mRNA_L-elsbetiae_contig7.15793.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7.15793.1
Unique NamemRNA_L-elsbetiae_contig7.15793.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig7.15793.1 vs. uniprot
Match: D8LB23_ECTSI (Heat shock protein 40 like protein/ DnaJ domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB23_ECTSI)

HSP 1 Score: 286 bits (731), Expect = 5.140e-88
Identity = 174/314 (55.41%), Postives = 224/314 (71.34%), Query Frame = 2 
Query:   29 EQPDHYGALGISEDATPTEVKDAFRKLAMQLHPDTEGDAGNRDTFESITAAYEVLSDPGKRSTYDQGLAMRSFVDKVKAGKWGNVMSAVANLGAAATSAGVSVGVAAAEPLAKDLARSFEELTGSAESADPIARAQQVANRAKLEAERKFKAFRRRAEDFMAEAAQLEASRMARLEEIAEWNMVLAERKSELALAERNLEESKSQALKAIEVANARKEKXXXXXXXXRQARAARDKFMQVSSSTQRRVSSAEATVAGAEQRLDEALKALEAARSSLDTCSEDLLVLDGKREQVVSEAEAREEEWSEAKQETMSS 970
            ++ D+Y ALG+   ATPTE+K+A+RK+AM++HPDT+    NRD FES TAAYEVLSDPGK+STYDQGLAMRSFVDKVKAGKWGNVMSAVA+LGAAATS GV              AR  EELTGS E  DPI R QQVANRAKLEAERK  AF RRAE+F  EA++LE +   +LEE  EWN  L ER+ E+A A ++LE ++S   +A EVA+ RK          R++RAAR++F+Q S++++++VS+AEATV  AE+RL EALK L+ AR  L    E+   L+G R+QV+++  + E  + EAK+ T+ S
Sbjct:  134 DEVDYYAALGLKVGATPTEIKNAYRKIAMRVHPDTKDGINNRDIFESTTAAYEVLSDPGKKSTYDQGLAMRSFVDKVKAGKWGNVMSAVASLGAAATSVGVXXXXXXXXXXXXXXARGLEELTGSVE-VDPITRKQQVANRAKLEAERKRGAFERRAEEFSTEASKLEETMKTQLEEQKEWNKALVERRIEVASARKSLESTESITKEAAEVASDRKASELAAAEKARRSRAAREEFLQASANSEKKVSTAEATVTAAERRLWEALKTLDTARHMLALTYEEATALEGTRDQVMADTASAEGVFEEAKEATLES 446
[Close]
BLAST of mRNA_L-elsbetiae_contig7.15793.1 vs. uniprot
Match: A0A6H5JEI0_9PHAE (HSP40 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEI0_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 1.900e-19
Identity = 44/75 (58.67%), Postives = 58/75 (77.33%), Query Frame = 2 
Query:    5 AVDDMDSE-EQPDHYGALGISEDATPTEVKDAFRKLAMQLHPDTEGDAGNRDTFESITAAYEVLSDPGKRSTYDQ 226
            A+D + SE ++ D+Y  LG+   A+P E+K+A+RK+AM +HPDT+    NRD FES TAAYEVLSDPGK+STYDQ
Sbjct:   40 AMDVVASEADEVDYYAVLGLKVGASPAEIKNAYRKIAMLVHPDTKDGINNRDIFESATAAYEVLSDPGKKSTYDQ 114
[Close]
BLAST of mRNA_L-elsbetiae_contig7.15793.1 vs. uniprot
Match: A0A7W1QC90_9ACTN (DnaJ domain-containing protein (Fragment) n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7W1QC90_9ACTN)

HSP 1 Score: 83.2 bits (204), Expect = 1.070e-15
Identity = 37/63 (58.73%), Postives = 46/63 (73.02%), Query Frame = 2 
Query:   38 DHYGALGISEDATPTEVKDAFRKLAMQLHPDTEGDAGNRDTFESITAAYEVLSDPGKRSTYDQ 226
            D Y  LGIS DA+PTE+K A+RKLA  LHPD  GD  +++ F+ IT AYE+L+DP KR  YDQ
Sbjct:    6 DLYEILGISRDASPTEIKAAYRKLARTLHPDVNGDPADQERFKEITGAYEILADPAKRQRYDQ 68
[Close]
BLAST of mRNA_L-elsbetiae_contig7.15793.1 vs. uniprot
Match: A0A7V9K6Q9_9ACTN (Chaperone protein DnaJ n=1 Tax=Nocardioidaceae bacterium TaxID=1871072 RepID=A0A7V9K6Q9_9ACTN)

HSP 1 Score: 86.7 bits (213), Expect = 1.940e-15
Identity = 35/64 (54.69%), Postives = 50/64 (78.12%), Query Frame = 2 
Query:   38 DHYGALGISEDATPTEVKDAFRKLAMQLHPDTEGDAGNRDTFESITAAYEVLSDPGKRSTYDQG 229
