mRNA_L-elsbetiae_contig70.15796.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig70.15796.1
Unique NamemRNA_L-elsbetiae_contig70.15796.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig70.15796.1 vs. uniprot
Match: D7G4G1_ECTSI (Heat shock protein 40 like protein/ DnaJ domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4G1_ECTSI)

HSP 1 Score: 152 bits (385), Expect = 2.080e-39
Identity = 96/188 (51.06%), Postives = 117/188 (62.23%), Query Frame = 2
Query:    8 MDVSMLESQMSRGMAELGTAATVSAVPVSAVPQQQ------WTG-QPGYSPVTPVPAGQAPPIAGSSLDIQAIMNAGLMRGMLMHPAATTAAGPPQQVLMCNLCGNMDPNLFVDAGQGYARCHGVYANGALCKYILPWPAGSLPEYKPEIAITQQEA-VGLVDPPHQXXXXXXXXXLSGSNYAGGVAY 547
            +DVS+LE+ MS GMA+ G                       W   Q GY+P+TP+  GQ P    SS+D+QAIMNAG++RGMLM P A  AAG   +V+MCN CGNM+PNLF DAGQGYARCHGVYANGALCK I+PWPAGSLP+YK ++   QQ+A V  ++P HQ           G    GG AY
Sbjct: 1232 VDVSLLEAHMSTGMADDGGVXXXXXXXXXXXXXXXXXXXXXWAAAQLGYAPLTPL-TGQTP----SSVDVQAIMNAGVIRGMLMPPPA--AAG---RVMMCNFCGNMNPNLFSDAGQGYARCHGVYANGALCKGIMPWPAGSLPQYKHDLG--QQDATVAALNPSHQVLQQQAGAAPGGYADVGGSAY 1407          
BLAST of mRNA_L-elsbetiae_contig70.15796.1 vs. uniprot
Match: A0A6H5KUW2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUW2_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 3.480e-25
Identity = 57/102 (55.88%), Postives = 64/102 (62.75%), Query Frame = 2
Query:  245 AATTAAGPPQQVLMCNLCGNMDPNLFVDAGQGYARCHGVYANGALCKYILPWPAGSLPEYKPEIAITQQEA-VGLVDPPHQXXXXXXXXXLSGSNYAGGVAY 547
            AA     P   V+MCN CGNM+PNLF DAGQGYARCHGVYANGALCK I+PWP GSLP YK  +   QQ+A +  +DP HQ           G    GG AY
Sbjct: 1235 AAQFGYAPLTPVMMCNFCGNMNPNLFSDAGQGYARCHGVYANGALCKGIMPWPVGSLPRYKHNLG--QQDATITALDPSHQVLQQQAGAAPGGYADVGGSAY 1334          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig70.15796.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G4G1_ECTSI2.080e-3951.06Heat shock protein 40 like protein/ DnaJ domain co... [more]
A0A6H5KUW2_9PHAE3.480e-2555.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig70contigL-elsbetiae_contig70:28310..33753 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score155.2
Seed ortholog evalue3e-35
Seed eggNOG ortholog2880.D7G4G1
KEGG koko:K09537
Hectar predicted targeting categoryother localisation
EggNOG free text desc.toxin transport
EggNOG OGsCOG2214@1,KOG0691@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03110
Exons5
Model size568
Cds size561
