mRNA_L-elsbetiae_contig705.15849.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig705.15849.1
Unique NamemRNA_L-elsbetiae_contig705.15849.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig705.15849.1 vs. uniprot
Match: D7G0Q5_ECTSI (Hypothetical leucine rich repeat calcium binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0Q5_ECTSI)

HSP 1 Score: 160 bits (404), Expect = 7.120e-44
Identity = 75/78 (96.15%), Postives = 77/78 (98.72%), Query Frame = 1
Query:    1 ASNFVKHMKTNKTLTYLDLSHNLIGSQESINYVRPEFYTGAEALADWISTGSCPLKYLDISWNTIRLDSAVYFGNAVA 234
            ASNFVKHMK NKTLTYLDLSHNLIGSQESINYVRPEFYTGAEALADW+STGSCPLKYLD+SWNTIRLDSAVYFGNAVA
Sbjct:  620 ASNFVKHMKANKTLTYLDLSHNLIGSQESINYVRPEFYTGAEALADWVSTGSCPLKYLDVSWNTIRLDSAVYFGNAVA 697          
BLAST of mRNA_L-elsbetiae_contig705.15849.1 vs. uniprot
Match: A0A6H5J9E0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9E0_9PHAE)

HSP 1 Score: 137 bits (345), Expect = 1.830e-40
Identity = 68/83 (81.93%), Postives = 70/83 (84.34%), Query Frame = 1
Query:   22 MKTNKTLTYLDLSHNLIGSQ------------ESINYVRPEFYTGAEALADWISTGSCPLKYLDISWNTIRLDSAVYFGNAVA 234
            MK NKTLTYLDLSHNLIGSQ            ESINYVRPEFYTGAEALADW+STGSCPLKYLD+SWNTIRLDSAVYFGNAVA
Sbjct:    1 MKANKTLTYLDLSHNLIGSQVLIRHVPVDFVQESINYVRPEFYTGAEALADWVSTGSCPLKYLDVSWNTIRLDSAVYFGNAVA 83          
BLAST of mRNA_L-elsbetiae_contig705.15849.1 vs. uniprot
Match: A0A835Z3V7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3V7_9STRA)

HSP 1 Score: 110 bits (274), Expect = 1.880e-27
Identity = 50/78 (64.10%), Postives = 63/78 (80.77%), Query Frame = 1
Query:    1 ASNFVKHMKTNKTLTYLDLSHNLIGSQESINYVRPEFYTGAEALADWISTGSCPLKYLDISWNTIRLDSAVYFGNAVA 234
            AS FV+ ++ N +LT+LDLS NLIG QES+NYV P FYTGAEALADW++   C L++LD+SWNTIRL SA+ FG A+A
Sbjct:  108 ASKFVEQLRHNTSLTHLDLSRNLIGKQESVNYVNPAFYTGAEALADWLAMPQCRLRHLDVSWNTIRLGSAISFGEALA 185          
BLAST of mRNA_L-elsbetiae_contig705.15849.1 vs. uniprot
Match: A0A7S3UU35_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UU35_HETAK)

HSP 1 Score: 78.2 bits (191), Expect = 4.080e-15
Identity = 37/76 (48.68%), Postives = 54/76 (71.05%), Query Frame = 1
Query:    7 NFVKHMKTNKTLTYLDLSHNLIGSQESINYVRPEFYTGAEALADWISTGSCPLKYLDISWNTIRLDSAVYFGNAVA 234
            N +  +  N+ LT LDLSHNLIG+ E +N V+P++ TG EA+A+ +   +C L+ L++SWN IRL+SAV  G A+A
Sbjct:   36 NLLDALAHNRNLTSLDLSHNLIGTNEVMNVVQPDYTTGGEAVAESLEHPNCKLRALNLSWNLIRLESAVALGEALA 111          
BLAST of mRNA_L-elsbetiae_contig705.15849.1 vs. uniprot
Match: A0A7S3UU41_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UU41_HETAK)

