mRNA_L-elsbetiae_contig7.15786.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7.15786.1
Unique NamemRNA_L-elsbetiae_contig7.15786.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig7.15786.1 vs. uniprot
Match: D8LB17_ECTSI (PINc domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LB17_ECTSI)

HSP 1 Score: 392 bits (1008), Expect = 1.980e-133
Identity = 195/200 (97.50%), Postives = 197/200 (98.50%), Query Frame = 1 
Query:  115 MGKAKKSRAVRVKFAQTKRLLSPKDCRLKGNQEKEETKRKKAKEAETNHVKQVPTSMFFAHNTALGPPYHVLIDTNFVNFSIKNKLDIVKAMMDCLLAKAIPCVTDCVVAELEKLGPKYRVALRLSKDPRFQRLPCSHQGTYADDCLVQRAEQHRCYIVATCDKELKRRIRKIPGVPIMYISNRKFSIERMAEAFGAPPT 714
            MGKAKKSRAVRVKFAQ KRLLSPKDCRLKGNQEKEE KRKKAKEAETNHVKQVPT+MFFAHNTALGPPYHVLIDTNF+NFSIKNKLDIVKAMMDCLLAKAIPCVTDCVVAELEKLGPKYRVALRLSKDPRFQRLPCSH GTYADDCLVQRAEQHRCYIVATCDKELKRRIRKIPGVPIMYISNRKFSIERMAEAFGAPPT
Sbjct:    1 MGKAKKSRAVRVKFAQAKRLLSPKDCRLKGNQEKEEAKRKKAKEAETNHVKQVPTAMFFAHNTALGPPYHVLIDTNFINFSIKNKLDIVKAMMDCLLAKAIPCVTDCVVAELEKLGPKYRVALRLSKDPRFQRLPCSHTGTYADDCLVQRAEQHRCYIVATCDKELKRRIRKIPGVPIMYISNRKFSIERMAEAFGAPPT 200
[Close]
BLAST of mRNA_L-elsbetiae_contig7.15786.1 vs. uniprot
Match: A0A836CF02_9STRA (Fcf1-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CF02_9STRA)

HSP 1 Score: 328 bits (841), Expect = 3.760e-108
Identity = 158/200 (79.00%), Postives = 181/200 (90.50%), Query Frame = 1 
Query:  115 MGKAKKSRAVRVKFAQTKRLLSPKDCRLKGNQEKEETKRKKAKEAETNHVKQVPTSMFFAHNTALGPPYHVLIDTNFVNFSIKNKLDIVKAMMDCLLAKAIPCVTDCVVAELEKLGPKYRVALRLSKDPRFQRLPCSHQGTYADDCLVQRAEQHRCYIVATCDKELKRRIRKIPGVPIMYISNRKFSIERMAEAFGAPPT 714
            MG+AKK RAV+VKFAQ+KRL+SPKD RLK   +K E K  KAKE ET  V Q P++MFF +NTALGPPYHV++DTNF+NFSIKNKLD+VK+MMDCLLAKA PC+TDCV+AELEKLGPKYR+ALRL+KD RFQRLPCSH+GTYADDC++QRAEQHRCYIVATCDKELKRRIRKI GVPIMYISNRK++IERM EAFGAPP+
Sbjct:    1 MGRAKKQRAVKVKFAQSKRLISPKDPRLKEVAKKAEEKAAKAKEKETRQVTQTPSAMFFKYNTALGPPYHVIVDTNFINFSIKNKLDMVKSMMDCLLAKATPCITDCVIAELEKLGPKYRIALRLAKDERFQRLPCSHKGTYADDCILQRAEQHRCYIVATCDKELKRRIRKIAGVPIMYISNRKYTIERMPEAFGAPPS 200
[Close]
BLAST of mRNA_L-elsbetiae_contig7.15786.1 vs. uniprot
Match: A0A397JSP6_9GLOM (PINc domain-containing protein n=2 Tax=Glomeromycetes TaxID=214506 RepID=A0A397JSP6_9GLOM)

HSP 1 Score: 299 bits (765), Expect = 2.060e-96
Identity = 139/198 (70.20%), Postives = 178/198 (89.90%), Query Frame = 1 
Query:  115 MGKAKKSRAVRVKFAQTKRLLSPKDCRLKGNQEKEETKRKKAKEAETNHVKQVPTSMFFAHNTALGPPYHVLIDTNFVNFSIKNKLDIVKAMMDCLLAKAIPCVTDCVVAELEKLGPKYRVALRLSKDPRFQRLPCSHQGTYADDCLVQRAEQHRCYIVATCDKELKRRIRKIPGVPIMYISNRKFSIERMAEAFGAP 708
            MGKAK++R    KFA+ KRLL+PKD RLK  QEK++TK ++ +++E  +V QV +S+FF +NTALGPPYHVL+DTNF+NFSI+NKL++V+AMMDCL AK+IPC+TDCV+AELEKLGPKYR+ALR+++DPRF+RLPC+H+GTYADDCLVQR  QH+CYIVATCD++LKRRIRKIPG+PIMYIS RK++IER+ EA+GAP
Sbjct:   24 MGKAKRTR----KFAEAKRLLNPKDSRLKSVQEKQKTKEEQKRKSEVRNVPQVASSLFFRYNTALGPPYHVLVDTNFINFSIQNKLELVQAMMDCLYAKSIPCITDCVMAELEKLGPKYRIALRIARDPRFERLPCTHKGTYADDCLVQRVMQHKCYIVATCDRDLKRRIRKIPGIPIMYISKRKYTIERLPEAYGAP 217
[Close]
