mRNA_L-elsbetiae_contig70.15795.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig70.15795.1
Unique NamemRNA_L-elsbetiae_contig70.15795.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig70.15795.1 vs. uniprot
Match: A0A6H5KUW2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUW2_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 1.200e-20
Identity = 44/47 (93.62%), Postives = 46/47 (97.87%), Query Frame = 2 
Query:    5 PAALSTEKRDQLYAQLVDMGFAIADCDRAFKEVGYEIDPVLNWLFSS 145
            PAALS EKRDQLYAQLVDMGFAIADCD+AFKEVGYEIDPVLNWLFS+
Sbjct: 1800 PAALSAEKRDQLYAQLVDMGFAIADCDKAFKEVGYEIDPVLNWLFSN 1846
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BLAST of mRNA_L-elsbetiae_contig70.15795.1 vs. uniprot
Match: D7G4G1_ECTSI (Heat shock protein 40 like protein/ DnaJ domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4G1_ECTSI)

HSP 1 Score: 64.3 bits (155), Expect = 1.050e-9
Identity = 30/32 (93.75%), Postives = 31/32 (96.88%), Query Frame = 2 
Query:    5 PAALSTEKRDQLYAQLVDMGFAIADCDRAFKE 100
            PAALS EKRDQLYAQLVDMGFAIADCD+AFKE
Sbjct: 1860 PAALSAEKRDQLYAQLVDMGFAIADCDKAFKE 1891
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig70.15795.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KUW2_9PHAE1.200e-2093.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G4G1_ECTSI1.050e-993.75Heat shock protein 40 like protein/ DnaJ domain co... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig70contigL-elsbetiae_contig70:25026..25925 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size328
Cds size189
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig70.15795.1prot_L-elsbetiae_contig70.15795.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig70 25165..25925 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816777.0283754-UTR-L-elsbetiae_contig70:25025..251641622816777.0283754-UTR-L-elsbetiae_contig70:25025..25164Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig70 25026..25164 -
1691683805.0900636-UTR-L-elsbetiae_contig70:25025..251641691683805.0900636-UTR-L-elsbetiae_contig70:25025..25164Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig70 25026..25164 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816777.040755-CDS-L-elsbetiae_contig70:25164..252911622816777.040755-CDS-L-elsbetiae_contig70:25164..25291Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig70 25165..25291 -
1691683805.1025536-CDS-L-elsbetiae_contig70:25164..252911691683805.1025536-CDS-L-elsbetiae_contig70:25164..25291Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig70 25165..25291 -
1622816777.0512443-CDS-L-elsbetiae_contig70:25863..259251622816777.0512443-CDS-L-elsbetiae_contig70:25863..25925Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig70 25864..25925 -
1691683805.1132128-CDS-L-elsbetiae_contig70:25863..259251691683805.1132128-CDS-L-elsbetiae_contig70:25863..25925Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig70 25864..25925 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig70.15795.1

>prot_L-elsbetiae_contig70.15795.1 ID=prot_L-elsbetiae_contig70.15795.1|Name=mRNA_L-elsbetiae_contig70.15795.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=63bp
GPRGAFDGEERPAVRPACGHGLRDSRLRPCFQGGGLRDRSSPELAVLQRL
GPLVPCPGAFVV*
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mRNA from alignment at L-elsbetiae_contig70:25026..25925-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig70.15795.1 ID=mRNA_L-elsbetiae_contig70.15795.1|Name=mRNA_L-elsbetiae_contig70.15795.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=900bp|location=Sequence derived from alignment at L-elsbetiae_contig70:25026..25925- (Laminarionema elsbetiae ELsaHSoW15)
GGCCCCCGCGGCGCTTTCGACGGAGAAGAGAGACCAGCTGTACGCCCAGC
TTGTGGACATGGGTGAGTGGCACTCTGCTTGTCTTCGGTATGTCCGTCCC
TTTTGGGTGCTATCATTTTGTTTGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGTGCGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGCTCTCTGAGTGG
TCTGGTAGACTGCGTGTCTATCTGCCGCTGCTTCCGGAAGACGGTCCGGG
GGTCGCCGCCCATCCCTCAAGCGATTTTTTGCGTTCCGTGTGAGTTTACT
GAGTGTTATTACCGGGGGTGGCGCGTCGCCTCCATACGTACACCCGCGGT
GTTGGCACGATCCGACCCCAACACGAGCTTTATTTGCTCCCTCCTATGTA
TCGCCGTCTGCACAGGGTTCCAGTCCCACTCGTATTTTACTAGTATGTGC
TCCGCCGAGTACCTCTCTCTCATCTCCCCTCTCCGCACGTTGTCGTCGTT
CGATTTCCTTCCTTTCCCCCCCCCCCCCCCCGCCAACACACCGCCTGCAC
CACGGCGCCCCTTCTCTTCCCCGACCCCATCCAGGCTTCGCGATAGCCGA
CTGCGACCGTGCTTTCAAGGAGGTGGGCTACGAGATCGATCCAGTCCTGA
ACTGGCTGTTCTCCAGCGTCTAGGCCCGTTAGTTCCATGTCCCGGCGCGT
TCGTCGTGTAGGCGTGATGTAGCGCGAGAACCCAATCCAGTCCTGAACTG
GCTGTTCTCCAACGTTGAGGCTTGTTTGTTCCATCTCTCGGCGCGTTCGT
TGTGTCGGCGGGGTGTAGCGCGAGGGCCCAAGGAGCCCTTCTACAAGTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig70:25026..25925-

>mRNA_L-elsbetiae_contig70.15795.1 ID=mRNA_L-elsbetiae_contig70.15795.1|Name=mRNA_L-elsbetiae_contig70.15795.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=378bp|location=Sequence derived from alignment at L-elsbetiae_contig70:25026..25925- (Laminarionema elsbetiae ELsaHSoW15)
GGCCCCCGCGGCGCTTTCGACGGAGAAGAGAGACCAGCTGTACGCCCAGC
TTGTGGACATGGGGCCCCCGCGGCGCTTTCGACGGAGAAGAGAGACCAGC
TGTACGCCCAGCTTGTGGACATGGGCTTCGCGATAGCCGACTGCGACCGT
GCTTTCAAGGAGGTGGGCTACGAGATCGATCCAGTCCTGAACTGGCTGTT
CTCCAGCGTCTAGGCCCGTTAGTTCCATGTCCCGGCGCGTTCGTCGTGTA
GGCTTCGCGATAGCCGACTGCGACCGTGCTTTCAAGGAGGTGGGCTACGA
GATCGATCCAGTCCTGAACTGGCTGTTCTCCAGCGTCTAGGCCCGTTAGT
TCCATGTCCCGGCGCGTTCGTCGTGTAG
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