mRNA_L-elsbetiae_contig7019.15818.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7019.15818.1
Unique NamemRNA_L-elsbetiae_contig7019.15818.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7019.15818.1 vs. uniprot
Match: D7FJT0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJT0_ECTSI)

HSP 1 Score: 362 bits (930), Expect = 1.790e-121
Identity = 209/342 (61.11%), Postives = 233/342 (68.13%), Query Frame = 1 
Query:   25 RRRSLPGSIQHGPAVSLE--HRPGTAPADACRAGGVQRKHEREDTWPMEARPG-DSGALEQEEWVKASWKKGERRVEIKLIAEASDLTFDDARIVALRLYNHFNWLPQLRERSGQLHTVVGRERRLSLSLVRKEVPA---QAAQRFPRDGTTDSKNEGSYVTAEEGGVCDAKDKFNRYVRGLCVVCNEGSFDQMLDVLFRAYSVARDDFTITRNEMAAILAKHVVYEGSEDPTMERERVYRWLKRQFIHLTTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGRYPDGG-FISWDGARELLRRGPHCLENSLAIDLPVLSKDLWSADLVDVGRTRLSSSLQ 1029
            RR +L GS Q  P   L   H   TAP + CR G  + K E ++T   EAR G D  ALEQEEWVK SWKKGE R EIKLIAEAS L FDDARIVALRLYNHFNWLPQL+ERS QL  VVGRERRLSL+LVR E  A    +A +    G  ++   GSY  AE GG    K++FNRYV+G+CVVCNEGSFDQ+LD+LFRAYS ARDD TITRNEMAAIL+KHVVYE SEDPT E++RVYRWLKRQF+HL                                AGRY DGG  I WD ARELLRRGP  L +S A+DLP LSKDLWSADLVD+GRT L SSLQ
Sbjct:   16 RRYTLAGSAQRPPFSPLSPVHHSCTAPEEGCREGEGRWKSEAQETPLAEARTGGDLSALEQEEWVKVSWKKGECREEIKLIAEASGLAFDDARIVALRLYNHFNWLPQLQERSEQLLAVVGRERRLSLTLVRNEAFALSQASATQKSMTGRDEAAKTGSYGAAEGGGCDTTKEQFNRYVKGMCVVCNEGSFDQVLDLLFRAYSTARDDCTITRNEMAAILSKHVVYEDSEDPTEEKDRVYRWLKRQFVHLAPTACRTTNLGTATTTITSSGDVAA-------AGRYQDGGGCIGWDSARELLRRGPQRLVDSFAVDLPCLSKDLWSADLVDLGRTSLMSSLQ 350
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BLAST of mRNA_L-elsbetiae_contig7019.15818.1 vs. uniprot
Match: A0A6H5L3R7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3R7_9PHAE)

HSP 1 Score: 331 bits (849), Expect = 1.920e-108
Identity = 207/408 (50.74%), Postives = 236/408 (57.84%), Query Frame = 1 
Query:    7 DISPSLRRRSLPGSIQHGPAVSLE--HRPGTAPADACRAGGVQRKHEREDTWPMEARPG-DSGALEQEEWVKASWKKGERRVEIKLIAEASDLTFDDARIVALRLYNHFNWLPQLRERSGQLHTVVGRERRLSLSLVRKEVPA---QAAQRFPRDGTTDSKNEGSYVTAEEGGVCDAKDKFNRYVRGLCVVCNEGSFDQMLDVLFRAYSVARDDFTITRNEMAAILAKHVVYEGSE------------------------------------------------------------DPTMERERVYRWLKRQFIHLTTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGRYPDGG-FISWDGARELLRRGPHCLENSLAIDLPVLSKDLWSADLVDVGRTRLSSSLQ 1029