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig70.15796.1prot_L-elsbetiae_contig70.15796.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig70 28310..33746 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816777.1842709-CDS-L-elsbetiae_contig70:28309..283931622816777.1842709-CDS-L-elsbetiae_contig70:28309..28393Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig70 28310..28393 -
1691683805.1940207-CDS-L-elsbetiae_contig70:28309..283931691683805.1940207-CDS-L-elsbetiae_contig70:28309..28393Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig70 28310..28393 -
1622816777.1977003-CDS-L-elsbetiae_contig70:29383..294891622816777.1977003-CDS-L-elsbetiae_contig70:29383..29489Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig70 29384..29489 -
1691683805.2070363-CDS-L-elsbetiae_contig70:29383..294891691683805.2070363-CDS-L-elsbetiae_contig70:29383..29489Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig70 29384..29489 -
1622816777.209655-CDS-L-elsbetiae_contig70:31927..320371622816777.209655-CDS-L-elsbetiae_contig70:31927..32037Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig70 31928..32037 -
1691683805.2181299-CDS-L-elsbetiae_contig70:31927..320371691683805.2181299-CDS-L-elsbetiae_contig70:31927..32037Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig70 31928..32037 -
1622816777.2221644-CDS-L-elsbetiae_contig70:32659..327791622816777.2221644-CDS-L-elsbetiae_contig70:32659..32779Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig70 32660..32779 -
1691683805.2271554-CDS-L-elsbetiae_contig70:32659..327791691683805.2271554-CDS-L-elsbetiae_contig70:32659..32779Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig70 32660..32779 -
1622816777.2336638-CDS-L-elsbetiae_contig70:33605..337461622816777.2336638-CDS-L-elsbetiae_contig70:33605..33746Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig70 33606..33746 -
1691683805.2384877-CDS-L-elsbetiae_contig70:33605..337461691683805.2384877-CDS-L-elsbetiae_contig70:33605..33746Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig70 33606..33746 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816777.247836-UTR-L-elsbetiae_contig70:33746..337531622816777.247836-UTR-L-elsbetiae_contig70:33746..33753Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig70 33747..33753 -
1691683805.247596-UTR-L-elsbetiae_contig70:33746..337531691683805.247596-UTR-L-elsbetiae_contig70:33746..33753Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig70 33747..33753 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig70.15796.1

>prot_L-elsbetiae_contig70.15796.1 ID=prot_L-elsbetiae_contig70.15796.1|Name=mRNA_L-elsbetiae_contig70.15796.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=187bp
MDVSMLESQMSRGMAELGTAATVSAVPVSAVPQQQWTGQPGYSPVTPVPA
