mRNA_L-elsbetiae_contig7023.15826.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7023.15826.1
Unique NamemRNA_L-elsbetiae_contig7023.15826.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7023.15826.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7023contigL-elsbetiae_contig7023:4431..5814 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size265
Cds size261
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7023.15826.1prot_L-elsbetiae_contig7023.15826.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7023 4431..5812 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816779.9684496-CDS-L-elsbetiae_contig7023:4430..45431622816779.9684496-CDS-L-elsbetiae_contig7023:4430..4543Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7023 4431..4543 +
1691683807.35362-CDS-L-elsbetiae_contig7023:4430..45431691683807.35362-CDS-L-elsbetiae_contig7023:4430..4543Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7023 4431..4543 +
1622816779.98092-CDS-L-elsbetiae_contig7023:5391..54821622816779.98092-CDS-L-elsbetiae_contig7023:5391..5482Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7023 5392..5482 +
1691683807.3665044-CDS-L-elsbetiae_contig7023:5391..54821691683807.3665044-CDS-L-elsbetiae_contig7023:5391..5482Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7023 5392..5482 +
1622816779.9933164-CDS-L-elsbetiae_contig7023:5755..58121622816779.9933164-CDS-L-elsbetiae_contig7023:5755..5812Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7023 5756..5812 +
1691683807.3792286-CDS-L-elsbetiae_contig7023:5755..58121691683807.3792286-CDS-L-elsbetiae_contig7023:5755..5812Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7023 5756..5812 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7023.15826.1

>prot_L-elsbetiae_contig7023.15826.1 ID=prot_L-elsbetiae_contig7023.15826.1|Name=mRNA_L-elsbetiae_contig7023.15826.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=87bp
RGEPGGVGNEEGQRDESVMVGAMQGWKAAVNALDQSQRELQCYREMEGEA
SSAILGALEATMATFRGQVLIMTGRNAEWLACRAKRC
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mRNA from alignment at L-elsbetiae_contig7023:4431..5814+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7023.15826.1 ID=mRNA_L-elsbetiae_contig7023.15826.1|Name=mRNA_L-elsbetiae_contig7023.15826.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1384bp|location=Sequence derived from alignment at L-elsbetiae_contig7023:4431..5814+ (Laminarionema elsbetiae ELsaHSoW15)
CGAGGCGAACCCGGCGGGGTAGGAAACGAAGAAGGGCAACGGGACGAGTC
CGTCATGGTCGGCGCAATGCAAGGGTGGAAAGCTGCAGTGAACGCGTTGG
ATCAGAGCCAAAGGTACAGCTGCATACCGGCACTCAACGACCAGGAACAC
GGCCAGCCCAGACACTAGACATAACGTATCTCAAAACAATCTAGTGCAGA
TTAGAAATGCCGCGTTTTAGGGTATCTTTCCCTGTGTGGGGCCTGCTCTG
ATGTGGTCGGTGGTATCAAAGCCTCAGCTGGAGGAGACGCTTTGGAAAGT
TGTCTTAAGCGGCTTATATTTGATGGATGTTTGTCACTTTTCAACAGGCG
CACAATGTTTTCCGCGAAGCACTTTTGCGCCAGGAGAACGGTATTACTGC
CAGGTCCGGGTGGAGCGCCAAAGAGGAAAACAAAGACTGATACGAAGTAT
GTCTTTCAAAGATTTTTAAAGAGGGGGTTGACGTTTGCAGGCATGACATC
TGTGGCCTTTCTATTCATCGCAGTAAAGGCCGTGGTTGGCCGGCGAACGG
CTATCGCGTCTACTCTGTTGTGTTGTTTTTATTCGCAGCGTCGAAACGTT
GGTGGTGCGGGTCCACAACTGGGACAGCACTTGACTCGCGAGGCCCCAAC
TCAACACAAAAGTGTGGGTTTGCCAAGGCTGCAGTATTTTTTTCTCCTAG
ATAGTACCTTTGTACGGGATTTTTCGTCCGTGTTGATGTTGGCTGGGATG
TTTTTCCGAGCAAGGTCATACGTTCCACCGCTGTATCCGAAGAACCTGAG
GCCCATTGAGACGAGGGGTGAATCGAATTTTGGCGATTTTTAAGGTTCTT
CCTACAGCTCCAGCCGACACAGAAAATTACCAGAAAATGATTCGTTGCTT
TGCCCTGTCGTCGTTTTTGTCCACCCCGCAACGTGACCCCCATCTCTGCT
CTTCGATGCAGAGAACTGCAGTGCTACCGGGAGATGGAGGGGGAGGCTTC
GTCTGCGATACTGGGAGCACTAGAGGCCACTATGGCGACATTCAGGGGGC
AGGTATGCTTGACACTCGTAGTCGAGTTTTCTGTCAGTCGATGGCGTTGA
ACTCTCCCCATATAGAAGTAGTCTACATGGTTCCGATATTCCCCAGACGG
TTCAAGACACCTGTGAGGTCACACCGCAGTGCGTGTGTTGGTCACATATG
GACTACAACCGGTCATCGAAATGTAGTGGGAGAGAGTAAAAGGGTAAAAG
GGACCTGTTCTTGTCCTTTCCGCTGTGTTGACCGTGACACTGTTCGTTGT
GGTACATATGAATCGTATCGTGCAGGTGTTGATCATGACCGGCAGGAACG
CTGAGTGGCTGGCTTGCCGCGCCAAACGATGCCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7023:4431..5814+

>mRNA_L-elsbetiae_contig7023.15826.1 ID=mRNA_L-elsbetiae_contig7023.15826.1|Name=mRNA_L-elsbetiae_contig7023.15826.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=522bp|location=Sequence derived from alignment at L-elsbetiae_contig7023:4431..5814+ (Laminarionema elsbetiae ELsaHSoW15)
CGAGGCGAACCCGGCGGGGTAGGAAACGAAGAAGGGCAACGGGACGAGTC
CGTCATGGTCGGCGCAATGCAAGGGTGGAAAGCTGCAGTGAACGCGTTGG
ATCAGAGCCAAAGCGAGGCGAACCCGGCGGGGTAGGAAACGAAGAAGGGC
AACGGGACGAGTCCGTCATGGTCGGCGCAATGCAAGGGTGGAAAGCTGCA
GTGAACGCGTTGGATCAGAGCCAAAGAGAACTGCAGTGCTACCGGGAGAT
GGAGGGGGAGGCTTCGTCTGCGATACTGGGAGCACTAGAGGCCACTATGG
CGACATTCAGGGGGCAGAGAACTGCAGTGCTACCGGGAGATGGAGGGGGA
GGCTTCGTCTGCGATACTGGGAGCACTAGAGGCCACTATGGCGACATTCA
GGGGGCAGGTGTTGATCATGACCGGCAGGAACGCTGAGTGGCTGGCTTGC
CGCGCCAAACGATGCGTGTTGATCATGACCGGCAGGAACGCTGAGTGGCT
GGCTTGCCGCGCCAAACGATGC
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