HSP 1 Score: 78.2 bits (191), Expect = 4.160e-15
Identity = 37/76 (48.68%), Postives = 54/76 (71.05%), Query Frame = 1
Query:    7 NFVKHMKTNKTLTYLDLSHNLIGSQESINYVRPEFYTGAEALADWISTGSCPLKYLDISWNTIRLDSAVYFGNAVA 234
            N +  +  N+ LT LDLSHNLIG+ E +N V+P++ TG EA+A+ +   +C L+ L++SWN IRL+SAV  G A+A
Sbjct:   36 NLLDALAHNRNLTSLDLSHNLIGTNEVMNVVQPDYTTGGEAVAESLEHPNCKLRALNLSWNLIRLESAVALGEALA 111          
BLAST of mRNA_L-elsbetiae_contig705.15849.1 vs. uniprot
Match: A0A7S3M7K4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M7K4_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 1.600e-14
Identity = 32/76 (42.11%), Postives = 54/76 (71.05%), Query Frame = 1
Query:    4 SNFVKHMKTNKTLTYLDLSHNLIGSQESINYVRPEFYTGAEALADWISTGSCPLKYLDISWNTIRLDSAVYFGNAV 231
            +NFV+ +  N+ L  LD+S+NL+G  E++N V+P+F TG E+L++ +S  +CPL+ L++ WN IRL+ A    N++
Sbjct:   61 ANFVEVLMNNRHLKELDMSNNLLGKDENLNAVQPDFVTGGESLSELLSNPNCPLRTLNLHWNMIRLEGAEVLCNSL 136          
BLAST of mRNA_L-elsbetiae_contig705.15849.1 vs. uniprot
Match: T0Q8G5_SAPDV (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0Q8G5_SAPDV)