GQAPPIAGSSLDIQAIMNAGLMRGMLMHPAATTAAGPPQQVLMCNLCGNM
DPNLFVDAGQGYARCHGVYANGALCKYILPWPAGSLPEYKPEIAITQQEA
VGLVDPPHQQAGGGGGGGLSGSNYAGGVAYGHQPSYS
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mRNA from alignment at L-elsbetiae_contig70:28310..33753-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig70.15796.1 ID=mRNA_L-elsbetiae_contig70.15796.1|Name=mRNA_L-elsbetiae_contig70.15796.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5444bp|location=Sequence derived from alignment at L-elsbetiae_contig70:28310..33753- (Laminarionema elsbetiae ELsaHSoW15)
GACCGCGATGGACGTGAGCATGCTGGAGTCGCAGATGTCTCGAGGCATGG CGGAGCTTGGCACCGCCGCCACGGTGTCTGCGGTGCCGGTGTCTGCGGTG CCGCAGCAGCAGTGGACGGGGCAGCCGGGCTACTCTCCCGTGACACCGGT GAGGAAGGCGTCAGGAAAAACGCGGCTGTTGTTGTTGCTGTTTCTTCACA TCAAAAACCGTTCCGATCCCTCCGCCAAGTATACCTCCAACACTTGATGC GGTCAATTCCCGTGGTCACAGGCTACTAAATTGTAAACGAGGTTACGAAT ACAATGGAGGGATGCTACTGTAGATATATTTGAATATTTAGTTCTCAAGC GCCCATGTTGTGCGGGACAACCTCTCTCGCCCACTTTTCGTTCGTACTCG GCGACATTTTTTTTCCCTCGCGCCTGTCTCGTTCGAAACATCGCTTTGCC TCGGTAGTTTCGCCCGATGTGGTGTTTTTAACGGAGTGTTTCGCCGTATT CTATCTACGTGATGTACGTATATGTATATATACGTCGGCGTGTTTCGACC TTTTAGTATGGCCGGGCGCGCTTGTACCGTACTTTTTTTTTTTTTTTCTA TGGCGTCGTCGAGTGTGCCCTGCTTTTTTGACCACGGTCCCTCATGGGTG TTTTTTTAGATTAAATAGAGAGCTACTATGTATATAGAGAGCTACTATGT ATCTGTTGTGAGAAACAACGACAGCAAATAACCCCCCGTGGCTTGTCGTA CATACCCCAGACCCGTCTTGTCTCGCCAAGCCGAACAATATCGTGGCCGC CCGCCCTTAACAGGTATTTGGTCCTTTCTACCGCCGCCTCCATTTCCTTT TTCTGTCGTCCCTGCCTCGCTGTCTGCCCTCTCTTTCTCTCTCTATCTTC TTCGCTCATGTTGATCTCCCCCCCCCTCCCCCCACCCCCTGATGTGATTT TACCTGTGGGGCCTCTACGAAAAGGTCCCTGCTGGGCAGGCCCCCCCTAT CGCCGGCTCTAGCCTAGACATCCAGGCTATCATGAACGCCGGATTGATGA GGGGTATGCTGATGCACCCGGCGGCTACGACGGCTGCAGGCCCGGTGAGC ACGTGGCTCCGAGCGCTGGGCAGGCGGGGCCCCCAGGATTTTCGACTCTT AATTTACTTTCTATTTTCTGAACATGCCGCTTTTTGTTGACCGGCCAATT CGCGTAAGATTTTGTTCACGTTGGAGGTATATCTACGTAAAGATGTTTTC GCGTAAGATTTTGTGCAGTGCATGCAGGAGGTATCTATGATACGTGGATA TGTTAACACGTAAGATTTTGTTCATGTTGGAGGTATTCACGTAAATATGT TTTCCCTGGGGGTGGACGGGCGGGGAGAGGTGCAACACGCATTGCGTCCA TCGAGTTTTTTTGTGTGTTTTTGGCAGGGTGGCCTTGGCTGCTGGTTTTC CCTCTTTTCACGGCTGCGCGCACGTTCTGGCGCTGCTGCTGCCACTGCTG TGTTCCCCTCCTGCCTGCTTTTGTTGCCCCTGTCCCACTGCTGATTTTGT TACCCCTGCCCCACTGCTGCTGCACCTTCGTCTGACGCCTGGGTGGCTAG ACTCAAGCACTCGCTATCGTCGAGAGTGCAGACGCACCACGCGTCTTCTT ACTTCCATACTCACGCACGCACCGTCGTTCCTTCGACGTGTTAAACTTGG CCCAAACCCTCGACAGCCGCAGCAGGTGCTCATGTGCAACCTGTGCGGGA ACATGGACCCCAACCTCTTTGTGGACGCGGGGCAGGGGTACGCGCGCTGC CACGGGGTGTACGCCAACGGGGCCCTGTGAGTAAATAGACCTCGCAAATC TTAAATCTGTGCGGTGGAGATGTTGAACCCTTCTGATATTTGGGTTGTTT TTCTGCTCGCTTCGCCAAATATTACGTCTCTGTATGGAATACCGTTTGGA