BLAST of mRNA_L-elsbetiae_contig7.15786.1 vs. uniprot
Match: A0A812Y1D1_SYMMI (FCF1 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812Y1D1_SYMMI)

HSP 1 Score: 290 bits (743), Expect = 2.140e-93
Identity = 140/203 (68.97%), Postives = 170/203 (83.74%), Query Frame = 1 
Query:  115 MGKAKKSRAVRVKFAQTKRLLSPKDCRLKGNQEKEETKRKKAKEAE---TNHVKQVPTSMFFAHNTALGPPYHVLIDTNFVNFSIKNKLDIVKAMMDCLLAKAIPCVTDCVVAELEKLGPKYRVALRLSKDPRFQRLPCSHQGTYADDCLVQRAEQHRCYIVATCDKELKRRIRKIPGVPIMYISNRKFSIERMAEAFGAPPT 714
            M K KK+R + VK     +++S KD R+K NQEK+    +KA +A+   + HV Q PT++FF HNT LGPPYHVL+DTNF+NF+IKNKL+I K+MMDCLLAK IPC+TDCV+AELEKLG KYR+ALRL+KDPRF+RLPCSH GTYADDCL+ R +QHRCYIVATCDK+LKRRIRK+PGVPIMYI++RKFS+ERM EAFGAP T
Sbjct:    1 MTKQKKTRKIAVK-----KIISGKDPRIKANQEKQAADAQKALKAQKEASRHVTQAPTALFFTHNTQLGPPYHVLVDTNFINFAIKNKLEIYKSMMDCLLAKCIPCITDCVMAELEKLGTKYRLALRLAKDPRFERLPCSHPGTYADDCLLHRCQQHRCYIVATCDKDLKRRIRKVPGVPIMYINSRKFSVERMPEAFGAPKT 198
[Close]
BLAST of mRNA_L-elsbetiae_contig7.15786.1 vs. uniprot
Match: A0A1Y1ZF27_9FUNG (Fcf1-domain-containing protein n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1ZF27_9FUNG)

HSP 1 Score: 287 bits (735), Expect = 3.210e-92
Identity = 134/198 (67.68%), Postives = 171/198 (86.36%), Query Frame = 1 
Query:  115 MGKAKKSRAVRVKFAQTKRLLSPKDCRLKGNQEKEETKRKKAKEAETNHVKQVPTSMFFAHNTALGPPYHVLIDTNFVNFSIKNKLDIVKAMMDCLLAKAIPCVTDCVVAELEKLGPKYRVALRLSKDPRFQRLPCSHQGTYADDCLVQRAEQHRCYIVATCDKELKRRIRKIPGVPIMYISNRKFSIERMAEAFGAP 708
            MGKAKK+R    +F   KR+L+PKD RLK NQEK + K ++ +++   H+ QV +S+FF +NTALGPPYHVL+DTNF+NFSI+NKL++VK+MMDCL AK IPC+TDCV+AELEKLGPKYRVALR+++DPRF+RLPC+H+GTYADDCLV R  QH+CYIVATCD++LKRRIRKIPG+PIMYI+  K++IER+ EA+GAP
Sbjct:    1 MGKAKKTR----QFGLVKRMLNPKDARLKENQEKLKKKEEEKEKSLVTHIPQVASSLFFRYNTALGPPYHVLVDTNFINFSIQNKLELVKSMMDCLYAKCIPCITDCVMAELEKLGPKYRVALRVARDPRFERLPCAHKGTYADDCLVNRVMQHKCYIVATCDRDLKRRIRKIPGIPIMYIAQHKYTIERLPEAYGAP 194
[Close]
BLAST of mRNA_L-elsbetiae_contig7.15786.1 vs. uniprot
Match: A0A397WAQ8_9GLOM (Fcf1-domain-containing protein n=2 Tax=Gigaspora TaxID=4873 RepID=A0A397WAQ8_9GLOM)

HSP 1 Score: 286 bits (732), Expect = 8.770e-92
Identity = 134/196 (68.37%), Postives = 170/196 (86.73%), Query Frame = 1 
Query:  115 MGKAKKSRAVRVKFAQTKRLLSPKDCRLKGNQEKEETKRKKAKEAETNHVKQVPTSMFFAHNTALGPPYHVLIDTNFVNFSIKNKLDIVKAMMDCLLAKAIPCVTDCVVAELEKLGPKYRVALRLSKDPRFQRLPCSHQGTYADDCLVQRAEQHRCYIVATCDKELKRRIRKIPGVPIMYISNRKFSIERMAEAFG 702
            MGKAKK+R    +FA+ KRLL+PKD RLK  QEK++ K ++ ++    +V QV +S+FF HN ALGPPYH+L+DTNF+NFSI+NKL++V+AMMDCL AK IPC+TDCV+AELEKLGPKYR+ALR+++DPRF+RLPCSH+GTYADDCLV+R  QH+CYIVATCDK+LKRRIRKIPG+PIMYIS RK++IER+ E +G
Sbjct:    1 MGKAKKTR----RFAEVKRLLNPKDSRLKSVQEKQKKKNEEKEKETIRNVPQVASSLFFRHNAALGPPYHILVDTNFINFSIQNKLELVQAMMDCLYAKCIPCITDCVMAELEKLGPKYRIALRVARDPRFERLPCSHKGTYADDCLVKRVMQHKCYIVATCDKDLKRRIRKIPGIPIMYISKRKYTIERLPENYG 192
[Close]
BLAST of mRNA_L-elsbetiae_contig7.15786.1 vs. uniprot
Match: U9SSR2_RHIID (Fcf1-domain-containing protein n=8 Tax=Eukaryota TaxID=2759 RepID=U9SSR2_RHIID)