HSP 1 Score: 73.6 bits (179), Expect = 1.760e-13
Identity = 36/74 (48.65%), Postives = 51/74 (68.92%), Query Frame = 1
Query:   10 FVKHMKTNKTLTYLDLSHNLIGSQESINYVRPEFYTGAEALADWISTGSCPLKYLDISWNTIRLDSAVYFGNAV 231
            F   MKTN+  T L+LS NLIG+ E++N V+P+  TG EALAD ++  +  L  LD+SWN +RL+SA+  G A+
Sbjct:  336 FADAMKTNRICTTLNLSRNLIGTSEALNAVQPDLVTGGEALADMLAANN-HLTKLDLSWNVLRLNSAIQLGRAI 408          
BLAST of mRNA_L-elsbetiae_contig705.15849.1 vs. uniprot
Match: A0A397FVB9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397FVB9_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 2.300e-13
Identity = 36/73 (49.32%), Postives = 50/73 (68.49%), Query Frame = 1
Query:   10 FVKHMKTNKTLTYLDLSHNLIGSQESINYVRPEFYTGAEALADWISTGSCPLKYLDISWNTIRLDSAVYFGNA 228
            F K + TN+T   LDLS N+IGS E++N V+P+  TG EALA+ ++T    L  L++SWN +RL+SAV  G A
Sbjct:    9 FAKALCTNRTCHTLDLSRNVIGSNEALNVVQPDLVTGGEALAEMLATNG-HLTVLNLSWNFLRLNSAVELGRA 80          
BLAST of mRNA_L-elsbetiae_contig705.15849.1 vs. uniprot
Match: A0A6G0WGZ0_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WGZ0_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 4.490e-13
Identity = 39/75 (52.00%), Postives = 52/75 (69.33%), Query Frame = 1
Query:   10 FVKHMKTNKTLTYLDLSHNLIGSQESINYVRPEFYTGAEALADWISTGSCPLKYLDISWNTIRLDSAVYFGNAVA 234
            F K +  NKTL  LDLS NLIGS E++N V+P+  TG EALA+ + T +  L  L++SWN +RL+SAV  G A+A
Sbjct:  350 FAKALCANKTLHNLDLSRNLIGSNEALNVVQPDLTTGGEALAEML-TANNHLTSLNLSWNFLRLNSAVELGRALA 423          
BLAST of mRNA_L-elsbetiae_contig705.15849.1 vs. uniprot
Match: A0A835YQS8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQS8_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 8.400e-13
Identity = 34/71 (47.89%), Postives = 50/71 (70.42%), Query Frame = 1
Query:   22 MKTNKTLTYLDLSHNLIGSQESINYVRPEFYTGAEALADWISTGSCPLKYLDISWNTIRLDSAVYFGNAVA 234
            +K N++LT LDLS NLIG  E +N V+P+  TG EA+AD +      L++LD+SWN++R+ SA+  G A+A
Sbjct:   54 LKLNRSLTELDLSRNLIGQTEVLNTVQPDLVTGGEAIADMLRVNKT-LRHLDLSWNSVRMGSALALGQALA 123          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig705.15849.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0Q5_ECTSI7.120e-4496.15Hypothetical leucine rich repeat calcium binding p... [more]
A0A6H5J9E0_9PHAE1.830e-4081.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z3V7_9STRA1.880e-2764.10Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S3UU35_HETAK4.080e-1548.68Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S3UU41_HETAK4.160e-1548.68Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A7S3M7K4_9STRA1.600e-1442.11Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
T0Q8G5_SAPDV1.760e-1348.65Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A397FVB9_9STRA2.300e-1349.32Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A6G0WGZ0_9STRA4.490e-1352.00Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A835YQS8_9STRA8.400e-1347.89Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig705contigL-elsbetiae_contig705:144..1195 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score146.7
Seed ortholog evalue4e-33
Seed eggNOG ortholog2880.D7G0Q5
Hectar predicted targeting categoryother localisation
EggNOG free text desc.interleukin-8 biosynthetic process
EggNOG OGsKOG4308@1,KOG4308@2759
Ec32 ortholog descriptionHypothetical leucine rich repeat calcium binding protein
Ec32 orthologEc-08_000150.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size234
Cds size213
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig705.15849.1prot_L-elsbetiae_contig705.15849.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig705 144..1174 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816782.3071322-CDS-L-elsbetiae_contig705:143..2961622816782.3071322-CDS-L-elsbetiae_contig705:143..296Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig705 144..296 -
1691683809.1734083-CDS-L-elsbetiae_contig705:143..2961691683809.1734083-CDS-L-elsbetiae_contig705:143..296Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig705 144..296 -
1622816782.319351-CDS-L-elsbetiae_contig705:1114..11741622816782.319351-CDS-L-elsbetiae_contig705:1114..1174Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig705 1115..1174 -
1691683809.188257-CDS-L-elsbetiae_contig705:1114..11741691683809.188257-CDS-L-elsbetiae_contig705:1114..1174Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig705 1115..1174 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816782.3295941-UTR-L-elsbetiae_contig705:1174..11951622816782.3295941-UTR-L-elsbetiae_contig705:1174..1195Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig705 1175..1195 -
1691683809.201822-UTR-L-elsbetiae_contig705:1174..11951691683809.201822-UTR-L-elsbetiae_contig705:1174..1195Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig705 1175..1195 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig705.15849.1