            D+YG LG+++DA+P ++K A+R+LA QLHPD   D G ++ F+ ++AAYEVLSDP KR  YD+G
Sbjct:    3 DYYGTLGVAQDASPEQIKKAYRRLARQLHPDVNPDPGTQERFKEVSAAYEVLSDPAKRDLYDRG 66
[Close]
BLAST of mRNA_L-elsbetiae_contig7.15793.1 vs. uniprot
Match: A0A835ZL26_9STRA (DnaJ domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZL26_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 2.890e-15
Identity = 51/115 (44.35%), Postives = 65/115 (56.52%), Query Frame = 2 
Query:   38 DHYGALGISEDATPTEVKDAFRKLAMQLHPDT---EGDAGNR--DTFESITAAYEVLSDPGKRSTYDQGLAMRSFVDKVKAGKWGNVMSAVANLGAAATSAGVSVGVAAAEPLAK 367
            D Y ALG++ +A+   VK A+R    + HPD    +GD  +   D F  +  AY VLSDPGKRSTYDQG AM+  V  +  G WG+ M+AV  +G A       V V  A PLAK
Sbjct:    1 DFYKALGVATNASGDAVKAAYRTRVKECHPDAMYRKGDTSDAALDEFYLLEEAYSVLSDPGKRSTYDQGRAMKRMVAWLDKGDWGSAMAAVGKVGRA-------VAVDIAVPLAK 108
[Close]
BLAST of mRNA_L-elsbetiae_contig7.15793.1 vs. uniprot
Match: A0A838K818_9ACTN (Chaperone protein DnaJ n=1 Tax=Nocardioidaceae bacterium TaxID=1871072 RepID=A0A838K818_9ACTN)

HSP 1 Score: 85.1 bits (209), Expect = 6.610e-15
Identity = 35/64 (54.69%), Postives = 49/64 (76.56%), Query Frame = 2 
Query:   38 DHYGALGISEDATPTEVKDAFRKLAMQLHPDTEGDAGNRDTFESITAAYEVLSDPGKRSTYDQG 229
            D+YG LG+ +DA+P ++K A+R+LA QLHPD   D   +D F+ ++AAYEVLSDP KR+ YD+G
Sbjct:    3 DYYGTLGVDQDASPEQIKKAYRRLARQLHPDVNPDPETQDRFKEVSAAYEVLSDPAKRNLYDRG 66
[Close]
BLAST of mRNA_L-elsbetiae_contig7.15793.1 vs. uniprot
Match: A0A4P5SFC9_9ACTN (Chaperone protein DnaJ n=2 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A4P5SFC9_9ACTN)

HSP 1 Score: 84.7 bits (208), Expect = 8.790e-15
Identity = 38/65 (58.46%), Postives = 48/65 (73.85%), Query Frame = 2 
Query:   35 PDHYGALGISEDATPTEVKDAFRKLAMQLHPDTEGDAGNRDTFESITAAYEVLSDPGKRSTYDQG 229
            PD+Y  LG+S DATP E+K A+RKLA +LHPD   D  +++ F+ ITAAYEVLSDP KR  +D G
Sbjct:    6 PDYYALLGVSRDATPDEIKKAYRKLARELHPDVNPDLKSQERFKIITAAYEVLSDPEKRQMFDLG 70
[Close]
BLAST of mRNA_L-elsbetiae_contig7.15793.1 vs. uniprot
Match: A0A524B618_9ACTO (Chaperone protein DnaJ n=1 Tax=Actinomycetales bacterium mxb001 TaxID=1962179 RepID=A0A524B618_9ACTO)

HSP 1 Score: 83.6 bits (205), Expect = 2.140e-14
Identity = 36/64 (56.25%), Postives = 48/64 (75.00%), Query Frame = 2 
Query:   38 DHYGALGISEDATPTEVKDAFRKLAMQLHPDTEGDAGNRDTFESITAAYEVLSDPGKRSTYDQG 229
            D+Y  LG+S +A+P E+K A+RKLA +LHPD   D G+++ F+ +TAAYEVLSDP KR  YD G
Sbjct:    4 DYYAMLGVSREASPDEIKRAYRKLARELHPDVNQDPGSQERFKEVTAAYEVLSDPEKRQMYDLG 67
[Close]
BLAST of mRNA_L-elsbetiae_contig7.15793.1 vs. uniprot
Match: A0A6I3AXD8_9ACTN (Chaperone protein DnaJ n=5 Tax=root TaxID=1 RepID=A0A6I3AXD8_9ACTN)

HSP 1 Score: 83.6 bits (205), Expect = 2.170e-14
Identity = 37/65 (56.92%), Postives = 48/65 (73.85%), Query Frame = 2 
Query:   35 PDHYGALGISEDATPTEVKDAFRKLAMQLHPDTEGDAGNRDTFESITAAYEVLSDPGKRSTYDQG 229
            PD+Y  LG++ DATP E+K A+RKLA +LHPD   D  +++ F+ ITAAYEVLSDP KR  +D G
