mRNA_L-elsbetiae_contig7027.15827.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7027.15827.1
Unique NamemRNA_L-elsbetiae_contig7027.15827.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7027.15827.1 vs. uniprot
Match: A0A6H5J7G6_9PHAE (MFS domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5J7G6_9PHAE)

HSP 1 Score: 155 bits (391), Expect = 2.320e-42
Identity = 77/81 (95.06%), Postives = 79/81 (97.53%), Query Frame = 2 
Query:  164 RHGDSS--KLESRYLLVLPVLFYEFLALALIRGLLPTLMLDFWGKWTYTVIGVIDTGKGLLAFVACPMFGRLSDVIGRKRC 400
            RHGDSS  +LESRYLLVLPVLFYEFLALALIRGLLPTLMLDFWGKWTYTVIGVIDTGKGLLAFVACPMFGRLSDVIGRK+C
Sbjct:    5 RHGDSSSSRLESRYLLVLPVLFYEFLALALIRGLLPTLMLDFWGKWTYTVIGVIDTGKGLLAFVACPMFGRLSDVIGRKKC 85
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BLAST of mRNA_L-elsbetiae_contig7027.15827.1 vs. uniprot
Match: A0A836CJ60_9STRA (Hippocampus abundant transcript 1 protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ60_9STRA)

HSP 1 Score: 110 bits (274), Expect = 1.070e-25
Identity = 50/70 (71.43%), Postives = 62/70 (88.57%), Query Frame = 2 
Query:  191 SRYLLVLPVLFYEFLALALIRGLLPTLMLDFWGKWTYTVIGVIDTGKGLLAFVACPMFGRLSDVIGRKRC 400
            +R+  VLPVLF+EFLA+A+ R L+P LM+DF+G+WTY VIGV++T KGLLAF ACPMFGRLSDVIGR+RC
Sbjct:    1 NRFFYVLPVLFFEFLAIAMARSLIPGLMVDFFGEWTYHVIGVVETVKGLLAFAACPMFGRLSDVIGRRRC 70
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BLAST of mRNA_L-elsbetiae_contig7027.15827.1 vs. uniprot
Match: A0A4D9D9X9_9STRA (MFS domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D9X9_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 1.660e-19
Identity = 43/69 (62.32%), Postives = 57/69 (82.61%), Query Frame = 2 
Query:  188 ESRYLLVLPVLFYEFLALALIRGLLPTLMLDFWGKWTYTVIGVIDTGKGLLAFVACPMFGRLSDVIGRK 394
            E RYL VLPVLF E+LAL+L R LLP LM   +G +TY V+G+++T KG+LAF+ACP+FG+LSDV+GR+
Sbjct:   55 ERRYLYVLPVLFLEYLALSLSRALLPGLMNSAFGNYTYHVLGIVETAKGILAFMACPLFGKLSDVVGRR 123
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BLAST of mRNA_L-elsbetiae_contig7027.15827.1 vs. uniprot
Match: A0A6V3A0Z0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V3A0Z0_HETAK)

HSP 1 Score: 92.0 bits (227), Expect = 3.380e-19
Identity = 42/70 (60.00%), Postives = 57/70 (81.43%), Query Frame = 2 
Query:  191 SRYLLVLPVLFYEFLALALIRGLLPTLMLDFWGKWTYTVIGVIDTGKGLLAFVACPMFGRLSDVIGRKRC 400
            S+YL VLPVLFYEFLAL+LI+ L+P +M  ++G WTY +IG+ +  KG+LAF +C +FG+LSD IGRK+C
Sbjct:   19 SKYLHVLPVLFYEFLALSLIKSLVPEMMNAYFGDWTYHIIGMSEAVKGILAFTSCSVFGKLSDRIGRKKC 88
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BLAST of mRNA_L-elsbetiae_contig7027.15827.1 vs. uniprot
Match: F0Y760_AURAN (MFS domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y760_AURAN)