CCCCATATCGAGTCCTTGCTCTGGTGTGGGGGTAGGTTCCATCTTTGATT CATTGTTTATTTTTAAATAGATGCACATGATACCGTGGAGACACCGCTCG AATGCCGTCGTCCGGGGCTCTTGGCACCGCTACAACATGCCTGGATCATG TCGACCAGTCGCTGGCCTTTCCCTTTTCGGGCTCCTCTGCGAGTCGATGC TTCGAAGCTCATACCGTATTAAGGTGGCGCAAAATACCACCCACCCCCCG GACGCATTTTCTAAGCTCGGTTCCTCCCCAGCGAGAAGAGTACCAGTGCC GGAAGGGGGTGGCGTTGGAAGTATCTAGTCGAGGGCCGTCCGAGAGTGTG TCGTTTGGTGCTGGCACCCTCTTCGTTACGGAGGAGTCGAGCTTTGAAGT TCTTTCCAGGGGGGGTGGTGTCTTGCGTCACCTACGGTACTGCATACACA TGGAGGATGGGTTTAGTCTAGGTTAGTTACCGTAGGTGACACAAGATACC AAACCCCCTGGACATAATTTCAAAGCTCGATTCCTCTCCAGCAAGAAGAG CGCCAGTGCCGAAAGGAGGTGGCGTTGGAAAGATCTAGTCGAGGGCTGTC CGAAAATGTGGCGTTTGGTGCTGGCACCCTCTTCGTTACGGGGTAATGAA GCTGTACAAATCGGTCCAGGGGGTGTGATATCTTGTGTCACCTACGGTAG TCTCTTGATGTTCTTCCTCGGGTCGTGGGAACCAAGGCACAGCACACCTG ACGCCTGCCGGCGTGTGCGCTTGGCCCCTTTGCTCCTTTTTTTTTGTCGG TGTGCGGATGTGGAGCAATTTGCCTTCCCGCAGCATGATGCCCTTGCAGC GGCAGAGAATCGTGACGCCGAGACGATCACACACACGACCCCGTCTGCAA TAAAATGGCGGCATATAAGCCCGGGGTCGATTTGACAGTCTCGTATTTTG CTTCCGTCTGCAACCAATGGCCACACGAGAACCCCGTGGTCGACTACCGT AATCATGCGGGTCATCGCACCCCCGTGTTACGTAGCGTTTTTCTATAGCC TATTTCTCCACAACCAGGAGGGTACCACTGCCGAAAAGGGTGATTTTCGA AACGTCTCGTCGGGGGTTTTCCAGAGAGGTATCAGTTAGTGTTCGCACCC TCCTGGTTGTGGAGAAATACGCTGTAGAAAAACGCTAACACGGGGGTGCG ATAACCCGCATGATCACGGTACAGCAGCCGTCTTACGCTTGCCGACCCCC CTGAGCTTGCCAAATGCTGCATACTCTTCTTGCAACGGCCAGCGGTGACT ACCAGCACAGCACTAAAAATAACAAGAAAACGCCTCTTTCTATTTCTTCC TCTGCTTGTCTCAAGCTATAGAGCCCCACCGCTTTGTATCGCTAACCCCT AATCTGCACCATAGGTGCCAAGTACATCCCGTATATGACACAAGATAACA CACCCCCTGGACCGATTTCGAAAGCTCGATTGCTCGACAGCGAGAAGAGG TCCAGTCCCGAAAAGGGCGGCGTTGGAAAGACCCCATCAAGAGCTGTCCG AAAACGTGTCGTTTGGCATTAGAATCACAACTCGTTGCAGAGTAACCGAG CTTTGAAAATCGGTCCAGGGGGTGTCTTATCTTGTATCATATACGGTACA TTTGACCGCCAAAGGCAACAGGCCTGTTGTTGTCGACGCCATAAATAATT TCGCCCGACACTTGCCGATCGCGATGCCTATTATTCGTAAGCAACATAAT ATCTAAATATGTTACATCAGGTCAATACGCGGAGTCAAAATATCACCACC CCGCAGAGGGCTCATGTCAGAGGAGGAATTATGAGATACAGTAGTAGAAA GCGTCTCGTCTTCGGAAAGAGACACAGTGTAGATGGCTGTAGCCTATCCC TACAACTCTCCGCACGGCAAAAAAGAGCCGAGAACCTCGGAACACCTCTG CTTTTAATTAATGCATACAAATGTCAGCAGCCTACGTCCAGTCTGTGAAA AAGTCGTTCCAGAGGGAACTGTTGTAGGCATACTAACCCCTTTCTTTCCG TCCAAGACATACTCGCACAAAATCCATAATCCATTTATACACAGTTCGTT GGTGAAAAATTCATTTCGAACTGCTTTTGGGCTGGACTGTGAAAACATGC GGGCATTTTTGGAAAGCCGACACAAACTTCAAGCGAGGCTCCGTGATGTT CAGCGGGGGTATGCGATTATTCTTCGAGCAAGGCCTATACTGATCAATGG GTACCCCTTCCCGCAGCCCTAACCTATCCCTACAACGGTGTCTGCGTAAA TACATGCCTAACAGGTGCAAGTACATCTTGCCGTGGCCAGCCGGGTCGCT CCCTGAGTACAAGCCGGAGATCGCCATCACTCAGCAGGAGGCGGTTGGTC TCGTAGACCCCCCTCACCAGGTGAGGTGCCTCTCGTCCGTGTTTCGTTTT GGTAATAATATTATTAATACTACCACCCTAGTCTTTTTCGTCGCTGTTTC