HSP 1 Score: 283 bits (725), Expect = 9.930e-91
Identity = 131/198 (66.16%), Postives = 171/198 (86.36%), Query Frame = 1 
Query:  115 MGKAKKSRAVRVKFAQTKRLLSPKDCRLKGNQEKEETKRKKAKEAETNHVKQVPTSMFFAHNTALGPPYHVLIDTNFVNFSIKNKLDIVKAMMDCLLAKAIPCVTDCVVAELEKLGPKYRVALRLSKDPRFQRLPCSHQGTYADDCLVQRAEQHRCYIVATCDKELKRRIRKIPGVPIMYISNRKFSIERMAEAFGAP 708
            MGKAKK+R    KFA+ KRL++P D RLK  QEK++ ++++  +    +V QV +S+FF +NTALGPPY V++DTNF+NFSI+NKL++V++MMDCL AK IPC+TDCV+AELEKLGPKYR+ALR+++DPRF+RLPC H+GTYADDCLVQR  QH+CYIVATCD++LKRRIRKIPG+PIMYIS R+++IER+ EA+GAP
Sbjct:    1 MGKAKKTR----KFAEVKRLINPADSRLKSIQEKQKKRQEEKTKESVRNVPQVASSLFFRYNTALGPPYRVMVDTNFINFSIQNKLELVRSMMDCLYAKCIPCITDCVMAELEKLGPKYRIALRVARDPRFERLPCMHKGTYADDCLVQRVSQHKCYIVATCDRDLKRRIRKIPGIPIMYISKRRYTIERLPEAYGAP 194
[Close]
BLAST of mRNA_L-elsbetiae_contig7.15786.1 vs. uniprot
Match: A0A4P9XNI8_9FUNG (rRNA-processing protein FCF1 n=1 Tax=Thamnocephalis sphaerospora TaxID=78915 RepID=A0A4P9XNI8_9FUNG)

HSP 1 Score: 283 bits (725), Expect = 9.930e-91
Identity = 131/186 (70.43%), Postives = 166/186 (89.25%), Query Frame = 1 
Query:  151 KFAQTKRLLSPKDCRLKGNQEKEETKRKKAKEAETNHVKQVPTSMFFAHNTALGPPYHVLIDTNFVNFSIKNKLDIVKAMMDCLLAKAIPCVTDCVVAELEKLGPKYRVALRLSKDPRFQRLPCSHQGTYADDCLVQRAEQHRCYIVATCDKELKRRIRKIPGVPIMYISNRKFSIERMAEAFGAP 708
            KFA+ KRLL+PKD RLK NQ K++T+ +K KE   N + Q+ +S+FF +N+ALGPPYHV++DTNF+NFSI+NKL++V+AMMDCL AK  PC+TDCV+AELEKLGPKYRVALR+++DPRF+RLPC+H+GTYADDC+VQR  QH+CYIVATCD++LKRRIRKIPGVPIM+I+ RK++IERM EAFGAP
Sbjct:    9 KFAEVKRLLNPKDTRLKANQAKQKTQDEKEKELVRN-IPQMASSLFFKYNSALGPPYHVIVDTNFINFSIQNKLELVRAMMDCLYAKCTPCITDCVLAELEKLGPKYRVALRVARDPRFERLPCTHKGTYADDCIVQRVMQHKCYIVATCDRDLKRRIRKIPGVPIMFITQRKYTIERMPEAFGAP 193
[Close]
BLAST of mRNA_L-elsbetiae_contig7.15786.1 vs. uniprot
Match: UPI0009E60673 (rRNA-processing protein FCF1 homolog n=2 Tax=Scleractinia TaxID=6125 RepID=UPI0009E60673)

HSP 1 Score: 283 bits (723), Expect = 2.050e-90
Identity = 133/198 (67.17%), Postives = 165/198 (83.33%), Query Frame = 1 
Query:  115 MGKAKKSRAVRVKFAQTKRLLSPKDCRLKGNQEKEETKRKKAKEAETNHVKQVPTSMFFAHNTALGPPYHVLIDTNFVNFSIKNKLDIVKAMMDCLLAKAIPCVTDCVVAELEKLGPKYRVALRLSKDPRFQRLPCSHQGTYADDCLVQRAEQHRCYIVATCDKELKRRIRKIPGVPIMYISNRKFSIERMAEAFGAP 708
            MGKAKK+R    KFA  KR++SPKD R+K NQE         ++ ET HV+Q  +++FF +NT LGPPY++L+DTNF+NFSIKNKLDIVK+MMDCL AK +PC+TDCV+AELEKLG KYRVALR++KDPRF RLPC H+GTYADDC+V R +QH+CYIVATCD++LKRRIRK+PGVPIMYIS  K++IERM +A+GAP
Sbjct:    1 MGKAKKTR----KFAAVKRMISPKDMRIKQNQEXXXXXXXXXEDNETRHVEQSSSALFFQYNTQLGPPYYILVDTNFINFSIKNKLDIVKSMMDCLYAKCVPCITDCVMAELEKLGSKYRVALRMAKDPRFDRLPCMHRGTYADDCIVNRIQQHKCYIVATCDRDLKRRIRKVPGVPIMYISQHKYTIERMPDAYGAP 194
[Close]
BLAST of mRNA_L-elsbetiae_contig7.15786.1 vs. uniprot
Match: W2G0I5_PHYPR (PINc domain-containing protein n=7 Tax=Phytophthora parasitica TaxID=4792 RepID=W2G0I5_PHYPR)

HSP 1 Score: 282 bits (722), Expect = 5.560e-90
Identity = 137/198 (69.19%), Postives = 169/198 (85.35%), Query Frame = 1 