Sbjct:    6 PDYYALLGVARDATPDEIKKAYRKLARELHPDVNPDLQSQERFKIITAAYEVLSDPEKRQMFDLG 70
[Close]
BLAST of mRNA_L-elsbetiae_contig7.15793.1 vs. uniprot
Match: A0A7G5LZX1_9ACTN (Chaperone protein DnaJ n=4 Tax=Mumia TaxID=1546255 RepID=A0A7G5LZX1_9ACTN)

HSP 1 Score: 83.6 bits (205), Expect = 2.230e-14
Identity = 36/64 (56.25%), Postives = 48/64 (75.00%), Query Frame = 2 
Query:   38 DHYGALGISEDATPTEVKDAFRKLAMQLHPDTEGDAGNRDTFESITAAYEVLSDPGKRSTYDQG 229
            D+YG LG++ DATP E+K A+RKLA  LHPD   D   ++ F+++T AYEVLSDP KR+ YD+G
Sbjct:    4 DYYGTLGVNRDATPEEIKKAYRKLARSLHPDVNPDPEAQERFKTVTVAYEVLSDPEKRAFYDRG 67
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7.15793.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LB23_ECTSI5.140e-8855.41Heat shock protein 40 like protein/ DnaJ domain co... [more]
A0A6H5JEI0_9PHAE1.900e-1958.67HSP40 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
A0A7W1QC90_9ACTN1.070e-1558.73DnaJ domain-containing protein (Fragment) n=1 Tax=... [more]
A0A7V9K6Q9_9ACTN1.940e-1554.69Chaperone protein DnaJ n=1 Tax=Nocardioidaceae bac... [more]
A0A835ZL26_9STRA2.890e-1544.35DnaJ domain-containing protein n=1 Tax=Tribonema m... [more]
A0A838K818_9ACTN6.610e-1554.69Chaperone protein DnaJ n=1 Tax=Nocardioidaceae bac... [more]
A0A4P5SFC9_9ACTN8.790e-1558.46Chaperone protein DnaJ n=2 Tax=Actinomycetia bacte... [more]
A0A524B618_9ACTO2.140e-1456.25Chaperone protein DnaJ n=1 Tax=Actinomycetales bac... [more]
A0A6I3AXD8_9ACTN2.170e-1456.92Chaperone protein DnaJ n=5 Tax=root TaxID=1 RepID=... [more]
A0A7G5LZX1_9ACTN2.230e-1456.25Chaperone protein DnaJ n=4 Tax=Mumia TaxID=1546255... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7contigL-elsbetiae_contig7:79325..87634 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score292.7
Seed ortholog evalue2e-76
Seed eggNOG ortholog2880.D8LB23
KEGG koko:K09537
Hectar predicted targeting categoryother localisation
EggNOG free text desc.toxin transport
EggNOG OGsCOG2214@1,KOG0691@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03110
Ec32 ortholog descriptionHeat shock protein 40 like protein/ DnaJ domain containing protein
Ec32 orthologEc-27_005510.1
Exons9
Model size972
Cds size954
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7.15793.1prot_L-elsbetiae_contig7.15793.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7 79325..87618 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816776.8560116-CDS-L-elsbetiae_contig7:79324..793901622816776.8560116-CDS-L-elsbetiae_contig7:79324..79390Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7 79325..79390 -
1691683804.9782352-CDS-L-elsbetiae_contig7:79324..793901691683804.9782352-CDS-L-elsbetiae_contig7:79324..79390Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7 79325..79390 -
1622816776.8670468-CDS-L-elsbetiae_contig7:79840..799241622816776.8670468-CDS-L-elsbetiae_contig7:79840..79924Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7 79841..79924 -
