mRNA_L-elsbetiae_contig7.15784.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7.15784.1
Unique NamemRNA_L-elsbetiae_contig7.15784.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig7.15784.1 vs. uniprot
Match: D8LB16_ECTSI (Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB16_ECTSI)

HSP 1 Score: 80.1 bits (196), Expect = 4.420e-16
Identity = 36/42 (85.71%), Postives = 39/42 (92.86%), Query Frame = 1
Query:    1 TRRGDYRPLHLACYAGSSDMVGLLVRRGADLSAGDKWGASPL 126
            TRRGDYR +HLACYAGS+DMV LL RRGAD+SAGDKWGASPL
Sbjct:  218 TRRGDYRAIHLACYAGSADMVSLLARRGADVSAGDKWGASPL 259          
BLAST of mRNA_L-elsbetiae_contig7.15784.1 vs. uniprot
Match: A0A6H5L4F4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4F4_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 4.420e-16
Identity = 36/42 (85.71%), Postives = 39/42 (92.86%), Query Frame = 1
Query:    1 TRRGDYRPLHLACYAGSSDMVGLLVRRGADLSAGDKWGASPL 126
            TRRGDYR +HLACYAGS+DMV LL RRGAD+SAGDKWGASPL
Sbjct:  233 TRRGDYRAIHLACYAGSADMVNLLARRGADVSAGDKWGASPL 274          
BLAST of mRNA_L-elsbetiae_contig7.15784.1 vs. uniprot
Match: UPI00188620FC (myotrophin n=1 Tax=Syngnathus acus TaxID=161584 RepID=UPI00188620FC)

HSP 1 Score: 53.5 bits (127), Expect = 1.560e-7
Identity = 26/58 (44.83%), Postives = 37/58 (63.79%), Query Frame = 1
Query:   10 GDYRPLHLACYAGSSDMVGLLVRRGADLSAGDKWGASPLHRACLEGHLAAARAVLDAG 183
            G  +PLHLAC  G + +V  L+ + AD++A DK   +PL  ACLEGH A  + +L+ G
Sbjct:   35 GGRKPLHLACDFGQTSIVEFLLSKKADINATDKHDLTPLMYACLEGHAACVKVLLEKG 92          
BLAST of mRNA_L-elsbetiae_contig7.15784.1 vs. uniprot
Match: UPI001961A554 (ankyrin repeat domain-containing protein n=1 Tax=Tenggerimyces flavus TaxID=1708749 RepID=UPI001961A554)

HSP 1 Score: 51.2 bits (121), Expect = 1.630e-6
Identity = 26/52 (50.00%), Postives = 34/52 (65.38%), Query Frame = 1
Query:   25 LHLACYAGSSDMVGLLVRRGADLSAGDKWGASPLHRACLEGHLAAARAVLDA 180
            LH A  AG +D +G  V  G D++A D    +PLH AC +GH+ AARA+LDA
Sbjct:   15 LHQAAVAGDADAIGRFVAEGEDVAAVDDSLLTPLHMACQQGHVEAARALLDA 66          
BLAST of mRNA_L-elsbetiae_contig7.15784.1 vs. uniprot
Match: A0A1G2Z2E0_9BACT (Methyltranfer_dom domain-containing protein (Fragment) n=1 Tax=Planctomycetes bacterium RBG_13_60_9 TaxID=1801963 RepID=A0A1G2Z2E0_9BACT)

HSP 1 Score: 50.8 bits (120), Expect = 9.220e-6
Identity = 31/62 (50.00%), Postives = 39/62 (62.90%), Query Frame = 1
Query:    1 TRRGDYRPLHLACYAGSSDMVGLLVRRGADLSA-GDKWGASPLHRACLEGHLAAARAVLDAG 183
            T  G    LH A   G SD+V LLV RGA+++A  DK+GA+PLH A  +GH A A  +L AG
Sbjct:  316 TSAGRGTVLHGAALKGQSDLVQLLVGRGAEVNAKDDKYGATPLHLAAYKGHKAVAEILLLAG 377          
BLAST of mRNA_L-elsbetiae_contig7.15784.1 vs. uniprot
Match: A0A5J4Z4Q5_PORPP (Putative serine/threonine-protein kinase n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z4Q5_PORPP)

HSP 1 Score: 50.8 bits (120), Expect = 9.270e-6
Identity = 25/47 (53.19%), Postives = 34/47 (72.34%), Query Frame = 1
Query:   13 DYR-PLHLACYAGSSDMVGLLVRRGADLSAGDKWGASPLHRACLEGH 150
            D+R PLH+A   G +D+V LL+ RGAD+SA D+WG++PL  A   GH
Sbjct: 1196 DHRTPLHVAASEGRADVVKLLIERGADISAVDRWGSTPLQDAQRVGH 1242          
BLAST of mRNA_L-elsbetiae_contig7.15784.1 vs. uniprot
Match: A0A7S0J643_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0J643_9EUKA)

HSP 1 Score: 48.5 bits (114), Expect = 1.670e-5
Identity = 23/58 (39.66%), Postives = 35/58 (60.34%), Query Frame = 1
Query:   10 GDYRPLHLACYAGSSDMVGLLVRRGADLSAGDKWGASPLHRACLEGHLAAARAVLDAG 183
            G +  +H +    + + +  L+  GAD++A D  G SPLH AC+ GH A A+ +LDAG
Sbjct:   28 GGWTAMHCSAAVANGEALQELIAAGADVNAADDDGLSPLHLACVGGHAAVAKELLDAG 85          
BLAST of mRNA_L-elsbetiae_contig7.15784.1 vs. uniprot
Match: UPI0018AC28AE (DUF4259 domain-containing protein n=1 Tax=Aliikangiella sp. G2MR2-5 TaxID=2788943 RepID=UPI0018AC28AE)