            D+S + RR +L GS Q  P   L   HR   AP + CR G  +   E ++T P EAR G D  ALEQEEWVK SWKKGE R EIKLIAEAS L FDDARIVALRLYNHFNWL QL+ERS QL  V+GRERRL L+LVR E  A    +A      G  ++   GSY  AE GG    K++FNRYV+G+CVVCNEGSFDQ+LD+LFRAYS ARDD TITRNEMAAIL+KHVVYE SE                                                            DPT E++RVYRWLKRQF+HL                                AG+Y +GG  +SWD ARELLRRGP  L +SLA+DLP LSKDLWSADLVD+GRT L SSLQ
Sbjct:    5 DVSRT-RRYTLSGSAQRPPFSPLSPVHRSCIAPEEGCREGEGRWNSEAQETQPAEARTGGDLSALEQEEWVKVSWKKGECREEIKLIAEASGLAFDDARIVALRLYNHFNWLLQLQERSEQLLVVIGRERRLFLTLVRNEALALSQASATHKAMAGRDEAAKTGSYGAAEGGGCDTTKEQFNRYVKGMCVVCNEGSFDQVLDLLFRAYSTARDDCTITRNEMAAILSKHVVYEDSEGLYLKFFWCVAVNNMRSSFAETPWEREPMDITHSSSSADCPNVRRHQTLTCAKTCAKPQQDPTEEKDRVYRWLKRQFVHLAPTTSRTTNLGTATTMIASSGHVAA-------AGKYQEGGGCVSWDSARELLRRGPQRLMDSLAVDLPCLSKDLWSADLVDLGRTNLMSSLQ 404
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7019.15818.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FJT0_ECTSI1.790e-12161.11Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L3R7_9PHAE1.920e-10850.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7019contigL-elsbetiae_contig7019:5677..8080 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-06_010290.1
Exons4
Model size1032
Cds size1032
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7019.15818.1prot_L-elsbetiae_contig7019.15818.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7019 5677..8080 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816779.411259-CDS-L-elsbetiae_contig7019:5676..60121622816779.411259-CDS-L-elsbetiae_contig7019:5676..6012Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7019 5677..6012 -
1691683806.8977478-CDS-L-elsbetiae_contig7019:5676..60121691683806.8977478-CDS-L-elsbetiae_contig7019:5676..6012Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7019 5677..6012 -
1622816779.4228337-CDS-L-elsbetiae_contig7019:6527..67571622816779.4228337-CDS-L-elsbetiae_contig7019:6527..6757Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7019 6528..6757 -
1691683806.9100676-CDS-L-elsbetiae_contig7019:6527..67571691683806.9100676-CDS-L-elsbetiae_contig7019:6527..6757Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7019 6528..6757 -