1691683804.9903476-CDS-L-elsbetiae_contig7:79840..799241691683804.9903476-CDS-L-elsbetiae_contig7:79840..79924Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7 79841..79924 -
1622816776.8778608-CDS-L-elsbetiae_contig7:80779..808531622816776.8778608-CDS-L-elsbetiae_contig7:80779..80853Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7 80780..80853 -
1691683805.0034747-CDS-L-elsbetiae_contig7:80779..808531691683805.0034747-CDS-L-elsbetiae_contig7:80779..80853Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7 80780..80853 -
1622816776.8880231-CDS-L-elsbetiae_contig7:81811..819591622816776.8880231-CDS-L-elsbetiae_contig7:81811..81959Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7 81812..81959 -
1691683805.0145528-CDS-L-elsbetiae_contig7:81811..819591691683805.0145528-CDS-L-elsbetiae_contig7:81811..81959Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7 81812..81959 -
1622816776.8976514-CDS-L-elsbetiae_contig7:82905..830281622816776.8976514-CDS-L-elsbetiae_contig7:82905..83028Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7 82906..83028 -
1691683805.0247774-CDS-L-elsbetiae_contig7:82905..830281691683805.0247774-CDS-L-elsbetiae_contig7:82905..83028Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7 82906..83028 -
1622816776.9106846-CDS-L-elsbetiae_contig7:83903..839691622816776.9106846-CDS-L-elsbetiae_contig7:83903..83969Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7 83904..83969 -
1691683805.0344253-CDS-L-elsbetiae_contig7:83903..839691691683805.0344253-CDS-L-elsbetiae_contig7:83903..83969Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7 83904..83969 -
1622816776.9255624-CDS-L-elsbetiae_contig7:84805..849881622816776.9255624-CDS-L-elsbetiae_contig7:84805..84988Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7 84806..84988 -
1691683805.044025-CDS-L-elsbetiae_contig7:84805..849881691683805.044025-CDS-L-elsbetiae_contig7:84805..84988Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7 84806..84988 -
1622816776.9443798-CDS-L-elsbetiae_contig7:86213..863481622816776.9443798-CDS-L-elsbetiae_contig7:86213..86348Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7 86214..86348 -
1691683805.0560372-CDS-L-elsbetiae_contig7:86213..863481691683805.0560372-CDS-L-elsbetiae_contig7:86213..86348Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7 86214..86348 -
1622816776.9626787-CDS-L-elsbetiae_contig7:87543..876181622816776.9626787-CDS-L-elsbetiae_contig7:87543..87618Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7 87544..87618 -
1691683805.0656052-CDS-L-elsbetiae_contig7:87543..876181691683805.0656052-CDS-L-elsbetiae_contig7:87543..87618Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7 87544..87618 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816776.9792674-UTR-L-elsbetiae_contig7:87618..876341622816776.9792674-UTR-L-elsbetiae_contig7:87618..87634Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7 87619..87634 -