Query:  115 MGKAKKSRAVRVKFAQTKRLLSPKDCRLKGNQEK-EETKRKKAKEAETNHVKQVPTSMFFAHNTALGPPYHVLIDTNFVNFSIKNKLDIVKAMMDCLLAKAIPCVTDCVVAELEKLGPKYRVALRLSKDPRFQRLPCSHQGTYADDCLVQRAEQHRCYIVATCDKELKRRIRKIPGVPIMYISNRKFSIERMAEAFGA 705
            MGKAKK+R    KFA  KR++SP+D R+   ++   + + KK KEAE   + Q+P++MFF +N+ALGPPY+VL+DTNF+NFSIKNKL++V AMMDCLLAK+ PC+TDCV+AELEKLG KYRVALRL+KDPRF+RLPC+H+GTYADDCLVQR +QHRCYIVATCD+ELKRRIRK+PGVPIMYISNRK+ IER+ EA  A
Sbjct:   19 MGKAKKTR----KFAAVKRMISPRDTRINSVRKAVAKVEEKKRKEAEPKQIDQIPSNMFFKYNSALGPPYNVLVDTNFINFSIKNKLEVVSAMMDCLLAKSTPCITDCVMAELEKLGHKYRVALRLAKDPRFERLPCTHKGTYADDCLVQRVQQHRCYIVATCDRELKRRIRKVPGVPIMYISNRKYVIERLPEANAA 212
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7.15786.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LB17_ECTSI1.980e-13397.50PINc domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A836CF02_9STRA3.760e-10879.00Fcf1-domain-containing protein n=1 Tax=Tribonema m... [more]
A0A397JSP6_9GLOM2.060e-9670.20PINc domain-containing protein n=2 Tax=Glomeromyce... [more]
A0A812Y1D1_SYMMI2.140e-9368.97FCF1 protein n=1 Tax=Symbiodinium microadriaticum ... [more]
A0A1Y1ZF27_9FUNG3.210e-9267.68Fcf1-domain-containing protein n=1 Tax=Basidiobolu... [more]
A0A397WAQ8_9GLOM8.770e-9268.37Fcf1-domain-containing protein n=2 Tax=Gigaspora T... [more]
U9SSR2_RHIID9.930e-9166.16Fcf1-domain-containing protein n=8 Tax=Eukaryota T... [more]
A0A4P9XNI8_9FUNG9.930e-9170.43rRNA-processing protein FCF1 n=1 Tax=Thamnocephali... [more]
UPI0009E606732.050e-9067.17rRNA-processing protein FCF1 homolog n=2 Tax=Scler... [more]
W2G0I5_PHYPR5.560e-9069.19PINc domain-containing protein n=7 Tax=Phytophthor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7contigL-elsbetiae_contig7:17395..24490 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score390.2
Seed ortholog evalue5.9e-106
Seed eggNOG ortholog2880.D8LB17
Preferred nameFCF1
KEGG rclassRC00006,RC00868,RC00887
KEGG koko:K14566,ko:K19562
KEGG ReactionR03182,R03231
KEGG Pathwayko00780,ko01100,ko03008,map00780,map01100,map03008
KEGG ModuleM00123
Hectar predicted targeting categoryother localisation
GOsGO:0000447,GO:0000460,GO:0000462,GO:0000466,GO:0000469,GO:0000472,GO:0000478,GO:0000479,GO:0000480,GO:0000966,GO:0000967,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0030490,GO:0030684,GO:0031974,GO:0031981,GO:0032040,GO:0032991,GO:0034470,GO:0034471,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:1901360,GO:1990904
EggNOG free text desc.maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
EggNOG OGsCOG1412@1,KOG3165@2759
EC2.6.1.62,6.3.3.3
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03009
Ec32 ortholog descriptionrRNA-processing protein Fcf1/Utp23
Ec32 orthologEc-27_005600.1
Exons4
Model size1452
Cds size603
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7.15786.1prot_L-elsbetiae_contig7.15786.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7 17509..23755 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816776.149283-UTR-L-elsbetiae_contig7:17394..175081622816776.149283-UTR-L-elsbetiae_contig7:17394..17508Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7 17395..17508 +