TTGCGTACTTTTCTGATGGTGCCGATAATGATAATCTTTCCGTTGCTGTA TTTTGCGTAGGTTTCTCATAATAGTAATGATACTAGTCTTTTCGTTATTG CTGTGTTTTTCATTGATGTATACAAATGTCAGCAAGCTACGTCCTCTCTG AGAAAAAGTGGTATTTTTGCGTAGTTTTGGAGCTTTGAGGGGGGCTGGCT ACTGTTTCGTCCTGTTGGGTGTTTGTTGTGTAACGTTTGGTCTTTGTGTT GTTGTTGTTGTTAATACTTTGTACATAAAATGTTGGGATGTTTGTCGTTC TTTGTCTGTTTGGAGATTGGGACGAGCTCAATATGGGTACTGCGTCGGGC CTGCTAGCGTCGGTTGAAGGGAATAAACGACTTGGTCGTTTCGCACGCGT ACAGAAATCCGTCATGGTGTAGTCTCTCTAGTCTCTCTGCACACAGCCCG CCGCGACGCAGTTTCTTTTCAGCGTCGTCCATCTGTCGGGACCCGGTACC ACTCCCCCGTCCACCCGGAAAAACAAACCTAAGAACGTTACACGGGTTGA AGGTAGCATTCAACCAATCACGGGTGGACGCTATTGGGGCACTCTCCGCA ACCACGTCATCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC CCCCCCCCCCCCCCCCGCCCCCCCCCCCCCCNNNNNNNNNNCCCGAAAAA AAAAACAAAAAAACTTCCCCCGGGTGGAGGGACACTTCCACCAACCCCCG GGGGGCCGCTTTGGGGCCCCCCCCCCCACCCCCCCCCCCCCCCCCCCCCC CCCCCACCCCACCCCGTCACCCGACTTTCGTCCCCGTTGCTACTTCCTCT TGTCCCGATCCCACATGCGTACTCCTACGAAATAATATCCACAACCTGCG ATTGCCACAGCAGGCCGGCGGCGGCGGCGGCGGCGGCCTCTCCGGCTCCA ACTACGCGGGGGGCGTCGCCTACGGCCACCAGCCCTCGTACTCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig70:28310..33753-

>mRNA_L-elsbetiae_contig70.15796.1 ID=mRNA_L-elsbetiae_contig70.15796.1|Name=mRNA_L-elsbetiae_contig70.15796.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1122bp|location=Sequence derived from alignment at L-elsbetiae_contig70:28310..33753- (Laminarionema elsbetiae ELsaHSoW15)
ATGGACGTGAGCATGCTGGAGTCGCAGATGTCTCGAGGCATGGCGGAGCT
TGGCACCGCCGCCACGGTGTCTGCGGTGCCGGTGTCTGCGGTGCCGCAGC
AGCAGTGGACGGGGCAGCCGGGCTACTCTCCCGTGACACCGATGGACGTG
AGCATGCTGGAGTCGCAGATGTCTCGAGGCATGGCGGAGCTTGGCACCGC
CGCCACGGTGTCTGCGGTGCCGGTGTCTGCGGTGCCGCAGCAGCAGTGGA
CGGGGCAGCCGGGCTACTCTCCCGTGACACCGGTCCCTGCTGGGCAGGCC
CCCCCTATCGCCGGCTCTAGCCTAGACATCCAGGCTATCATGAACGCCGG
ATTGATGAGGGGTATGCTGATGCACCCGGCGGCTACGACGGCTGCAGGCC
CGGTCCCTGCTGGGCAGGCCCCCCCTATCGCCGGCTCTAGCCTAGACATC
CAGGCTATCATGAACGCCGGATTGATGAGGGGTATGCTGATGCACCCGGC
GGCTACGACGGCTGCAGGCCCGCCGCAGCAGGTGCTCATGTGCAACCTGT
GCGGGAACATGGACCCCAACCTCTTTGTGGACGCGGGGCAGGGGTACGCG
CGCTGCCACGGGGTGTACGCCAACGGGGCCCTCCGCAGCAGGTGCTCATG
TGCAACCTGTGCGGGAACATGGACCCCAACCTCTTTGTGGACGCGGGGCA
GGGGTACGCGCGCTGCCACGGGGTGTACGCCAACGGGGCCCTGTGCAAGT
ACATCTTGCCGTGGCCAGCCGGGTCGCTCCCTGAGTACAAGCCGGAGATC
GCCATCACTCAGCAGGAGGCGGTTGGTCTCGTAGACCCCCCTCACCAGGT
GCAAGTACATCTTGCCGTGGCCAGCCGGGTCGCTCCCTGAGTACAAGCCG
GAGATCGCCATCACTCAGCAGGAGGCGGTTGGTCTCGTAGACCCCCCTCA
CCAGCAGGCCGGCGGCGGCGGCGGCGGCGGCCTCTCCGGCTCCAACTACG
CGGGGGGCGTCGCCTACGGCCACCAGCCCTCGTACTCCCAGGCCGGCGGC
GGCGGCGGCGGCGGCCTCTCCGGCTCCAACTACGCGGGGGGCGTCGCCTA
CGGCCACCAGCCCTCGTACTCC
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