HSP 1 Score: 89.0 bits (219), Expect = 3.450e-19
Identity = 41/68 (60.29%), Postives = 53/68 (77.94%), Query Frame = 2 
Query:  197 YLLVLPVLFYEFLALALIRGLLPTLMLDFWGKWTYTVIGVIDTGKGLLAFVACPMFGRLSDVIGRKRC 400
            Y+ +LPVLF EFLA+A+ + LLP  + DF+G+  Y VIGV +T KG+ AFVACP+FGRLSDV+GR  C
Sbjct:   27 YVFILPVLFVEFLAIAVTKSLLPARLNDFFGEEVYMVIGVAETVKGIFAFVACPLFGRLSDVVGRTSC 94
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BLAST of mRNA_L-elsbetiae_contig7027.15827.1 vs. uniprot
Match: A0A448ZPB3_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZPB3_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 3.970e-18
Identity = 41/77 (53.25%), Postives = 58/77 (75.32%), Query Frame = 2 
Query:  170 GDSSKLESRYLLVLPVLFYEFLALALIRGLLPTLMLDFWGKWTYTVIGVIDTGKGLLAFVACPMFGRLSDVIGRKRC 400
            G    +++R+L VLPVL  EFLA+AL R +LP+++++ +G   Y V+GV D  +G+LAF ACPMFG+LSDV+GRK C
Sbjct:  129 GXGEMIQNRHLFVLPVLLLEFLAIALTRAVLPSILIEEYGSNVYVVLGVADCIRGILAFFACPMFGKLSDVLGRKIC 205
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BLAST of mRNA_L-elsbetiae_contig7027.15827.1 vs. uniprot
Match: A0A7S3MB15_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MB15_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 1.950e-17
Identity = 38/73 (52.05%), Postives = 59/73 (80.82%), Query Frame = 2 
Query:  182 KLESRYLLVLPVLFYEFLALALIRGLLPTLMLDFWGKWTYTVIGVIDTGKGLLAFVACPMFGRLSDVIGRKRC 400
            K +  Y ++LPVLF E+LA++L+R L+P +++D +GK++Y  +G+++T KGLLAFV+ P+FG+LSD IGRK C
Sbjct:    4 KSKVAYTMILPVLFLEYLAVSLVRSLIPGMIVDSFGKYSYLAVGIMETMKGLLAFVSSPLFGKLSDKIGRKYC 76
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BLAST of mRNA_L-elsbetiae_contig7027.15827.1 vs. uniprot
Match: A0A8J9SLQ6_PHATR (Hypothetical protein (Fragment) n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9SLQ6_PHATR)

HSP 1 Score: 80.1 bits (196), Expect = 2.670e-17
Identity = 38/65 (58.46%), Postives = 50/65 (76.92%), Query Frame = 2 
Query:  206 VLPVLFYEFLALALIRGLLPTLMLDFWGKWTYTVIGVIDTGKGLLAFVACPMFGRLSDVIGRKRC 400
            VLPVL  EFLA+AL R +LP+L+L  +G   Y V+G+ D  +GLLAF ACP+FG+LSD+IGR+ C
Sbjct:    2 VLPVLLLEFLAVALTRAVLPSLLLQQYGSSVYLVMGIADCVRGLLAFCACPIFGKLSDLIGRRIC 66
[Close]
BLAST of mRNA_L-elsbetiae_contig7027.15827.1 vs. uniprot
Match: A0A482SMC9_9ARCH (MFS transporter n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SMC9_9ARCH)