1691683804.4135168-UTR-L-elsbetiae_contig7:17394..175081691683804.4135168-UTR-L-elsbetiae_contig7:17394..17508Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7 17395..17508 +
1622816776.229552-UTR-L-elsbetiae_contig7:23755..244901622816776.229552-UTR-L-elsbetiae_contig7:23755..24490Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7 23756..24490 +
1691683804.4768476-UTR-L-elsbetiae_contig7:23755..244901691683804.4768476-UTR-L-elsbetiae_contig7:23755..24490Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7 23756..24490 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816776.1713006-CDS-L-elsbetiae_contig7:17508..176311622816776.1713006-CDS-L-elsbetiae_contig7:17508..17631Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7 17509..17631 +
1691683804.4298558-CDS-L-elsbetiae_contig7:17508..176311691683804.4298558-CDS-L-elsbetiae_contig7:17508..17631Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7 17509..17631 +
1622816776.1853244-CDS-L-elsbetiae_contig7:22161..222871622816776.1853244-CDS-L-elsbetiae_contig7:22161..22287Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7 22162..22287 +
1691683804.446012-CDS-L-elsbetiae_contig7:22161..222871691683804.446012-CDS-L-elsbetiae_contig7:22161..22287Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7 22162..22287 +
1622816776.2003002-CDS-L-elsbetiae_contig7:22937..231351622816776.2003002-CDS-L-elsbetiae_contig7:22937..23135Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7 22938..23135 +
1691683804.4570158-CDS-L-elsbetiae_contig7:22937..231351691683804.4570158-CDS-L-elsbetiae_contig7:22937..23135Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7 22938..23135 +
1622816776.2164147-CDS-L-elsbetiae_contig7:23599..237551622816776.2164147-CDS-L-elsbetiae_contig7:23599..23755Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7 23600..23755 +
1691683804.466589-CDS-L-elsbetiae_contig7:23599..237551691683804.466589-CDS-L-elsbetiae_contig7:23599..23755Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7 23600..23755 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7.15786.1

>prot_L-elsbetiae_contig7.15786.1 ID=prot_L-elsbetiae_contig7.15786.1|Name=mRNA_L-elsbetiae_contig7.15786.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=201bp
MGKAKKSRAVRVKFAQTKRLLSPKDCRLKGNQEKEETKRKKAKEAETNHV
KQVPTSMFFAHNTALGPPYHVLIDTNFVNFSIKNKLDIVKAMMDCLLAKA
IPCVTDCVVAELEKLGPKYRVALRLSKDPRFQRLPCSHQGTYADDCLVQR
AEQHRCYIVATCDKELKRRIRKIPGVPIMYISNRKFSIERMAEAFGAPPT
*
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mRNA from alignment at L-elsbetiae_contig7:17395..24490+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7.15786.1 ID=mRNA_L-elsbetiae_contig7.15786.1|Name=mRNA_L-elsbetiae_contig7.15786.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=7096bp|location=Sequence derived from alignment at L-elsbetiae_contig7:17395..24490+ (Laminarionema elsbetiae ELsaHSoW15)