1622816779.4345357-CDS-L-elsbetiae_contig7019:7295..74611622816779.4345357-CDS-L-elsbetiae_contig7019:7295..7461Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7019 7296..7461 -
1691683806.9218903-CDS-L-elsbetiae_contig7019:7295..74611691683806.9218903-CDS-L-elsbetiae_contig7019:7295..7461Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7019 7296..7461 -
1622816779.446962-CDS-L-elsbetiae_contig7019:7780..80801622816779.446962-CDS-L-elsbetiae_contig7019:7780..8080Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7019 7781..8080 -
1691683806.9313998-CDS-L-elsbetiae_contig7019:7780..80801691683806.9313998-CDS-L-elsbetiae_contig7019:7780..8080Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7019 7781..8080 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7019.15818.1

>prot_L-elsbetiae_contig7019.15818.1 ID=prot_L-elsbetiae_contig7019.15818.1|Name=mRNA_L-elsbetiae_contig7019.15818.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=344bp
MGDISPSLRRRSLPGSIQHGPAVSLEHRPGTAPADACRAGGVQRKHERED
TWPMEARPGDSGALEQEEWVKASWKKGERRVEIKLIAEASDLTFDDARIV
ALRLYNHFNWLPQLRERSGQLHTVVGRERRLSLSLVRKEVPAQAAQRFPR
DGTTDSKNEGSYVTAEEGGVCDAKDKFNRYVRGLCVVCNEGSFDQMLDVL
FRAYSVARDDFTITRNEMAAILAKHVVYEGSEDPTMERERVYRWLKRQFI
HLTTAASSTAASEPIVDSEQRRGVPAAAAAAAAAAGRYPDGGFISWDGAR
ELLRRGPHCLENSLAIDLPVLSKDLWSADLVDVGRTRLSSSLQ*
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mRNA from alignment at L-elsbetiae_contig7019:5677..8080-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7019.15818.1 ID=mRNA_L-elsbetiae_contig7019.15818.1|Name=mRNA_L-elsbetiae_contig7019.15818.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2404bp|location=Sequence derived from alignment at L-elsbetiae_contig7019:5677..8080- (Laminarionema elsbetiae ELsaHSoW15)
ATGGGAGATATCTCTCCTTCACTCAGGCGACGTTCCTTGCCCGGCAGCAT
TCAGCATGGGCCTGCTGTCTCCCTTGAGCACCGCCCGGGCACCGCCCCTG
CAGATGCCTGTCGAGCGGGTGGGGTTCAAAGGAAGCATGAGCGAGAGGAT
ACGTGGCCGATGGAGGCGCGGCCAGGAGACTCGGGTGCACTCGAGCAAGA
GGAATGGGTGAAGGCGTCGTGGAAGAAAGGCGAGCGCAGGGTGGAGATCA
AGCTCATCGCCGAGGCTTCGGATCTGACGTTCGACGACGCTCGAATCGTG
GTGAGTGTCGAGCCAACACCTGTGAGAAGCGCCCGCACAAGCAGTAAGCA
TCCTGATTCATGATTTCTTGTCGTAAACTTCTACGGATCTTTATACTTCG
CATGTGTTGGCATACGGTATGTTGGGCACGCAGGTCCTTGTTCGCTTCCT
CAACACACATCTCTCACCCAGACCAGAGTAATTTCCAGCACCCCCGGTGA
