mRNA_L-elsbetiae_contig7051.15855.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7051.15855.1
Unique NamemRNA_L-elsbetiae_contig7051.15855.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7051.15855.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7051contigL-elsbetiae_contig7051:5597..6772 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons3
Model size299
Cds size159
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7051.15855.1prot_L-elsbetiae_contig7051.15855.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7051 6397..6772 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816782.8201694-UTR-L-elsbetiae_contig7051:5596..56391622816782.8201694-UTR-L-elsbetiae_contig7051:5596..5639Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7051 5597..5639 +
1691683809.6661942-UTR-L-elsbetiae_contig7051:5596..56391691683809.6661942-UTR-L-elsbetiae_contig7051:5596..5639Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7051 5597..5639 +
1622816782.832642-UTR-L-elsbetiae_contig7051:6300..63961622816782.832642-UTR-L-elsbetiae_contig7051:6300..6396Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7051 6301..6396 +
1691683809.6822417-UTR-L-elsbetiae_contig7051:6300..63961691683809.6822417-UTR-L-elsbetiae_contig7051:6300..6396Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7051 6301..6396 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816782.8441575-CDS-L-elsbetiae_contig7051:6396..64341622816782.8441575-CDS-L-elsbetiae_contig7051:6396..6434Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7051 6397..6434 +
1691683809.6998148-CDS-L-elsbetiae_contig7051:6396..64341691683809.6998148-CDS-L-elsbetiae_contig7051:6396..6434Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7051 6397..6434 +
1622816782.854975-CDS-L-elsbetiae_contig7051:6651..67721622816782.854975-CDS-L-elsbetiae_contig7051:6651..6772Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7051 6652..6772 +
1691683809.7139645-CDS-L-elsbetiae_contig7051:6651..67721691683809.7139645-CDS-L-elsbetiae_contig7051:6651..6772Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7051 6652..6772 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7051.15855.1

>prot_L-elsbetiae_contig7051.15855.1 ID=prot_L-elsbetiae_contig7051.15855.1|Name=mRNA_L-elsbetiae_contig7051.15855.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=53bp
MLFVLVLAAVYSIPLKESKNGVPASRFNHPVFKMLQRYFNFSTIFDNGPN
KKS
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mRNA from alignment at L-elsbetiae_contig7051:5597..6772+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7051.15855.1 ID=mRNA_L-elsbetiae_contig7051.15855.1|Name=mRNA_L-elsbetiae_contig7051.15855.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1176bp|location=Sequence derived from alignment at L-elsbetiae_contig7051:5597..6772+ (Laminarionema elsbetiae ELsaHSoW15)
CACCTACTGACAGCGCCTTCTGACGGTCATTGTTCTGTGGTTGGTAAGAG
ACAAACAAAATAAATGATAGTGTGATGCATTGTGGGAATAAGTTATAAGT
CCGTGCACAACAATTTTTCCAAATACCTCTAGGCGGGGATGGCAACGTTT
CTCTGCACACAGGTGGTTGTTGGTACCGGCAAAACGTATTGTCTCCAGGC
GCATCTCGTGACGGAGAGAGTTTGTTTTTTCCTACACTTGTCAATCGCAC
GGACCCCATAGATAGTAGATTGGTAATCCAGTAGATACTACGCTCTGCTG
GTGTCGGTGTCAATTGCAAACAAGCCCCTCTGCCATCACACGCCACCGCT
GCCATCTAAGCAAGCACGTTAACCGCAACAACGACGACAACGACAACAAC
AGCAATAACAGCAACGACGACGAAAGCAATGCACTCTCGCAGACCCTTCA
AATATTATTTTATTGGCATGCGCCTTCGAACACATCCGCAAACAAAAGCA
GTTGGTAATCAAAACAATAGTAGTCTTGACCTCAAGGTTGGTCTTAAAAT
AGACAACGTTTCGACATCCATGTTAGTTATCGCCATGACTGACTCCGTGT
TCGAAAAAGTATGCATGTAGAGCTCGTTCCCATCACCGCCCCCCTCTCTG
CGTCACCCCTTCCCTCGTCGCTGTGTCTGCTACCTGCATATTTCGCACGA
AAAGATATCCGGCGGAGCTACTATCTTGTATCTGTCTTTGGGCACTTACT
CAGCCTTAGGAGTTTGGTTTTACCGCGGCTCGCCTGAGGGATGCGTCGCA
ATGCTTTTCGTCCTGGTGCTGGCAGCGGTCTACAGCATGTGAGTGCTTTT
AACCTCGCCCTACCCCCCACCGTTCGTCGAAAACAACCCCCTATCCATGC
ATCAGAAAGTGGCCAAGCTAGAGTGCATTTTAGTGTTTTGGGATTTTTTG
GGGATAAATTTAGTTTGAAGAATACACTAAAACGTACCTTACATATGTTT
CTTCCCCTGCGCCAAATGTTCCGTGTTTACCGGATATATATGTATGTGTC
TCCAGCCCGTTGAAAGAGAGCAAGAACGGCGTGCCGGCGAGCCGATTCAA
CCACCCGGTTTTCAAGATGCTGCAGCGCTACTTCAATTTCTCGACCATAT
TTGACAACGGCCCCAACAAGAAGTCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7051:5597..6772+

>mRNA_L-elsbetiae_contig7051.15855.1 ID=mRNA_L-elsbetiae_contig7051.15855.1|Name=mRNA_L-elsbetiae_contig7051.15855.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=318bp|location=Sequence derived from alignment at L-elsbetiae_contig7051:5597..6772+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCTTTTCGTCCTGGTGCTGGCAGCGGTCTACAGCATATGCTTTTCGTC
CTGGTGCTGGCAGCGGTCTACAGCATCCCGTTGAAAGAGAGCAAGAACGG
CGTGCCGGCGAGCCGATTCAACCACCCGGTTTTCAAGATGCTGCAGCGCT
ACTTCAATTTCTCGACCATATTTGACAACGGCCCCAACAAGAAGTCCCCC
GTTGAAAGAGAGCAAGAACGGCGTGCCGGCGAGCCGATTCAACCACCCGG
TTTTCAAGATGCTGCAGCGCTACTTCAATTTCTCGACCATATTTGACAAC
GGCCCCAACAAGAAGTCC
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