CGGCAGTCAGGCAGTCACGGCACGACGCTTGTTCAAGCTAAACTGTTACG
TAGCTAGGGGGAGGAGGAATTGGGTGGGAACAAGCGGAATCACTCTGTGG
GAGAGAAAACAGAAATGGGAAAAGCGAAGAAATCACGCGCTGTGCGGGTG
AAATTCGCTCAAACCAAGCGCTTGCTGAGCCCGAAGGACTGCCGCTTGAA
AGGGAACCAGGAGAAGGAGGAGACGAAGAGAAAGAAGGTGGGAGCGCGTT
GCGTGGTAAGCGAAAGCTGGCCCGCAGTTCCTGGGGGCGCAAATGTATTA
TTGTGCCACCGTTCCGTTGTCGGCCAGCTCCTATAATCTTGCTATTGTAC
AGAGTAGATGTTAACTCCAACACACACACCGATAATAAGGCACGTACGGC
CGCTAGGGTCTTCGTGCTGTCCAGGAGCTACTACTCTGTTAACCTTTTGA
GATGTGTCTATCTCTATCGCTATGTCTTCTTTGGGGGGCTCGGCGAGTCG
GCAAAGCAGATAAGAGCTGCATGGATGCAGCAAGGTTTGGCTCTCACCCC
CCCCCGTACATGTCGTACAGCAGCAGCATAGACTACATGTAGTTGCGCCG
CACCTGTATGACCTTGGAAATAGCGGTGGAGAAGTTTCACAGGAGTTTAT
ATTGGGCATTATATGTATCGTATGCGTTATCTCTTTATACACATGGTATC
GTAACAGGCAAGCTAAGACCAGTACATATGTACATAGGATAAGTACCTCC
TTTTTAATTCCGTAGGTTGACACAAGATACCACACACCCCTGGACCGACT
TTAACCCTTTTAGTACTGGAAGCCCGTTTGGCGACGACTTGGTGGCACCT
AACTTTGGTCACTGTTTTATTACTTTGGGGTGCACGGGCGGTCTTGGTAT
CCCGTACAAAGGCCTGGGAGTACCCTGCCGAGTTGTATAGACACTTCACG
TACCGTATCTGGCCTCCTCACAGCTCCACGGCAGTGCTACTGTGGACACA
ACGGAGTTGTTGTCGATCACGCGTGTTGCTGGGGGCTCCGTATAATGAAA
ATTAGTCACAAGGGTCCACGCAGACGGGGATTTTTGCTCTTCAGCCGCAG
CACTCTTTTTTGCTGCCGAACTCACAGCAGAGTCACCACCTTTGCACACG
ACGATACTCCTCACACAGGGCGCGGCTTGCTGTAAAAATTGCAGGAGGCC
TCACGTATGTCATGTTCTGCGTCCGCGTGGAGTTTTTATCCCTTCGTTTT
GCCCTGTATTCGAGAAATGCTGCGTCGTCACGAGTAGAAGAGGCTAGGTT
GCAGCTGCTGCTTGTTTGGCCCAATTTCTTGCCGCCAAAGCGAACTTCAC
GCGCTTGGGGGCCGTCGAAGGAGTTCGCGAAATCACTCGGTACTTCGACA
CAGCAGTGGAGGCATATATTTACACAAAGATGGCAGAGAAGCTTTGAGCA
ATTTTGGATCGCGGGTGCGACGGTCACACCAGCGAACACCGCTTTTTACA
CAAGGACGAGCAGCATGTCACATGAGTCTACCTCCAATTGTGTGTGGAAA
CAATCCTCAAACTGTCTCTCAATTTGACTTTCATCGCCGTGGGGGCCGCC
GAAAACGTGCCCCAAAACATATTTCGACGGTACCAGGCTGTATAGTCATC
TCAACGGATTATTTTGAGGCTGTGAGACCCATGTTTATGGTCAGAAAACG
TTCAAGAAATACCTGGATATGTTGTCAAACGTTTTGGGAGAACATTTGCC
GAAGGAAGATTTTCGAGGCGCTTTTTATGGGAAACAAAATAATATCTTGG
TGTTTCGTGCGAATGCACCCCGATTGCGGCTGGACCTCTGATCTACTGCT
GTCAAACGGGGCGTGGCAGACAAATCATAAATACGCCATGAATACTGAAC
GTAACGAGATCATAAAGGGCTCCCGGCAACCGTAGCATCTCTGTGTGCCG
GTAGCTCGGTCGCCGATCTTCGGCAGAAGCTCACCAGACGCCCGAGAAAA
ATTGTTTCGTGTGTCAAAAAAACACAGAAGCGTGCGTCATCGGTTCAGAA
CCGTAGAACACACCTGTTTGAGAGCACAAGACTACAACCATACCCAGCTC
TCATCCGCTAGAATATGAAATCAAGTTCGGTCTTCTTGGTTGTCACCTCT
ACTCACTGCTTTCATTCGGGTGGGCGTGGGCTGGCAGTGCGCCTTCTCAA
TTGACAGCGAGGCGCATCGCCGTGCGCACAAAGTTGTCAAAAAAACAAAG
TGCGGACCTTTTTTTTCACTTGGTTGTTTCCCCGGCTGAAAAAAACTCCC
GAACACACTCGAGTACACGGCGATGCGCCTCGCTATCGATTGAGAAGTCC
CACGCCCAAGCCACGCCCACCCGAATGAAAGCAGTGAGTGTAGCTGACAT
AGAAAAATACCGAACTGGAATTCATCATCTAGGGGATGAGATCTGGTTAG
TTTTGTGGTCACGTCTCTGCTTTTCTCGCCGTACAGAGATGCGCAGGAGG
TTATCCCCGTACCTTCTACACCCATCCTGTCTGTTTTTATTTTTTCTCGC
ACGCTTGACGAGCGCCCGCCTCATTTCACTTGCCGGCATGCTGAGACAGT
GCCTCTGGGCTTCTTTGGAGCCCTCTATGAGGTTGCCACGTTCAGTATTC
ATCGCGCACGCAGTGGTTGGTTTTGGGAACATTTTCGCAAGGTGCCCGAT
TCGAAAATGTTCCCCAAACATTTGCTTGAGAGAGCAACATTTGGCCCATC
TGGAAATATTTGACAACATTGTGCCAAAGATTTGCTCCCATAAAAAGCGT
GCAAAAAATGTTTTTGGCAAATTGTTCAAAATATGAAGATATTTGACAAC
ATTTTCGGGCCATAAACATGGGTCTGAGGAATTTTGGATCGCCACTATAG