GTATTTTGCTTCTACGTGTAGACCACCCGTTTATACGGTGTTCTTGCGCA
ACGAAGTTGCCATACATTCCCAACAGAGAAGTATTGATTTATATTGTGAT
CTTCTATTCGTCGGGGCAGGCGCTACGTTTGTACAACCACTTCAACTGGC
TTCCCCAGCTCCGAGAGCGGTCGGGACAGCTCCACACGGTGGTGGGCAGA
GAAAGGCGCCTTTCCCTATCCCTCGTCAGAAAAGAGGTCCCTGCTCAAGC
CGCGCAGAGGTTCCCCAGAGACGGCACGACTGACAGTGCCGGAGGGGCTA
AAACAGGGGGGGCGCAGCACGAGTCGACAGGTGAGACGGCAGGGGGCAAA
GAAGCGCCCACTGCTTGCGCCAAGAGTGATGGGGTTATGTGTACATTTGC
TTGGTAAGCTTGGTTGCTATGCTCAGCCTATAAGGCGTGCCGTACTTCCG
GTTTTCCAATGTACCGCGTGCCAATGTGCCGCGTGATGCTCATTTTCTTA
TTTTTGCATGGGTATGGCTGTTATTGGGTGCTTACAAAACTGACCCACAT
TTGTAGATAATATGTATGGTACGTGGCGATTGATCTGCGGCCATATTTAG
ATTCAGCTTATCTGTACAGCAGTGCACCTTCTTCTGTTGGTGGCCCCCTA
AAACGCGCGACCAGGAACGCTGTGCGGTGGTGCAGCGCATATCAATAGCA
TGGTTTTCGCTGCCAAGCTTTAGACACATACAAACTCGTTCGTCCGACCT
TGAGGTTATTATTCCACCCTACTTCACTGCTTGACTCGGCCCCTGGAAAC
CCGCGGCGTTTAACGTGAGCTAGGCAAAAACGAGGGTTCCTATGTAACCG
CGGAAGAAGGAGGCGTTTGCGACGCCAAGGATAAATTCAATCGCTACGTT
CGGGGACTGTGCGTGGTCTGCAACGAGGGCAGCTTTGATCAAATGCTGGA
CGTACTTTTCAGGGCGTACTCTGTCGCAAGGGACGACTTCACCATCACCC
GCAATGAGATGGCGGCAATTCTTGCGAAGCACGTCGTCTACGAGGGCTCA
GAGGTATACAGACTACATACATACTGCGGAACTTTTAACTTTTAACCAAC
AGCCAAGAGTTGAGCCGGGCGAGTACGCAAGGGACTGTTTTGACTGCTTC
ATATCGAATTTGTTTCCAAGTATTCAGTGTTGACCGTCGCATGGTTTTCG
CAGTGGAAGCAGCGAAGGTACGTCGGCCGAATTGAGTTGGAGGACCGTCT
AGATGGATAGTTCCTCGAGATTTCCAGGCTGTAAATACCCGTTGCCTTCG
GGCGCGTAACGGATGAATGGGTGTAGATACGGTTCGTACCCCCTTTCTCG
TACCCTTTTTTTTATTTTTTTTATTTCTCGGACGATCACGGAAACCGTTG
TGTATCGGTCCTCCGAAAGTCAGCCGTGTATTTGCTCGTCAAAGTACCTT
GCCGATATGTTCTTCTTGGCTGCTTCGTTCAGGAGGGAAACCCAAAGACG
TTCCTGCTGACGCTCCTTGATTTGGGTCGGAACATCATGACCCCGACCTG
ACAATTTGCCTGAACCAGGACCCAACCATGGAGCGAGAGCGCGTGTACAG
GTGGCTGAAACGACAGTTCATTCACCTGACAACCGCGGCCTCTTCAACAG
CGGCCTCGGAACCCATTGTAGACTCTGAACAGCGCCGGGGGGTACCAGCA
GCAGCAGCAGCAGCAGCAGCAGCCGCGGGTAGATATCCGGACGGCGGTTT
CATAAGCTGGGACGGCGCTCGAGAGCTACTGCGGCGGGGGCCGCATTGCT
TGGAGAACTCCCTGGCGATAGACTTGCCTGTCCTGTCCAAGGACCTGTGG
TCTGCGGACCTTGTTGATGTAGGCAGGACCCGCCTCTCGTCATCGTTGCA
GTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7019:5677..8080-

>mRNA_L-elsbetiae_contig7019.15818.1 ID=mRNA_L-elsbetiae_contig7019.15818.1|Name=mRNA_L-elsbetiae_contig7019.15818.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2064bp|location=Sequence derived from alignment at L-elsbetiae_contig7019:5677..8080- (Laminarionema elsbetiae ELsaHSoW15)
