mRNA_L-elsbetiae_contig7012.15813.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7012.15813.1
Unique NamemRNA_L-elsbetiae_contig7012.15813.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7012.15813.1 vs. uniprot
Match: D7G8X8_ECTSI (GYF domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8X8_ECTSI)

HSP 1 Score: 73.2 bits (178), Expect = 3.710e-14
Identity = 31/32 (96.88%), Postives = 32/32 (100.00%), Query Frame = 1 
Query:   10 QTNEAGDPIEPFNLRNERDMGYFDTNGNFVWK 105
            +TNEAGDPIEPFNLRNERDMGYFDTNGNFVWK
Sbjct:  138 RTNEAGDPIEPFNLRNERDMGYFDTNGNFVWK 169
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BLAST of mRNA_L-elsbetiae_contig7012.15813.1 vs. uniprot
Match: A0A6H5JI10_9PHAE (GYF domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI10_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 9.450e-14
Identity = 30/32 (93.75%), Postives = 32/32 (100.00%), Query Frame = 1 
Query:   10 QTNEAGDPIEPFNLRNERDMGYFDTNGNFVWK 105
            +TNEAGDPIEPFNLRNERDMGY+DTNGNFVWK
Sbjct:  127 RTNEAGDPIEPFNLRNERDMGYYDTNGNFVWK 158
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BLAST of mRNA_L-elsbetiae_contig7012.15813.1 vs. uniprot
Match: A0A836CCE7_9STRA (GYF domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCE7_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 2.050e-9
Identity = 24/30 (80.00%), Postives = 27/30 (90.00%), Query Frame = 1 
Query:   16 NEAGDPIEPFNLRNERDMGYFDTNGNFVWK 105
            NEAG+ +EPFNL+NER  GYFDTNGNFVWK
Sbjct:   27 NEAGEVLEPFNLKNERQEGYFDTNGNFVWK 56
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BLAST of mRNA_L-elsbetiae_contig7012.15813.1 vs. uniprot
Match: A0A4D9CQJ9_9STRA (GYF domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CQJ9_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 1.640e-7
Identity = 22/35 (62.86%), Postives = 27/35 (77.14%), Query Frame = 1 
Query:    1 LRRQTNEAGDPIEPFNLRNERDMGYFDTNGNFVWK 105
            +  + NEAGD +EPFNL+NER  G+FD  GNFVWK
Sbjct:   53 MEEEFNEAGDKMEPFNLKNERTEGFFDETGNFVWK 87
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BLAST of mRNA_L-elsbetiae_contig7012.15813.1 vs. uniprot
Match: A0A444EBB2_ENSVE (Uncharacterized protein n=1 Tax=Ensete ventricosum TaxID=4639 RepID=A0A444EBB2_ENSVE)

HSP 1 Score: 45.8 bits (107), Expect = 2.960e-5
Identity = 19/25 (76.00%), Postives = 21/25 (84.00%), Query Frame = 1 
Query:   25 GDPIEPFNLRNERDMGYFDTNGNFV 99
            G PIEPFNL+ ER+ GYFD NGNFV
Sbjct:   15 GIPIEPFNLKQEREEGYFDANGNFV 39
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BLAST of mRNA_L-elsbetiae_contig7012.15813.1 vs. uniprot
Match: A0A7S3YEZ5_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YEZ5_HETAK)

HSP 1 Score: 47.0 bits (110), Expect = 5.340e-5
Identity = 18/30 (60.00%), Postives = 25/30 (83.33%), Query Frame = 1 
Query:   16 NEAGDPIEPFNLRNERDMGYFDTNGNFVWK 105
            N+AG+ +E FNL+++R  GYFD +GNFVWK
Sbjct:  123 NDAGEILESFNLKSDRQDGYFDASGNFVWK 152
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BLAST of mRNA_L-elsbetiae_contig7012.15813.1 vs. uniprot
Match: A0A812X5W5_SYMMI (Cd2bp2 protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812X5W5_SYMMI)