CCGGAGTTGTCGAGGAATAAGTGCCCAGGCCCTATTGTATGGCTAAGCGG
CCAATCAGGGGCGACGCCGTTTCGCACTTCGTGAAGAAAAAATTGAGAAA
AGGTCTGTGCGGAGCCCCCAGCAACCCGAGTGCGATATCTCACAATCACG
AAAAAATCAACGTGTTATTCGTCGATATCTCCAAATCACGAAAAAATCAA
CTTGTCTGCGATTCCACACTCTGTACTTTCCGCGGCGCCCCCAGCGATTT
GAGCCTTTGAGCTGACAGCATGCACACACAGCTTCGCTGTAACTCTAGAG
AACCACCGTATGCTGAGCCTAGAGCGGGTTGCTTCGCTCACCACGCTGCA
TGATGCGTTGTGAGGGCTGCTGCGCGTGCACAGCCCAGGGTTCATCTCAT
GTCTCTGAGACAAAGAACTCTGTATTGTCTGGTACGCCAAAAAAGTTCGA
CTTGGTTTGAGTACTGAAAGTGTCGCCAAACGCTTAGCAGAGTTTGACTG
CTAGTAAGTATAGGAAGTGTCGCCAAATTGGCGTGGGGCCCTGCAGCTGG
TCTTTGCAGGTGTCTTGTGCAGGGACTAAATACTGTCCTTCTCGACCAAT
CAGCGGGCATCTAGAACAGTTCGATACTTTTGGTCGCATAACTTTGGTTC
TCAGGGACCTTCCATGCTAAAAGGGTTAAGAGCTCCGTTACTCCGTAACG
AAGAGTGTGTCAGCACCAAACGACACATTTTCGGACAGCCCTCGACTACA
TGTTCGAAGTCGTATCACCAGTCCTGCTAAGGGATCTTCCTATGCTGAAT
TGGTTCTAGATGGTTTCCCTGTACCCTAAGCCTAACCCCAACCCCAACCC
CAACCCGACTACCCTCGGGGGGCGTGGTAAAGTTCTAGGTCACAAGGCGT
CGGTTAGGTGGTAGGTTGGAGGGCAGGGGTAAGGCTAGGCCGCGGCTGCG
CCGCGGCGGTGCGCGTGCGCGCACATTCCGTGGGACGTTTAGAACCACTG
TGCGGTCTCCAGACCCGAGGCCGCCAGTCTATTTTCTAGATGTTTCAGCA
CAGGAAGATCCCTTCGCAGGATTGGTGATATGCACTGACATATTCCCATG
GCCACCCCATTTCGGCATGGCACTGTTCCTTCCTGCTTGGGAGGAACCGA
GCGGTGAAAATCTGTCCAGGGGGTGTGATATCTTGTGCCACCTACGGTAA
GAGGAATGTGAATGTACCGCTGTAGCGCTTACACCGACCATGTCTCCACC
CGTTTTGAGGCGCCTTTATCCTACCAGAATGAATCACACAAACAATAAAT
CCGCTTGACTCGTGGCGACACAGATCTTACTCGAACGCCTGATCTATTCT
ACCCTCGATCTACATGGTTGACAATCGAACTTGGTTTATTTATATTTACT
CGTCTGTACACAAAGTTCGACCTCGCCGTCGACAAGGGAAAAGGGAAAGG
GACGGCTGAACACTTCTCGCGACAAAAATCTTAGGCAAGCACCGCAGACG
GGGGGAGTGAGGGCCTTGGGGGAAAGGAACCCTTCTGTGTGACCACGGTT
CAGTACTCTGGCAAGATGTCCTCGTGACAGGGAGCCCATCGAGCACTGAA
AATAAATGTGAAGGAAAAAAAAAAACTATGTACTGCTCTAGTCTGGTGCT
CCATGTGTGCATCCTCAACACACAAGAAGAGAGAAACTGGAGGGCGATCC
TGCGTTCCATTTTCTTTTTCTTTTTCTTTTTCTTCCCCAAGTCTTGTTTA
TATACATAGGTATATGTAGATCGTCTAAATTGGTGTACCCACTCGTGGAC
TACTGACTGTCTGTCTTGCCGCTCTGCGTGCGGGTGGTGGCTGGATGGAT
CAATCGACAAAACGCAGGCAAAGGAGGCAGAGACGAACCACGTGAAGCAG
GTCCCGACCTCCATGTTCTTCGCGCACAACACCGCCCTCGGGCCGCCTTA
CCACGTCCTGATCGACACCAACTTCGTCAACTTCTCCATCAAGGTCCGTT
GCTGTCTCCGTTATTTTTATTTTTATTTTTTTGCGGATACCCACGCGTTT
TACCAGCGCGCTTGGACGAGGGTCCGAGCAAATTTAAAAGCAGCGCACCT
TTTCGGTCTCCGGCTTTTGACGGTTTTTGACAGATAAATCAGATAAATCA
AAAACAGAACCTAACATTCGCCCACATACATACATTTGGGACGGTTTTTT
GTTTTTTCTCGGTCGGTCGTGCCGCATCGCATATGGTGTTTTTCGTGCCG
ACGATCGACCCTCCTCCAGGGGACGGAAGGCACCACCCTGCTGCTGTGTT
CGTTCACCCATGTACGTACCCAACTGTCCGGTAATAGTTCTACTGCCGTA
CACCCTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCTCCCTGCCCCTGTTCTCCCTCCCGTCTCCCCCCCTTCC
NNNNNNNNNNGGCCCCCCCCGCCCGCTGGTTTCGTTCCCCCCCTTCCGCC
CCCACCCGCCCGGTATTATTTTTCTCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCGCCCCGCCCTGTTCATCTTGGATGCTGCTCTGTGTTTCGGT
CATGTCTACATGTATATACGATAAATGCACGCTCGACCGTCAGAACAAGC
TCGACATCGTCAAGGCCATGATGGACTGCCTCCTGGCGAAGGCCATCCCT
TGCGTGACCGACTGCGTGGTGGCGGAGCTCGAGAAGCTGGGGCCCAAGTA
CCGCGTGGCGCTGCGGCTCTCTAAAGACCCGAGGTTCCAGAGACTGCCCT
GCTCCCACCAGGGGACCTACGCCGACGACTGCTTGGTGCAGGTGGGTGGG
CTCTGGAGATGATTCACGTCTTGTGTGTGTGTGTGTGTGTGTCTTCTCTA