ATGGGAGATATCTCTCCTTCACTCAGGCGACGTTCCTTGCCCGGCAGCAT
TCAGCATGGGCCTGCTGTCTCCCTTGAGCACCGCCCGGGCACCGCCCCTG
CAGATGCCTGTCGAGCGGGTGGGGTTCAAAGGAAGCATGAGCGAGAGGAT
ACGTGGCCGATGGAGGCGCGGCCAGGAGACTCGGGTGCACTCGAGCAAGA
GGAATGGGTGAAGGCGTCGTGGAAGAAAGGCGAGCGCAGGGTGGAGATCA
AGCTCATCGCCGAGGCTTCGGATCTGACGTTCGACGACGCTCGAATCGTG
ATGGGAGATATCTCTCCTTCACTCAGGCGACGTTCCTTGCCCGGCAGCAT
TCAGCATGGGCCTGCTGTCTCCCTTGAGCACCGCCCGGGCACCGCCCCTG
CAGATGCCTGTCGAGCGGGTGGGGTTCAAAGGAAGCATGAGCGAGAGGAT
ACGTGGCCGATGGAGGCGCGGCCAGGAGACTCGGGTGCACTCGAGCAAGA
GGAATGGGTGAAGGCGTCGTGGAAGAAAGGCGAGCGCAGGGTGGAGATCA
AGCTCATCGCCGAGGCTTCGGATCTGACGTTCGACGACGCTCGAATCGTG
GCGCTACGTTTGTACAACCACTTCAACTGGCTTCCCCAGCTCCGAGAGCG
GTCGGGACAGCTCCACACGGTGGTGGGCAGAGAAAGGCGCCTTTCCCTAT
CCCTCGTCAGAAAAGAGGTCCCTGCTCAAGCCGCGCAGAGGTTCCCCAGA
GACGGCACGACTGACAGCGCTACGTTTGTACAACCACTTCAACTGGCTTC
CCCAGCTCCGAGAGCGGTCGGGACAGCTCCACACGGTGGTGGGCAGAGAA
AGGCGCCTTTCCCTATCCCTCGTCAGAAAAGAGGTCCCTGCTCAAGCCGC
GCAGAGGTTCCCCAGAGACGGCACGACTGACAGCAAAAACGAGGGTTCCT
ATGTAACCGCGGAAGAAGGAGGCGTTTGCGACGCCAAGGATAAATTCAAT
CGCTACGTTCGGGGACTGTGCGTGGTCTGCAACGAGGGCAGCTTTGATCA
AATGCTGGACGTACTTTTCAGGGCGTACTCTGTCGCAAGGGACGACTTCA
CCATCACCCGCAATGAGATGGCGGCAATTCTTGCGAAGCACGTCGTCTAC
GAGGGCTCAGAGGCAAAAACGAGGGTTCCTATGTAACCGCGGAAGAAGGA
GGCGTTTGCGACGCCAAGGATAAATTCAATCGCTACGTTCGGGGACTGTG
CGTGGTCTGCAACGAGGGCAGCTTTGATCAAATGCTGGACGTACTTTTCA
GGGCGTACTCTGTCGCAAGGGACGACTTCACCATCACCCGCAATGAGATG
GCGGCAATTCTTGCGAAGCACGTCGTCTACGAGGGCTCAGAGGACCCAAC
CATGGAGCGAGAGCGCGTGTACAGGTGGCTGAAACGACAGTTCATTCACC
TGACAACCGCGGCCTCTTCAACAGCGGCCTCGGAACCCATTGTAGACTCT
GAACAGCGCCGGGGGGTACCAGCAGCAGCAGCAGCAGCAGCAGCAGCCGC
GGGTAGATATCCGGACGGCGGTTTCATAAGCTGGGACGGCGCTCGAGAGC
TACTGCGGCGGGGGCCGCATTGCTTGGAGAACTCCCTGGCGATAGACTTG
CCTGTCCTGTCCAAGGACCTGTGGTCTGCGGACCTTGTTGATGTAGGCAG
GACCCGCCTCTCGTCATCGTTGCAGTAGGACCCAACCATGGAGCGAGAGC
GCGTGTACAGGTGGCTGAAACGACAGTTCATTCACCTGACAACCGCGGCC
TCTTCAACAGCGGCCTCGGAACCCATTGTAGACTCTGAACAGCGCCGGGG
GGTACCAGCAGCAGCAGCAGCAGCAGCAGCAGCCGCGGGTAGATATCCGG
ACGGCGGTTTCATAAGCTGGGACGGCGCTCGAGAGCTACTGCGGCGGGGG
CCGCATTGCTTGGAGAACTCCCTGGCGATAGACTTGCCTGTCCTGTCCAA
GGACCTGTGGTCTGCGGACCTTGTTGATGTAGGCAGGACCCGCCTCTCGT
CATCGTTGCAGTAG
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