>prot_L-elsbetiae_contig705.15849.1 ID=prot_L-elsbetiae_contig705.15849.1|Name=mRNA_L-elsbetiae_contig705.15849.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=71bp
MKTNKTLTYLDLSHNLIGSQESINYVRPEFYTGAEALADWISTGSCPLKY
LDISWNTIRLDSAVYFGNAVA
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mRNA from alignment at L-elsbetiae_contig705:144..1195-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig705.15849.1 ID=mRNA_L-elsbetiae_contig705.15849.1|Name=mRNA_L-elsbetiae_contig705.15849.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1052bp|location=Sequence derived from alignment at L-elsbetiae_contig705:144..1195- (Laminarionema elsbetiae ELsaHSoW15)
GCGTCGAACTTCGTGAAGCACATGAAGACCAACAAGACGCTGACGTATCT CGACCTCAGCCACAACCTCATAGGCAGCCAGGTGAGGGGCTGGTGAGAGG CGGCGCCAAGGTTTGTTGTTGTCTGTTGTTGTTTCCCACATTAGTCTAAA AACCATCCATGGGGGCCCCTGGTCGCCCAAAAGCAGGGCACACTCGACGC CGCTGAAGAAAAAGTAAAACAAAACTATGATACGTACGCGCCAGGCAACA CTAAGCTGACTCCCGGAGGGGTCTTGCGTCTCATTGGCACCATAACAAAA TCAAGGTACTCTGTAGGGTACATACATACCTTCGGAAGATAAAAGGCACT CTGTAGGGTACTACCACTCGGAAGATAAAAGGCACTCTGTAGGGTACATA CCACTCGGAAATTAAAAGGTGCGCGTTGAGGATGCTCAGGGCGTTGAGGC GTTTAACCACAGCACGAAGAGGCCGGCTGTAGCGCTTCTTCGGAGTTGGC CAGCAACAAACCGCATCAAACATGGACAGGACATAAAAGATAGAAATATT GAAAGGTTGAAAGCCTATCTTATCTTTACGAGGGAGAGCCGGCCTTTCGA GGCTCCTCATCTCTCCTCTGCTTCATTTTGAGTCACAACAATACGACCCT TACAGCTAGCTTCCCACGCAATACATAGAAGCATATCGACAAGGCCGAAA AGGTTGCCTCTGTATAGTCTACCCTCATCGCCCTTAAATCTTGTTTTCAA AGAATTTAAAACCCGCATAGCACCACTAAAATGCCACTAACGACGCAAAC TTCGCCCCCCTCCCGACCGACCCTTTGCTTCTGATGCGGCTCGCAACAAC CAATGCGGTCACGATTTGGTGATTTGATGGTTTGATGACTTGATTACAGG AAAGCATCAACTACGTCCGACCGGAGTTTTACACTGGTGCCGAGGCGTTG GCGGACTGGATCTCGACGGGGAGTTGCCCGCTCAAGTACCTCGATATCTC CTGGAACACCATTCGCCTAGACTCCGCCGTCTACTTCGGGAATGCGGTTG CA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig705:144..1195-

>mRNA_L-elsbetiae_contig705.15849.1 ID=mRNA_L-elsbetiae_contig705.15849.1|Name=mRNA_L-elsbetiae_contig705.15849.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=426bp|location=Sequence derived from alignment at L-elsbetiae_contig705:144..1195- (Laminarionema elsbetiae ELsaHSoW15)
ATGAAGACCAACAAGACGCTGACGTATCTCGACCTCAGCCACAACCTCAT
AGGCAGCCAGATGAAGACCAACAAGACGCTGACGTATCTCGACCTCAGCC
ACAACCTCATAGGCAGCCAGGAAAGCATCAACTACGTCCGACCGGAGTTT
TACACTGGTGCCGAGGCGTTGGCGGACTGGATCTCGACGGGGAGTTGCCC
GCTCAAGTACCTCGATATCTCCTGGAACACCATTCGCCTAGACTCCGCCG
TCTACTTCGGGAATGCGGTTGCAGAAAGCATCAACTACGTCCGACCGGAG
TTTTACACTGGTGCCGAGGCGTTGGCGGACTGGATCTCGACGGGGAGTTG
CCCGCTCAAGTACCTCGATATCTCCTGGAACACCATTCGCCTAGACTCCG
CCGTCTACTTCGGGAATGCGGTTGCA
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