HSP 1 Score: 83.6 bits (205), Expect = 3.390e-17
Identity = 37/68 (54.41%), Postives = 56/68 (82.35%), Query Frame = 2 
Query:  197 YLLVLPVLFYEFLALALIRGLLPTLMLDFWGKWTYTVIGVIDTGKGLLAFVACPMFGRLSDVIGRKRC 400
            +L VLPVLF E+L+++L+R LLP +++D +G ++Y ++G+ +T KGLLAF+ACP+ GR+SD IGRK C
Sbjct:   13 FLKVLPVLFLEYLSVSLVRSLLPRMIVDTFGPYSYFMVGICETIKGLLAFLACPILGRISDRIGRKPC 80
[Close]
BLAST of mRNA_L-elsbetiae_contig7027.15827.1 vs. uniprot
Match: A0A6U9ZSZ6_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A6U9ZSZ6_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 2.250e-16
Identity = 38/77 (49.35%), Postives = 57/77 (74.03%), Query Frame = 2 
Query:  170 GDSSKLESRYLLVLPVLFYEFLALALIRGLLPTLMLDFWGKWTYTVIGVIDTGKGLLAFVACPMFGRLSDVIGRKRC 400
            G    ++ ++L VLPVL  EFLA+AL R +LP+++++ +G   Y V+G+ D  +G+LAF ACP+FG+LSDV+GRK C
Sbjct:  139 GGGQMIQYQHLYVLPVLLLEFLAIALTRAVLPSILIEQYGSNVYVVLGIADCIRGVLAFFACPLFGKLSDVLGRKIC 215
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7027.15827.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
A0A6H5J7G6_9PHAE2.320e-4295.06MFS domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A836CJ60_9STRA1.070e-2571.43Hippocampus abundant transcript 1 protein (Fragmen... [more]
A0A4D9D9X9_9STRA1.660e-1962.32MFS domain-containing protein n=2 Tax=Monodopsidac... [more]
A0A6V3A0Z0_HETAK3.380e-1960.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
F0Y760_AURAN3.450e-1960.29MFS domain-containing protein (Fragment) n=1 Tax=A... [more]
A0A448ZPB3_9STRA3.970e-1853.25Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A7S3MB15_9STRA1.950e-1752.05Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A8J9SLQ6_PHATR2.670e-1758.46Hypothetical protein (Fragment) n=3 Tax=Phaeodacty... [more]
A0A482SMC9_9ARCH3.390e-1754.41MFS transporter n=1 Tax=archaeon TaxID=1906665 Rep... [more]
A0A6U9ZSZ6_9STRA2.250e-1649.35Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7027contigL-elsbetiae_contig7027:1845..3294 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score156.8
Seed ortholog evalue4.5e-36
Seed eggNOG ortholog2880.D7FX29
Preferred nameHIAT1
KEGG koko:K10393
Hectar predicted targeting categorysignal peptide
GOsGO:0003674,GO:0005215,GO:0006810,GO:0008150,GO:0051179,GO:0051234,GO:0055085
EggNOG free text desc.folate import across plasma membrane
EggNOG OGsKOG2816@1,KOG2816@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036,ko04812
Exons2
Model size400
Cds size246
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7027.15827.1prot_L-elsbetiae_contig7027.15827.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7027 1999..3294 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816780.0250247-UTR-L-elsbetiae_contig7027:1844..19981622816780.0250247-UTR-L-elsbetiae_contig7027:1844..1998Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7027 1845..1998 +
1691683807.3902266-UTR-L-elsbetiae_contig7027:1844..19981691683807.3902266-UTR-L-elsbetiae_contig7027:1844..1998Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7027 1845..1998 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816780.0349684-CDS-L-elsbetiae_contig7027:1998..21771622816780.0349684-CDS-L-elsbetiae_contig7027:1998..2177Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7027 1999..2177 +
1691683807.4043896-CDS-L-elsbetiae_contig7027:1998..21771691683807.4043896-CDS-L-elsbetiae_contig7027:1998..2177Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7027 1999..2177 +
1622816780.0479395-CDS-L-elsbetiae_contig7027:3227..32941622816780.0479395-CDS-L-elsbetiae_contig7027:3227..3294Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7027 3228..3294 +
1691683807.413381-CDS-L-elsbetiae_contig7027:3227..32941691683807.413381-CDS-L-elsbetiae_contig7027:3227..3294Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7027 3228..3294 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7027.15827.1