CAACCGTGCCCTGTAGCGCTGTTTCATAGTAGTGCTTTTCGGGGTAATTC
GTGTGTGCCGACTCTGTGCATACGCGTGTTTTTTTTTTCTTTTTTTTCGG
TCAAGCGCGCCCAGCCCACATCTGCCTTTTCGTTGTTGCCGGCGGCAAGT
TTTCGGTTGAAAATGATTCCCGATTAGCTTTCTCGAACTGCGAGCTATAT
AGCCGGCACAGCGCACAGCGTAGCGTGGCGCTCTCGAGACGAGGAGGTAA
CACCGCGCCTAAGCTTAGATAGCTGGGCAAGCAATGGAGTGTAATGGCTT
CTCACACAAGGCGAATTTACCCCCCCCCCCAAAAAAAAAACGTCGTCCCC
CCTTCCGCTGCCGCCCACCTCCGTTGCGTGCCCCCGAACGCTATTATAAC
GACAGCGAGCTGAGCAGCATCGGTGCTACATCGTTGCCACGTGCGACAAG
GAGCTCAAGCGGCGGATACGCAAGATCCCCGGCGTGCCGATCATGTACAT
CTCCAACCGAAAGTTCTCCATCGAAAGGATGGCGGAGGCTTTCGGGGCGC
CGCCAACGTAGTCGGCCGAGTGTGTTTTCCTTTGCCTTTGGTCCGACATT
GCCGCGGCGCCCCCCCCCCCCTCCCCCCCTGCACGCCAGCATCTACTAAA
TGCGGTAGGCCGACAAAGGCGGAGAGATGTGGGCAGGCGCTACGGATTTC
GTTTGCAAATTTGGGGGTTCCGTGGCTGTATCACCGTCGACAGGATGCTG
GTTTTAGTTTCAGCCCCCGTTATATAAGTGGATTAGCTGCTGTCGTGTAT
TGAAACGACTTTGCGAACACCACGAAATAGTGTGCAAGCTGTGGCATCCT
GGGGGGCTCCGCCGATCATTTCGGCCGGGACAGCGGTGGCTGCTGACCTA
CCCGCAGCGAAGAGATCACGACCGACGGCGGCGGTAGGGAGGGGAGCTCC
AAGAGTCTCGGTAACGGGTTTCTTACTGAGCTGTAAGGCCTTCGGTTCGG
CCTTTCGTCTTTCTTTTTTCCGGAAGTGGTGTCGCACCTTCCGTACGCTA
TCCCAAAATTTGCCTCGGGTGCTTCCCATTTCGGGGAGCGCGGGAAGTGG
AAGCTCGTGGCTGCCTGCAGGGGGGCACGGGTGCGGAGAGGGTAGGGTAG
GCTTGGCCTGTGAGGTAAGTAAGGACAATGGGTTCCTCAACGTTGCTCGC
GGGCTAGAGAGCGCCGAAGGCGGAGGGGGTTTCGAACCTAACGTTGTCGT
GCAGATTATGTGTATTAATTAGTAAGTAGGACGCGTATTTTTTCCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7:17395..24490+

>mRNA_L-elsbetiae_contig7.15786.1 ID=mRNA_L-elsbetiae_contig7.15786.1|Name=mRNA_L-elsbetiae_contig7.15786.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1206bp|location=Sequence derived from alignment at L-elsbetiae_contig7:17395..24490+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGAAAAGCGAAGAAATCACGCGCTGTGCGGGTGAAATTCGCTCAAAC
CAAGCGCTTGCTGAGCCCGAAGGACTGCCGCTTGAAAGGGAACCAGGAGA
AGGAGGAGACGAAGAGAAAGAAGATGGGAAAAGCGAAGAAATCACGCGCT
GTGCGGGTGAAATTCGCTCAAACCAAGCGCTTGCTGAGCCCGAAGGACTG
CCGCTTGAAAGGGAACCAGGAGAAGGAGGAGACGAAGAGAAAGAAGGCAA
AGGAGGCAGAGACGAACCACGTGAAGCAGGTCCCGACCTCCATGTTCTTC
GCGCACAACACCGCCCTCGGGCCGCCTTACCACGTCCTGATCGACACCAA
CTTCGTCAACTTCTCCATCAAGGCAAAGGAGGCAGAGACGAACCACGTGA
AGCAGGTCCCGACCTCCATGTTCTTCGCGCACAACACCGCCCTCGGGCCG
CCTTACCACGTCCTGATCGACACCAACTTCGTCAACTTCTCCATCAAGAA
CAAGCTCGACATCGTCAAGGCCATGATGGACTGCCTCCTGGCGAAGGCCA
TCCCTTGCGTGACCGACTGCGTGGTGGCGGAGCTCGAGAAGCTGGGGCCC
AAGTACCGCGTGGCGCTGCGGCTCTCTAAAGACCCGAGGTTCCAGAGACT
GCCCTGCTCCCACCAGGGGACCTACGCCGACGACTGCTTGGTGCAGAACA
AGCTCGACATCGTCAAGGCCATGATGGACTGCCTCCTGGCGAAGGCCATC
CCTTGCGTGACCGACTGCGTGGTGGCGGAGCTCGAGAAGCTGGGGCCCAA
GTACCGCGTGGCGCTGCGGCTCTCTAAAGACCCGAGGTTCCAGAGACTGC
CCTGCTCCCACCAGGGGACCTACGCCGACGACTGCTTGGTGCAGCGAGCT
GAGCAGCATCGGTGCTACATCGTTGCCACGTGCGACAAGGAGCTCAAGCG
GCGGATACGCAAGATCCCCGGCGTGCCGATCATGTACATCTCCAACCGAA
AGTTCTCCATCGAAAGGATGGCGGAGGCTTTCGGGGCGCCGCCAACGTAG
CGAGCTGAGCAGCATCGGTGCTACATCGTTGCCACGTGCGACAAGGAGCT
CAAGCGGCGGATACGCAAGATCCCCGGCGTGCCGATCATGTACATCTCCA
ACCGAAAGTTCTCCATCGAAAGGATGGCGGAGGCTTTCGGGGCGCCGCCA
ACGTAG
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