1691683805.074594-UTR-L-elsbetiae_contig7:87618..876341691683805.074594-UTR-L-elsbetiae_contig7:87618..87634Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7 87619..87634 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7.15793.1

>prot_L-elsbetiae_contig7.15793.1 ID=prot_L-elsbetiae_contig7.15793.1|Name=mRNA_L-elsbetiae_contig7.15793.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=318bp
MDSEEQPDHYGALGISEDATPTEVKDAFRKLAMQLHPDTEGDAGNRDTFE
SITAAYEVLSDPGKRSTYDQGLAMRSFVDKVKAGKWGNVMSAVANLGAAA
TSAGVSVGVAAAEPLAKDLARSFEELTGSAESADPIARAQQVANRAKLEA
ERKFKAFRRRAEDFMAEAAQLEASRMARLEEIAEWNMVLAERKSELALAE
RNLEESKSQALKAIEVANARKEKEQKAAEMARQARAARDKFMQVSSSTQR
RVSSAEATVAGAEQRLDEALKALEAARSSLDTCSEDLLVLDGKREQVVSE
AEAREEEWSEAKQETMSS
back to top

mRNA from alignment at L-elsbetiae_contig7:79325..87634-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7.15793.1 ID=mRNA_L-elsbetiae_contig7.15793.1|Name=mRNA_L-elsbetiae_contig7.15793.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=8310bp|location=Sequence derived from alignment at L-elsbetiae_contig7:79325..87634- (Laminarionema elsbetiae ELsaHSoW15)
GGCAGCGGTAGACGACATGGACAGTGAAGAGCAGCCCGACCACTACGGTG
CCCTAGGCATCTCGGAAGACGCCACTCCCACGGAGGTCAAGGTATGATAT
GCATGTTTTTTATCCTTTATTTTTTCTTCTCCCACTATTGGCTTATTCGT
CGTCTGCCCCACTGGCCCCCCTTCCTGCACTACGACTAGCTAGAGGACCT
AACCGGGGTTACACATGTTTGTATGTATGTACGCATATATGTGTGTATGC
ATGCATGTGGATGTGGGAGATGAACTACTGTTGCTCGTGCGCGGGACAGG
GCCGAGTGCTTGCGGAATCGCTCGTTTGTTTGTTGGTTGGGCCCGTGGGG
GCATGTAGGGCCGGCAGGCTCTCCTACAAATACAGCAGTAACTTTGTCCA
CAATCCTCCGTTCCACTTTGCGCCACTCTGTCGTTGACCGTATAGCAAGC
ACACCCGTCATGGTATTTTCTCTTCTCTCGGTCTCCGTCTCTGACGCCCT
CTCTCCCTTCTAACTCCGATGCGCATACATATGTATCTCTTTCTCACGCG
TTTCACCTTTAAAAACTAAACAATGAACCAAAGATGGAACCTACCCCACA
CTAGAGCAAGGGCTCGATATGGGTTTAAATCGGTATTCCATACAGTGACG
TAATATTTAGCGAAACGAGCAGGAAAGCACCTAAAATATCAAAAGAGTTC
AACATCTCCCCTGCAAAGATTTGCGAGGTCGGCCAACAAGTATTCCGGTG
GGTAGATGCCCGCCATGATGCCGCAATGTTGTCATCTACTTCAAAACCTT
TGTTTGATGTTCTCTCATCCGGGACGTGCCTCTTTTCCTGGCGCGCTGCG
CTGGTGTACCTTTTCTTGGTGTGTGTGTGTGTTGTTTTTTTTTCGTGTAT
TTACAGTACTGCATGGACAAACCACGGTACACAAGAGTACACTTCTCGCT
CGCCCCTTAAAACATGTAGCTTGTGCGGCGAATGAAAAGCAGGCGCTTTC
ACCTCGATTCCTATCAACATCTCTCCGGTGGGTGGCGACGAAACTCTCTT
ACACCGGAAACTAACGGGTTGCGATTTTTGTGCCACTGCTGCTGTAGTTG
GAGGCGGCGAGGGAAGGCTGCTTTATAGTGCGTTTTATTTGCGGTTAGTT
CTCCCTGGTACGACGTTTACACCTATGTATGTACCTTTGGGACACAGACG
CTGACTTTTTTGGTAGTTTTTTTTTTCCTAAATAAAATCCTAAAATCCCT
CTCCTGTGCGCTCGCTCTCCGCTCTCCCATCCGCAGGACGCCTTCCGCAA
GCTTGCGATGCAGCTGCACCCTGACACGGAGGGTGATGCCGGCAACAGAG
ATACGTTCGAGTCCATCACGGCGGCATACGAGGTCTTGTCGGACCCGGGG
AAACGATCCACCTACGATCAGGTATTGTACCATAGTATGTAAACATCAGT
ATGTACGTACGTTTTTTTTCTTCTTTTTTTTCCCTCCCATTATTGGCTTA
TTCGTCGTCTACCTCACTGGCCCCCTTCCTCCACTACGACTAGCTAGACG
ACCCATCCGGGGTCGCACAGGATGCATGCACGTCCATGTGTGTGTGTGCT
TCTGTGGAGATGGCTTTCGGCAGGCGATGTTTTTGCCGAGGGGGGTGGTG
GTGGTGATAGAGGGGGGGGTGTTTTTTGGTGCTGTGGGTTTCTGTGGAGG
GTTTGAGACGACGTTCCTCGGTGGCGTCTATGAGCAGCGGCATGGCGGAC
CCCAGCATGCATCTAGTTGTTTTTAAAACCTTCTTTGTGTTACTGCTGCT
GTGCAGGTTGTTGTGGTGTTTCTGTTCCTGGTTATCGTGTCGCGTGTGCG
