mRNA_L-elsbetiae_contig7010.15811.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7010.15811.1
Unique NamemRNA_L-elsbetiae_contig7010.15811.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7010.15811.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7010contigL-elsbetiae_contig7010:8255..9524 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-20_004790.1
Exons1
Model size1270
Cds size399
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7010.15811.1prot_L-elsbetiae_contig7010.15811.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7010 8671..9069 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816778.8611295-UTR-L-elsbetiae_contig7010:8254..86701622816778.8611295-UTR-L-elsbetiae_contig7010:8254..8670Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7010 8255..8670 +
1691683806.483754-UTR-L-elsbetiae_contig7010:8254..86701691683806.483754-UTR-L-elsbetiae_contig7010:8254..8670Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7010 8255..8670 +
1622816778.8815603-UTR-L-elsbetiae_contig7010:9069..95241622816778.8815603-UTR-L-elsbetiae_contig7010:9069..9524Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7010 9070..9524 +
1691683806.5081284-UTR-L-elsbetiae_contig7010:9069..95241691683806.5081284-UTR-L-elsbetiae_contig7010:9069..9524Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7010 9070..9524 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816778.8717163-CDS-L-elsbetiae_contig7010:8670..90691622816778.8717163-CDS-L-elsbetiae_contig7010:8670..9069Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7010 8671..9069 +
1691683806.4947383-CDS-L-elsbetiae_contig7010:8670..90691691683806.4947383-CDS-L-elsbetiae_contig7010:8670..9069Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7010 8671..9069 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7010.15811.1

>prot_L-elsbetiae_contig7010.15811.1 ID=prot_L-elsbetiae_contig7010.15811.1|Name=mRNA_L-elsbetiae_contig7010.15811.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=133bp
MWWTAVDQDLIVFVPRRLANCSLQRSQSSLILLLLPACGHRRKYQMVLFG
GYHTAERFFDDDRLTAHFPGPGSYGLGSTSTVEGATKYARRLIEDGVVRP
DGSPIVFRERDSWVRGKEGPKVRTLGLINVRG*
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mRNA from alignment at L-elsbetiae_contig7010:8255..9524+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7010.15811.1 ID=mRNA_L-elsbetiae_contig7010.15811.1|Name=mRNA_L-elsbetiae_contig7010.15811.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1270bp|location=Sequence derived from alignment at L-elsbetiae_contig7010:8255..9524+ (Laminarionema elsbetiae ELsaHSoW15)
GCACTGTGTAGATCGATGCGGAACAAATCTGGGACTCTGTGTGGAGGTAG
ACGTTGTTCTCATGCTTGGCTGTCTTGGGGCTACCCGCTGTCCAATTGTT
TTAAAGAAAATTTCTACCATCAATAATACAGCTCTCTAGCGCTCTCCCTA
CCGTTGCCCCAGAAGGACAGCCAGTTCCATACACTCTTTTCAGGTGTACA
TCGTCGATAAAATCAGAATCTGGGATTCTGTATGGAGGTAGACGTTGTTC
TCATGCTTGGTCCGAAGCGGAACAACCCTGCGAGCAAAACCTCACATGTA
CCGACCGTCTCATCTCTCAACTAATTTCATAATTACTCTCAACCGAGTGA
GGGCTCGCATGACGGCGATCAAGATTGGTGCTGCGGCAATGTTTTTCTGC
AGAGTGATTGACCTTTATGTGGTGGACTGCAGTTGATCAGGATCTGATCG
TATTCGTCCCAAGGCGGCTTGCGAATTGCTCTCTACAACGCAGTCAGTCA
TCACTGATATTACTACTCCTTCCTGCCTGTGGACACAGGAGGAAATATCA
GATGGTTTTGTTCGGAGGCTATCACACTGCGGAGCGGTTCTTCGACGACG
ACAGGCTAACCGCACACTTTCCTGGGCCCGGCTCATACGGTTTAGGGTCT
ACGTCGACGGTTGAGGGGGCTACAAAATATGCTAGACGACTCATCGAGGA
TGGCGTCGTCAGACCAGATGGCAGCCCGATTGTTTTCAGGGAACGAGATT
CCTGGGTTAGGGGGAAAGAAGGCCCAAAGGTGAGGACACTGGGGTTGATA
AATGTCCGCGGGTGAATGCAAGTGCATTCTTCCCTGTCAAGTGTTCGTAT
CACGCTGTCAACCGGACAGCTCTCCGCTTAATGGTACCTACCGTAGGTGA
CACGAGATACCCCACCCCCTGGACCGACTTTTAGAGCTCCATTACTCCGT
AACGAAGAGAGTGCCGGCACCAAACGACGCGTTTTCGGACAGCCCTCGAC
TAGATCTTTCCAATGCCACCCCCTTTCGGCATGACCCTCTTCTTGCTGGG
GAGGAGCCGAGCTTTGAAAATCTGTCCAGGGGGTGTGGTATCTTGTGTCA
CCCACGGCGGTACAGGTAGTGTAGTACTTCGAAGTAGATATTGTAGTCTA
GATGCGTACAACCAGAGCTTGCATCTCCCACGTGAATTGCGTCCCTTTCG
CCAACCGCTGTTTTTATCTAAACAGGGTCTTGCGAGCTTGTCTGTTGGGA
ATGCTTTCATCTGTCCCGCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7010:8255..9524+

>mRNA_L-elsbetiae_contig7010.15811.1 ID=mRNA_L-elsbetiae_contig7010.15811.1|Name=mRNA_L-elsbetiae_contig7010.15811.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=798bp|location=Sequence derived from alignment at L-elsbetiae_contig7010:8255..9524+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTGGTGGACTGCAGTTGATCAGGATCTGATCGTATTCGTCCCAAGGCG
GCTTGCGAATTGCTCTCTACAACGCAGTCAGTCATCACTGATATTACTAC
TCCTTCCTGCCTGTGGACACAGGAGGAAATATCAGATGGTTTTGTTCGGA
GGCTATCACACTGCGGAGCGGTTCTTCGACGACGACAGGCTAACCGCACA
CTTTCCTGGGCCCGGCTCATACGGTTTAGGGTCTACGTCGACGGTTGAGG
GGGCTACAAAATATGCTAGACGACTCATCGAGGATGGCGTCGTCAGACCA
GATGGCAGCCCGATTGTTTTCAGGGAACGAGATTCCTGGGTTAGGGGGAA
AGAAGGCCCAAAGGTGAGGACACTGGGGTTGATAAATGTCCGCGGGTGAA
TGTGGTGGACTGCAGTTGATCAGGATCTGATCGTATTCGTCCCAAGGCGG
CTTGCGAATTGCTCTCTACAACGCAGTCAGTCATCACTGATATTACTACT
CCTTCCTGCCTGTGGACACAGGAGGAAATATCAGATGGTTTTGTTCGGAG
GCTATCACACTGCGGAGCGGTTCTTCGACGACGACAGGCTAACCGCACAC
TTTCCTGGGCCCGGCTCATACGGTTTAGGGTCTACGTCGACGGTTGAGGG
GGCTACAAAATATGCTAGACGACTCATCGAGGATGGCGTCGTCAGACCAG
ATGGCAGCCCGATTGTTTTCAGGGAACGAGATTCCTGGGTTAGGGGGAAA
GAAGGCCCAAAGGTGAGGACACTGGGGTTGATAAATGTCCGCGGGTGA
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