HSP 1 Score: 46.6 bits (109), Expect = 8.700e-5
Identity = 18/30 (60.00%), Postives = 26/30 (86.67%), Query Frame = 1 
Query:   16 NEAGDPIEPFNLRNERDMGYFDTNGNFVWK 105
            N+AG+ +EPFNLR+ER+ G+FD N N+VW+
Sbjct:   38 NDAGEVMEPFNLRDEREGGHFDENMNYVWQ 67
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7012.15813.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7G8X8_ECTSI3.710e-1496.88GYF domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JI10_9PHAE9.450e-1493.75GYF domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A836CCE7_9STRA2.050e-980.00GYF domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A4D9CQJ9_9STRA1.640e-762.86GYF domain-containing protein n=2 Tax=Monodopsidac... [more]
A0A444EBB2_ENSVE2.960e-576.00Uncharacterized protein n=1 Tax=Ensete ventricosum... [more]
A0A7S3YEZ5_HETAK5.340e-560.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A812X5W5_SYMMI8.700e-560.00Cd2bp2 protein (Fragment) n=1 Tax=Symbiodinium mic... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7012contigL-elsbetiae_contig7012:9975..10079 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.9
Seed ortholog evalue1.6e-11
Seed eggNOG ortholog2880.D7G8X8
KEGG koko:K13099
KEGG ModuleM00354
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.GYF domain
EggNOG OGs2D0TF@1,2SFEN@2759
Ec32 ortholog descriptionGYF
Ec32 orthologEc-15_004640.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00002,ko01009,ko03041
Exons1
Model size105
Cds size105
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816778.9696236-CDS-L-elsbetiae_contig7012:9974..100791622816778.9696236-CDS-L-elsbetiae_contig7012:9974..10079Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7012 9975..10079 +
1691683806.551726-CDS-L-elsbetiae_contig7012:9974..100791691683806.551726-CDS-L-elsbetiae_contig7012:9974..10079Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7012 9975..10079 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7012.15813.1prot_L-elsbetiae_contig7012.15813.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7012 9975..10079 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7012.15813.1

>prot_L-elsbetiae_contig7012.15813.1 ID=prot_L-elsbetiae_contig7012.15813.1|Name=mRNA_L-elsbetiae_contig7012.15813.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=35bp
LRRQTNEAGDPIEPFNLRNERDMGYFDTNGNFVWK
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mRNA from alignment at L-elsbetiae_contig7012:9975..10079+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7012.15813.1 ID=mRNA_L-elsbetiae_contig7012.15813.1|Name=mRNA_L-elsbetiae_contig7012.15813.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=105bp|location=Sequence derived from alignment at L-elsbetiae_contig7012:9975..10079+ (Laminarionema elsbetiae ELsaHSoW15)
TTGCGTCGACAGACTAATGAGGCGGGGGACCCCATCGAGCCGTTCAACCT
CCGCAACGAGCGCGACATGGGATACTTCGACACCAACGGGAACTTCGTGT
GGAAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7012:9975..10079+

>mRNA_L-elsbetiae_contig7012.15813.1 ID=mRNA_L-elsbetiae_contig7012.15813.1|Name=mRNA_L-elsbetiae_contig7012.15813.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=210bp|location=Sequence derived from alignment at L-elsbetiae_contig7012:9975..10079+ (Laminarionema elsbetiae ELsaHSoW15)
TTGCGTCGACAGACTAATGAGGCGGGGGACCCCATCGAGCCGTTCAACCT
CCGCAACGAGCGCGACATGGGATACTTCGACACCAACGGGAACTTCGTGT
GGAAGTTGCGTCGACAGACTAATGAGGCGGGGGACCCCATCGAGCCGTTC
AACCTCCGCAACGAGCGCGACATGGGATACTTCGACACCAACGGGAACTT
CGTGTGGAAG
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