CTGAAGCCTGCTTCTCTGTTGGTCGAGCAGTGTCTGCCAAGCCTGTGCCT
GTGGCTTGTGCCAAGCAGAGTGGGCTGGTTCTTGGCCCCGGAGCTCGTCC
ATACCTATGCTGGACTATGCTCCACCCCAAAGACTTCATTGCGGGTATTA
GCTTTGACCGGCCCATCCACTGCCGTAGAGAAGAGGAGCCAGGTGGACGC
ACAAGCTGTTCCTCAAATACTGCTGTGGCAACCGCACCAGTTGCACATCC
CACTGCCACGAACCGGTACTTACCCTTGCGCATCGCTCGAGGAACCCACA
TCTCACCCACGCTCAATACCGCCGCTGCGTGTAATTTCAACTCCAGCTCC
GCCAAAGGTTCGCGGTATGTGTGTATTGACAGTCCCGACTCCAACCCGAC
ATCCCCACTCCTAACCCTATTGTACCGTACCGTATCCCCGTGGCGTGCAA
AGCTTCTGAACTACCAGCGCTAACTAGCCCTATGCCTTCGCATAAACCCT
TTGCCTTCGCATAAACCCTTTGCCCTAACCTCTTTTCCCGAAACCGAACC
GGCGGGCCGGCCGACGCCCCCCCCCCCCCCCCCCCCCCCCCCTCACCCTT
CCCCTGCGGGCGGGGGGGGGGGGGGGGGGGGGGGCGGGTAGAGAGGGGAG
GGAGGGGGGGGGNNNNNNNNNNGCCTTCGCATAAACCCTTTCCCTTCCCA
TAAACCCTTTCCCCAACCCCTTTTTCCCCAAACCCACCCGGCGGGCCGGC
CGCCCCCCCCCCCCCCCCCCCTCTCTCGAAATACGGCGTCCCCTAGGGGT
TGGCGATGAGGAGCTTCGTGGACAAAGTCAAGGCAGGGAAGTGGGGCAAC
GTTATGTCGGCGGTGGCGAATCTCGGAGCGGCAGCCACGTCGGCAGGGGT
ATCGGTCGGGGTTGCGGCGGCGGAGCCCCTCGCGAAGGACCTGGCCCGGA
GTTTCGAGGAGTTGACAGGATCTGCGGAGGTTCGTAATGTAGCACATATG
ATACTTAAAAGTTTTTGTATTTTTGGTTGGAGGTTCTGCGCGGTTTTCTG
GGTTGACAGTGTAATTACGCTCGCAGGCGGAAAGGGCCAGGAATTCGTTT
CGCTGTTTTGGGTTGTTGTCGGTGTTGTTTCTCACATTACAATAGCTCTC
GGGTCTAAAAAAATCCATTGGGGCCCCGTGGTCACAAAAACACTTAAGGG
GGGCACCCTCGACGCCCGCGGAAGAAAACTAAAAACACGTTGGGTGAAAA
GCGATGGTGTATATGACAGATTTACCCAAGTTCTGCCTACATCTACATTG
GCCAGATTGGAAGCCCTTGTTTTTTTTTTCGGGGCTGGGAAAGCGCCGCT
AATATTGTGCACTTTTTTTTTTTTTTGTATGAGAGGAAGGCCTACGCGCT
TCGTAGAAACGCTCATGCGCATCGCTTGGCCTAGCGAGACTTGGGCGGCA
GTGTCCTCGCTCTTCGTTCACTTCCTGCCTCAAACAGCGCGGTCTGTCTG
CCCCCTCGAAGCCCGCCAGCCAGTCGGCGGCCTCGAATAGGACGGGTCGA
GGTCGAGGTCGATAACTAGACGGATGCGCGTACACACCCGCGGCCACGCT
CTCGTGTGCATAGTGCTAGTGTTGGCTCCTGCCTTGTTGGACGGTGGAGA
TCGATGGATGGAACCACATATATATGTATATACACACATATGTACGCCCC
TGCTTTCGTGCGCATAGTGTTGACTCCTGCCTTGCCTGCCTGCCTGCCTG
CCTGCCTGCCTGCCTGCCTGCCTGTCTGTCTGCGTGTGGTCTGGTTTGCG
TGTCGTTCGTTTCAGTCCGCGGACCCGATCGCGCGGGCACAGCAGGTGGC
CAACAGGGCCAAGCTCGAGGCGGAACGGAAGGTATGATTTAGATATGCAT
GTATCTATGTATGATATTCGTTCGTTTCGTGATTTTGCGACCGACCACCG
TTTATAAGAACTCGCCTTTTCAAGGTTGAATCGCCCTAAAATCCGCAGGG
TATATATATACTGTATCGGCCTTCGTGGGGCGCGTTTCTCTTTGTACCTG
GTGTAGGTTTCCAAGTTCAGCGTCGCAGCAAATGGGACCGAAGTGTACCC
AGGCCAACAGAGTAGTGGGCGATATTTTTGTTACGTGTGACAGAGACTTT
GGGTGCGAAAGTAGCGCGCGCCTGGGACTCGTTATTTCTTGTCCCGGAGC
ATTTTTTTCTTGTCTTTGTTCCACAACTTGTCATGTATGGGAGTTCGTTT
TTTTTTGCTCTTAAATATGCCCCTCTCTGGTGCCTTCATCTCGGCGTTCG
TTTTTGAGTCCTTTGTAGCAACCAGCTCTCGGTTTGGTGGGTGTTCAGGG
AGAGATTTCTCGAGAGAGAACACCTGCGACGGACGGCGGCTCCGCGGAAT
CGCTACTTTTACGTATACCCTTGGCGACGTTTTCACGTGTTCGTTCAGCT
GTCGAGCATTTATGTCAATACCTCTTCGTAGGCGGACGCGACCCGCTGCG
TATTCATTTTTTTTTTTTTTTTTTCATTTTGTGCCATTGTGCCATCTGCG
TTTTGTTCGCCTATCATAGCGTTTGATGGCGCTATATACATCTTGTAGGT
AGACCCGCCGCGGTGCTTGGTTGCTTTTTTTACACCATTTTTTTAAGTGT
AATTTGCATTTGTCTGCTTACCATGTATGGTACTCCTAGCATATATGACC
ACCTTTTGTCTCGTTGGTTGTTGTGCTTCGACCGGTGCATCGGCGACGGG
CGGCAGTTCAAGGCGTTCAGGCGGCGGGCGGAAGATTTTATGGCGGAGGC
GGCCCAGCTAGAGGCCTCGCGGATGGCGCGCCTGGAGGAGATCGCGGAGT
GGAACATGGTGCTGGCCGAGAGAAAATCAGTGAGTGTGAAGTTGGGGAAC
