mRNA_L-elsbetiae_contig704.15840.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig704.15840.1
Unique NamemRNA_L-elsbetiae_contig704.15840.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig704.15840.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig704contigL-elsbetiae_contig704:7022..7558 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size537
Cds size312
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig704.15840.1prot_L-elsbetiae_contig704.15840.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig704 7030..7341 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816781.5962667-UTR-L-elsbetiae_contig704:7021..70291622816781.5962667-UTR-L-elsbetiae_contig704:7021..7029Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig704 7022..7029 +
1691683808.6549435-UTR-L-elsbetiae_contig704:7021..70291691683808.6549435-UTR-L-elsbetiae_contig704:7021..7029Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig704 7022..7029 +
1622816781.617779-UTR-L-elsbetiae_contig704:7341..75581622816781.617779-UTR-L-elsbetiae_contig704:7341..7558Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig704 7342..7558 +
1691683808.6859071-UTR-L-elsbetiae_contig704:7341..75581691683808.6859071-UTR-L-elsbetiae_contig704:7341..7558Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig704 7342..7558 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816781.6075964-CDS-L-elsbetiae_contig704:7029..73411622816781.6075964-CDS-L-elsbetiae_contig704:7029..7341Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig704 7030..7341 +
1691683808.668607-CDS-L-elsbetiae_contig704:7029..73411691683808.668607-CDS-L-elsbetiae_contig704:7029..7341Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig704 7030..7341 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig704.15840.1

>prot_L-elsbetiae_contig704.15840.1 ID=prot_L-elsbetiae_contig704.15840.1|Name=mRNA_L-elsbetiae_contig704.15840.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=104bp
MFEGEPRTTRRYTTPLDATPRQKKRISPAERAQLRAGHWWVGGWEGGMGN
VIGLQPTREDFFFFATRCTLCWIEAQPAPGNGVWLPPSWAVFICTNLVWP
RVR*
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mRNA from alignment at L-elsbetiae_contig704:7022..7558+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig704.15840.1 ID=mRNA_L-elsbetiae_contig704.15840.1|Name=mRNA_L-elsbetiae_contig704.15840.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=537bp|location=Sequence derived from alignment at L-elsbetiae_contig704:7022..7558+ (Laminarionema elsbetiae ELsaHSoW15)
GCCGAAGAATGTTTGAAGGGGAACCACGGACAACGCGACGGTACACCACA
CCACTCGACGCCACACCACGACAAAAAAAACGGATTTCACCCGCGGAAAG
GGCGCAGCTGAGGGCAGGCCATTGGTGGGTTGGTGGATGGGAAGGGGGCA
TGGGAAACGTCATCGGTCTACAACCAACCAGGGAAGATTTTTTTTTTTTT
GCGACCAGGTGTACCTTGTGTTGGATTGAGGCTCAGCCGGCCCCCGGGAA
CGGCGTCTGGCTGCCTCCAAGCTGGGCTGTTTTTATATGCACGAACCTTG
TCTGGCCGCGCGTGCGATGAATAGCGTATGACCGCCTGTGCGCGCGGGCG
CGGCCGCCACACACGCAAAGCGACCGTGCGCGACCGATGGCGAGGGAAAG
CTCTGAGAAGGCTGCTTTCTGCTTGGGGGCGACGCGACTGCTGTGTCTTT
GTGGGTGTGGGGTGGATGGACAGGGCGAGCCGTCTGTCTTTCAAAAAGCG
ACTTGGCCGCCACACCCTGGCGGGGAGAGGAATAGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig704:7022..7558+

>mRNA_L-elsbetiae_contig704.15840.1 ID=mRNA_L-elsbetiae_contig704.15840.1|Name=mRNA_L-elsbetiae_contig704.15840.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=624bp|location=Sequence derived from alignment at L-elsbetiae_contig704:7022..7558+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTTTGAAGGGGAACCACGGACAACGCGACGGTACACCACACCACTCGA
CGCCACACCACGACAAAAAAAACGGATTTCACCCGCGGAAAGGGCGCAGC
TGAGGGCAGGCCATTGGTGGGTTGGTGGATGGGAAGGGGGCATGGGAAAC
GTCATCGGTCTACAACCAACCAGGGAAGATTTTTTTTTTTTTGCGACCAG
GTGTACCTTGTGTTGGATTGAGGCTCAGCCGGCCCCCGGGAACGGCGTCT
GGCTGCCTCCAAGCTGGGCTGTTTTTATATGCACGAACCTTGTCTGGCCG
CGCGTGCGATGAATGTTTGAAGGGGAACCACGGACAACGCGACGGTACAC
CACACCACTCGACGCCACACCACGACAAAAAAAACGGATTTCACCCGCGG
AAAGGGCGCAGCTGAGGGCAGGCCATTGGTGGGTTGGTGGATGGGAAGGG
GGCATGGGAAACGTCATCGGTCTACAACCAACCAGGGAAGATTTTTTTTT
TTTTGCGACCAGGTGTACCTTGTGTTGGATTGAGGCTCAGCCGGCCCCCG
GGAACGGCGTCTGGCTGCCTCCAAGCTGGGCTGTTTTTATATGCACGAAC
CTTGTCTGGCCGCGCGTGCGATGA
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