTCTCGCCTCTTGGTGGGCGACACCACCGGCATC
TACAGCCAGGATGAAAAAAATCGAGCTGTTCTTTAAGATCTGCATCTTCA
TCTGGTGCGCCGGCTTCCTGTACACAGCCAGCCTGCCCCGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7051:5215..5555+

>mRNA_L-elsbetiae_contig7051.15854.1 ID=mRNA_L-elsbetiae_contig7051.15854.1|Name=mRNA_L-elsbetiae_contig7051.15854.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=636bp|location=Sequence derived from alignment at L-elsbetiae_contig7051:5215..5555+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCCTTGCACGTTTGTCCTAAACTTGGGAATAACTCCCGAGGCATCTT
CGCAAGATATTCTTGCGTTCGCTTCGGGGTGACACCCAGGGATCATCACA
AATCAAAAGCCAGTCGCGTGTATGTGCACCCCTATCGTGGCATATCTCTG
CGGGATGGAGCCCTTGGGCGTTTTTTGCGTCAGCACCTGAAGGCTCTCGC
CTCTTGGTGGGCGACACCACCGGCATCTACAGCCAGGATGAAAAAAATCG
AGCTGTTCTTTAAGATCTGCATCTTCATCTGGTGCGCCGGCTTCCTGTAC
ACAGCCAGCCTGCCCCGCATGGCCTTGCACGTTTGTCCTAAACTTGGGAA
TAACTCCCGAGGCATCTTCGCAAGATATTCTTGCGTTCGCTTCGGGGTGA
CACCCAGGGATCATCACAAATCAAAAGCCAGTCGCGTGTATGTGCACCCC
TATCGTGGCATATCTCTGCGGGATGGAGCCCTTGGGCGTTTTTTGCGTCA
GCACCTGAAGGCTCTCGCCTCTTGGTGGGCGACACCACCGGCATCTACAG
CCAGGATGAAAAAAATCGAGCTGTTCTTTAAGATCTGCATCTTCATCTGG
TGCGCCGGCTTCCTGTACACAGCCAGCCTGCCCCGC
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