CGCGGGGTGGAACATGTTGCGCGCCCGAGAGAAAATTAGTGAGTGAACCT
AGGAAATCACAGAGTGGGACATGATGCTCGCCAAGAGAAGATCAACGCGC
GAGTCAGGTTAGCACAGCACATCATATTGTCGACGAAGAAAGGGTGTAGT
TTGTGTAATTACAGCAGTCAAGTGTCTTCCACTTTTCCAATATTTTGGCA
AGCGAGGCAAGTAGGCTTCACCCGCATTTTCACGAGCTTGGAGGCACCAG
CTGGTTTGGTTTGGTGTGGCTTGATCCGAATTCAAGGTTCGATATTTTTT
TTCTTGCTTTTTTTTTCCCAGGCTTGTCCAGCTGGAAGTAACCGAAAGGT
GATGTCTGAACGCATTTGATCCCATCAGGTCGGAAGTCATAGACAAGCCG
TCTATGTACGTATTTTGATTTTTCTGCCACAGTCCTGCGGTGCGCGCGCT
GAAACGCCCAGTCAAAAAAAAAAAATGGCTGATGGAGTATTTTCATACTT
CACGGTATTTGCTGCTGTAGATCACCCACGCGTGATCTCTGGGCTTTCAT
CGGCGTTTCAGACCAAGCTTTCGGCACGACAAACTGTGTGACATGAAGCA
CCAATTTGTGTTTTAGAAATGGATCAACAGACCAAGCAGCACCATGTAAA
AGGATCTTGTTGATTTGGTTTCGAGAGAGTGAAAAGACACCGGCCAAGAT
GGTTCACGGCGTCAAATCGCGCGAAAATTCGCAGCAGCAGCAGCAACAAC
AACAACAACAATAGCGAAAATTCGCAACAACAGCAACAACAACAACGACA
AGCAACACAAACAATAGCAACCCCGATCCTTTGCTACAAACAAGAGCAAA
TCGCGCGAAAAATCGCAACAACAATAACAACAACAACAACAACAAGCAGC
AACCCCAATATTTTGCTACAAACAGGAGCTCGCCTTGGCGGAGAGAAATC
TGGAGGAGTCCAAATCTCAGGCGCTGAAGGCGATCGAGGTGGCAAACGCC
CGCAAGGAGAAGGAGCAGAAGGCCGCGGAGATGGCGCGGCAAGCCAGAGC
CGCCCGGGACAAGTTCATGCAAGGTGAGAGAGACAGAGAGAGAGAGAGAG
GCAAGCGCATGCGCGTGGTGGAGAGAGATCCTCGCCTCATGATGTTGTTG
GGGCGCCGCTGAAGCTATATGGCAAGCGTTGACATATTTTGGTCCTGCCG
TAGAGCGCCACCTGCTACCGGCGCTCCCGCGGCAGAAATCATCCCCCCCC
CCCCGCCTGGGGCTGCACGCGTTGCTCTACTACACTTGGCGCGGAACCAC
CTCCATCACCGCCAACACGCATTGCTGCCCTCCGCCCGCCTCCCGCACCC
GGAAACAGCAGTTTGCCGAAGGGCGCTGGTGCTCGCTGCTCGATTTGCTC
GGGGCGTTGTGTGCTGGCTTTGGTTTTGATTTCTGGTTTTCGGGGTTGTT
GGTGTTGCGATCGTGGGAGGCGGATTGAGCAGCTTGGAGCACGTGGCGGG
TGTGTCTGATGAGTGGTGGATTCCCGCGGACGACATGTGCTCGCGTCCGG
CGTACGCGGCGGCGTCAGAGCAGGGGAAGGAGAGGGAGGAGGGAGGGATT
GGCATCAACCAATTCGGTACATACCAACGCCCAGAGACGGGTTTTGATGT
CGTTACTGCCGTGCTGACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCTTCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCCCCCCNNNGGGGGGGGGTG
GACAAAACCAATTCGGTTAAAACCACCCCCCCGAGGCGGGTTTTTGTGTT
GTTCCTGGCGGGCCGCCCCCCCCCCCCCCCCCCCCCTTCTCCTCGCCACC
GCTTTTTCCGCCGCCGTCTGTGTCCTTTCGCTCCTCCTCTCTTCCCACAC
CTCTTTCGGGCCCCGATGCACCGCCGTGCAGTGTCTTCTAGCACGCAGAG
AAGGGTCTCCTCGGCAGAGGCGACAGTGGCAGGGGCGGAGCAGCGGCTGG
ACGAGGTGTGTGTATTTTCTGTACTACTGCTGTACTAGTAGCACTCGGAT
GGGAGCCGTGGCTGCCACTGGTCGATGTAGAGCGCCGTTTCATGACGGAG
CGTGAGCCCCCCGACGGGTTTTTCTCGTCTCTGCCGGCCTGGTTTATCCA
CAGCACAAAGACAAGAAAGGGTTGACACAAGACTCGCGTCGAACCGACGC
ATCATGCTTTCGAACAGCGGTCGCAAATTTCGTAACACGGCAGTTCTTAG
ACCCCCCCCCACTGCTCGACACATAAATTACACAAATACACGCCCGTTGT
TGGGTTGTTGGGCCAGATATATCATTCCCGCGCGTACGTACCAGCAGCCT
CCTTGTTATTCGAGGTGTGGCGTTCGGTGATCAACCCTGGCTCGGTGCTA
CCTTGCGTCGACCGTCGGTCTGCAACAGGCGGCGCGGGTTCCCCTTTTCG
CTTTGTGTGGCGTGTGGCACGCGCACGTCTTGGTCCTGATCGATGCGCGG
CGGGCCTGTGTGGGCGGACTCTGACGAGCTTGTTGGTTCACACATGAGCG
TTATTGTCGGTCTTGAACCCCGCTCTCTCGCTTTCCCTCGGACTTGTGCA
CCGTGCGTGTATTTAATTAGCCCTTCGTGCTCGTTCTGCTGTGCCCCCGT
TGTGCTTGTTTTGAAAGATAAATGGGATAATTCAAAAACGGAACCTAGCC
CCCATTTGAGACGGGGCTCCGTGGGGGTTCAACTGGTATTTTCATATAAA
TGGTGACGTAAGAGAACCTTACAGCCCACATTTGAGACGGGGCTCCGTGG
GGGTTCAACCGGTGTTCCATATAGTGACGTAATATTTGTTTTGCTCTTTT