>prot_L-elsbetiae_contig7027.15827.1 ID=prot_L-elsbetiae_contig7027.15827.1|Name=mRNA_L-elsbetiae_contig7027.15827.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=82bp
MQRRHGDSSKLESRYLLVLPVLFYEFLALALIRGLLPTLMLDFWGKWTYT
VIGVIDTGKGLLAFVACPMFGRLSDVIGRKRC
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mRNA from alignment at L-elsbetiae_contig7027:1845..3294+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7027.15827.1 ID=mRNA_L-elsbetiae_contig7027.15827.1|Name=mRNA_L-elsbetiae_contig7027.15827.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1450bp|location=Sequence derived from alignment at L-elsbetiae_contig7027:1845..3294+ (Laminarionema elsbetiae ELsaHSoW15)
TGTTTGTGGATGTCTTCCGAGGATAACAAAACACACACTAGGCAGTGGGG
TATCATTCTTTCACCTGTTGCACAGAGTGGATCTTGTTCAGTTCGCAGCA
GGAACCGGCGCCGGTAGCCTGGAGGGGAGTGGGGACAGCAGCTGATCACT
CACCATGCAGCGACGACATGGCGACTCTAGCAAACTGGAGTCGAGATATC
TCCTTGTGCTCCCCGTGCTGTTTTACGAGTTTCTTGCGTTGGCCTTGATC
CGAGGCCTCCTGCCGACGCTGATGCTTGACTTCTGGGGCAAGTGGACGTA
CACCGTGATCGGTGTGATCGACACCGGGAAGGGGTGAGTGAGTCTGTTTG
GGGGGGAGGCCAAGAGGCTTTGAAAATGTAAATAATGTGTTCTTCACGAA
CGGCAGCTCCAGCGAGCTCCAGCACGAGCTTCTCAGCATCAATCGTAGCG
ATGCGTTCGGGCGTATGAGTGCATGCATGCATGTATGGGGGGATGCAGCA
TGTGTAGGCTCTCGCGTGTGGTTGTTGCGCAATGTCAATGTTCCCTGTGT
GTGAAATGATACGTCAATGTTCTTTGTACAGTCAGTAGCAGTAGGTCTAT
CTACACAGCAAACTCTCCGCTCCTCCAAGCTCTTCCGTCTGTCTGTGTCT
GTGATTGTGGCCGTCGCTTGCTTGTTCTACGTGGTTAATGTTCAGCACAC
CTGACCCATCCACTCTGTAATGGAGCAGCACGAGAGGCACCCTAAAGACC
TCTCCAGCTAAAATCGTTCACACACTTAGATATGTATGTACATAACATAC
CATCACTGCTGTACTGCTACTGTGTGGAACGGGTACATATCGACGATGGT
ATCTAGACCAGACTACCGGTAATCTTATTGCAGTCTAATCTACATGTGTT
TTTTGTCTTACACCTTGGCGCACGATTTGTCCACCTTACAAGCAGCACAC
CAGAGCAACGTGTACGGAGTAAGTACCGCGCGTTGTATGACACCACCCGA
AGTACGGACAACCGCTGCTACGGTAGAGTCTAGTAGTATTTTCAGCACAC
CTGGCAGGCAGCCAAGTCCAGAGAATCCCACAAGGCACACGCCACGGTTT
CTTCCATCGCCGATCCCAACACCAGCCTGTGTTGTATGTAACACCATCCC
CTCATCCCCTCATCCCGCTGCCGCCGCCGCCGCCCCCACCCCATCACCGA
GCATGTTCCCGATCATATCATTACTTCTACTTGTTGTGCACAGGTGCATA
GTCTACATCCTGCTGTAAAAATAAGTCTTATCTCCATCGCTCACTGCCCG
TGCACACCTGCGCCACAACTCGCCCCGACCGGCGGACCACTGCTGCACAT
TCACGTCACTGCTGCTGTTTTTGTGCTGCGCAGGCTACTGGCGTTCGTCG
CGTGTCCCATGTTCGGGAGGCTCAGCGACGTGATCGGGCGGAAGCGGTGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7027:1845..3294+

>mRNA_L-elsbetiae_contig7027.15827.1 ID=mRNA_L-elsbetiae_contig7027.15827.1|Name=mRNA_L-elsbetiae_contig7027.15827.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=492bp|location=Sequence derived from alignment at L-elsbetiae_contig7027:1845..3294+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCAGCGACGACATGGCGACTCTAGCAAACTGGAGTCGAGATATCTCCT
TGTGCTCCCCGTGCTGTTTTACGAGTTTCTTGCGTTGGCCTTGATCCGAG
GCCTCCTGCCGACGCTGATGCTTGACTTCTGGGGCAAGTGGACGTACACC
GTGATCGGTGTGATCGACACCGGGAAGGGATGCAGCGACGACATGGCGAC
TCTAGCAAACTGGAGTCGAGATATCTCCTTGTGCTCCCCGTGCTGTTTTA
CGAGTTTCTTGCGTTGGCCTTGATCCGAGGCCTCCTGCCGACGCTGATGC
TTGACTTCTGGGGCAAGTGGACGTACACCGTGATCGGTGTGATCGACACC
GGGAAGGGGCTACTGGCGTTCGTCGCGTGTCCCATGTTCGGGAGGCTCAG
CGACGTGATCGGGCGGAAGCGGTGCGCTACTGGCGTTCGTCGCGTGTCCC
ATGTTCGGGAGGCTCAGCGACGTGATCGGGCGGAAGCGGTGC
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