TGTCACACAGGCGCTGAAAGCTCTGGAAGCCGCCCGATCATCGTTGGATA
CCTGCTCGGAGGACTTGTTGGTTCTGGACGGCAAACGGGAACAGGTGACT
CCGCCGCCGGTTCGGAAAGAGCAGAGCGGCGTTGCCCGCTTGTGGCAATG
AGAACCGCGGGGTAGAAGGAAAGAAGGAAGGAGCAACAGCAGTACTGCTG
TAGAGATAAACCAATCGGAGTTTGAAGGCGGCTTTTCTGCGGCCTTTACA
GCGAGATGCTCCCGTGTTTTTTCCCATCATCGCGCGCACAAGCGTATCTC
CGTAGATATAATAGAAGAAACACTAGGAGGGACCCCGCCGAAGATGTGCC
TCAAACGTCTGGTCTGCGTAGGTGCGTGTGTACCATGCTGCCGGGGGGAT
GAGGAAAGAGTCTGATGAAGTCGTGTAGCAGAATTGCCCGCTCCTGCAAA
GTGATGAAATCGGAAGCCTTTGCTCGCGTCCGTTCGACAGCCAGTCAGTT
AAGTGCTCCTCCACATGGTGTTTTAATGTGTGTTTGCTTCCCAGGTGGTC
AGCGAGGCCGAGGCGAGGGAGGAGGAATGGTCAGAGGCGAAACAGGAGAC
AATGTCCAGC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig7:79325..87634-

>mRNA_L-elsbetiae_contig7.15793.1 ID=mRNA_L-elsbetiae_contig7.15793.1|Name=mRNA_L-elsbetiae_contig7.15793.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1908bp|location=Sequence derived from alignment at L-elsbetiae_contig7:79325..87634- (Laminarionema elsbetiae ELsaHSoW15)
ATGGACAGTGAAGAGCAGCCCGACCACTACGGTGCCCTAGGCATCTCGGA
AGACGCCACTCCCACGGAGGTCAAGATGGACAGTGAAGAGCAGCCCGACC
ACTACGGTGCCCTAGGCATCTCGGAAGACGCCACTCCCACGGAGGTCAAG
GACGCCTTCCGCAAGCTTGCGATGCAGCTGCACCCTGACACGGAGGGTGA
TGCCGGCAACAGAGATACGTTCGAGTCCATCACGGCGGCATACGAGGTCT
TGTCGGACCCGGGGAAACGATCCACCTACGATCAGGACGCCTTCCGCAAG
CTTGCGATGCAGCTGCACCCTGACACGGAGGGTGATGCCGGCAACAGAGA
TACGTTCGAGTCCATCACGGCGGCATACGAGGTCTTGTCGGACCCGGGGA
AACGATCCACCTACGATCAGGGGTTGGCGATGAGGAGCTTCGTGGACAAA
GTCAAGGCAGGGAAGTGGGGCAACGTTATGTCGGCGGTGGCGAATCTCGG
AGCGGCAGCCACGTCGGCAGGGGTATCGGTCGGGGTTGCGGCGGCGGAGC
CCCTCGCGAAGGACCTGGCCCGGAGTTTCGAGGAGTTGACAGGATCTGCG
GAGGGGTTGGCGATGAGGAGCTTCGTGGACAAAGTCAAGGCAGGGAAGTG
GGGCAACGTTATGTCGGCGGTGGCGAATCTCGGAGCGGCAGCCACGTCGG
CAGGGGTATCGGTCGGGGTTGCGGCGGCGGAGCCCCTCGCGAAGGACCTG
GCCCGGAGTTTCGAGGAGTTGACAGGATCTGCGGAGTCCGCGGACCCGAT
CGCGCGGGCACAGCAGGTGGCCAACAGGGCCAAGCTCGAGGCGGAACGGA
AGTCCGCGGACCCGATCGCGCGGGCACAGCAGGTGGCCAACAGGGCCAAG
CTCGAGGCGGAACGGAAGTTCAAGGCGTTCAGGCGGCGGGCGGAAGATTT
TATGGCGGAGGCGGCCCAGCTAGAGGCCTCGCGGATGGCGCGCCTGGAGG
AGATCGCGGAGTGGAACATGGTGCTGGCCGAGAGAAAATCATTCAAGGCG
TTCAGGCGGCGGGCGGAAGATTTTATGGCGGAGGCGGCCCAGCTAGAGGC
CTCGCGGATGGCGCGCCTGGAGGAGATCGCGGAGTGGAACATGGTGCTGG
CCGAGAGAAAATCAGAGCTCGCCTTGGCGGAGAGAAATCTGGAGGAGTCC
AAATCTCAGGCGCTGAAGGCGATCGAGGTGGCAAACGCCCGCAAGGAGAA
GGAGCAGAAGGCCGCGGAGATGGCGCGGCAAGCCAGAGCCGCCCGGGACA
AGTTCATGCAAGGAGCTCGCCTTGGCGGAGAGAAATCTGGAGGAGTCCAA
ATCTCAGGCGCTGAAGGCGATCGAGGTGGCAAACGCCCGCAAGGAGAAGG
AGCAGAAGGCCGCGGAGATGGCGCGGCAAGCCAGAGCCGCCCGGGACAAG
TTCATGCAAGTGTCTTCTAGCACGCAGAGAAGGGTCTCCTCGGCAGAGGC
GACAGTGGCAGGGGCGGAGCAGCGGCTGGACGAGTGTCTTCTAGCACGCA
GAGAAGGGTCTCCTCGGCAGAGGCGACAGTGGCAGGGGCGGAGCAGCGGC
TGGACGAGGCGCTGAAAGCTCTGGAAGCCGCCCGATCATCGTTGGATACC
TGCTCGGAGGACTTGTTGGTTCTGGACGGCAAACGGGAACAGGCGCTGAA
AGCTCTGGAAGCCGCCCGATCATCGTTGGATACCTGCTCGGAGGACTTGT
TGGTTCTGGACGGCAAACGGGAACAGGTGGTCAGCGAGGCCGAGGCGAGG
GAGGAGGAATGGTCAGAGGCGAAACAGGAGACAATGTCCAGCGTGGTCAG
CGAGGCCGAGGCGAGGGAGGAGGAATGGTCAGAGGCGAAACAGGAGACAA
TGTCCAGC
back to top