HSP 1 Score: 49.3 bits (116), Expect = 3.170e-5
Identity = 22/54 (40.74%), Postives = 38/54 (70.37%), Query Frame = 1
Query:   22 PLHLACYAGSSDMVGLLVRRGADLSAGDKWGASPLHRACLEGHLAAARAVLDAG 183
            PL+LA  AG S+++ +L+ +GAD++A  ++G   L  AC  G++AA + +LD+G
Sbjct:  193 PLNLAAKAGVSEIISMLIEKGADVNARSRYGYKALPLACAHGNIAATKVLLDSG 246          
BLAST of mRNA_L-elsbetiae_contig7.15784.1 vs. uniprot
Match: UPI00201F19BD (ankyrin repeat domain-containing protein 50-like n=1 Tax=Haliotis rufescens TaxID=6454 RepID=UPI00201F19BD)

HSP 1 Score: 48.5 bits (114), Expect = 5.960e-5
Identity = 26/57 (45.61%), Postives = 34/57 (59.65%), Query Frame = 1
Query:    7 RGDYRPLHLACYAGSSDMVGLLVRRGADLSAGDKWGASPLHRACLEGHLAAARAVLD 177
            RG   P+  A + G +D+V LLV +GAD+S  DK G + LH AC+ GHL     VL 
Sbjct:  331 RGSMTPVMRAAWIGHTDVVELLVSKGADVSLVDKDGDNTLHFACIGGHLETVEFVLS 387          
BLAST of mRNA_L-elsbetiae_contig7.15784.1 vs. uniprot
Match: A0A7R9VVM1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VVM1_9STRA)

HSP 1 Score: 48.1 bits (113), Expect = 7.810e-5
Identity = 27/60 (45.00%), Postives = 39/60 (65.00%), Query Frame = 1
Query:   16 YRPLHLACYA----GSSDMVGLLVRRGADLSAGDKWGASPLHRACLEGHLAAARAVLDAG 183
            Y PLH AC +    GS +++ LL++RGAD +A +KW  +PL  A   GH AA  A+L++G
Sbjct:  217 YTPLHTACSSSTSEGSLEVLKLLLKRGADGNACNKWRETPLLIAANNGHRAAVEALLESG 276          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7.15784.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D8LB16_ECTSI4.420e-1685.71Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5L4F4_9PHAE4.420e-1685.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI00188620FC1.560e-744.83myotrophin n=1 Tax=Syngnathus acus TaxID=161584 Re... [more]
UPI001961A5541.630e-650.00ankyrin repeat domain-containing protein n=1 Tax=T... [more]
A0A1G2Z2E0_9BACT9.220e-650.00Methyltranfer_dom domain-containing protein (Fragm... [more]
A0A5J4Z4Q5_PORPP9.270e-653.19Putative serine/threonine-protein kinase n=1 Tax=P... [more]
A0A7S0J643_9EUKA1.670e-539.66Hypothetical protein (Fragment) n=1 Tax=Calcidiscu... [more]
UPI0018AC28AE3.170e-540.74DUF4259 domain-containing protein n=1 Tax=Aliikang... [more]
UPI00201F19BD5.960e-545.61ankyrin repeat domain-containing protein 50-like n... [more]
A0A7R9VVM1_9STRA7.810e-545.00Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7contigL-elsbetiae_contig7:14213..14398 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score81.3
Seed ortholog evalue1.8e-13
Seed eggNOG ortholog2880.D8LB16
Hectar predicted targeting categoryother localisation
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionAnkyrin repeat
Ec32 orthologEc-27_005610.1
Exons1
Model size186
Cds size186
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816776.1093383-CDS-L-elsbetiae_contig7:14212..143981622816776.1093383-CDS-L-elsbetiae_contig7:14212..14398Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7 14213..14398 -
1691683804.3936167-CDS-L-elsbetiae_contig7:14212..143981691683804.3936167-CDS-L-elsbetiae_contig7:14212..14398Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7 14213..14398 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7.15784.1prot_L-elsbetiae_contig7.15784.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7 14213..14398 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7.15784.1

>prot_L-elsbetiae_contig7.15784.1 ID=prot_L-elsbetiae_contig7.15784.1|Name=mRNA_L-elsbetiae_contig7.15784.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=62bp
TRRGDYRPLHLACYAGSSDMVGLLVRRGADLSAGDKWGASPLHRACLEGH
LAAARAVLDAG*
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mRNA from alignment at L-elsbetiae_contig7:14213..14398-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7.15784.1 ID=mRNA_L-elsbetiae_contig7.15784.1|Name=mRNA_L-elsbetiae_contig7.15784.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=186bp|location=Sequence derived from alignment at L-elsbetiae_contig7:14213..14398- (Laminarionema elsbetiae ELsaHSoW15)
ACCCGGCGGGGCGACTACCGGCCCCTCCACCTCGCGTGCTACGCCGGATC GTCCGACATGGTGGGACTGTTGGTGCGGAGGGGTGCCGACCTGTCGGCGG GCGACAAGTGGGGGGCGTCTCCTTTGCACCGGGCGTGCCTGGAGGGTCAT CTGGCGGCCGCGCGTGCCGTTCTCGACGCAGGGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7:14213..14398-

>mRNA_L-elsbetiae_contig7.15784.1 ID=mRNA_L-elsbetiae_contig7.15784.1|Name=mRNA_L-elsbetiae_contig7.15784.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=372bp|location=Sequence derived from alignment at L-elsbetiae_contig7:14213..14398- (Laminarionema elsbetiae ELsaHSoW15)
ACCCGGCGGGGCGACTACCGGCCCCTCCACCTCGCGTGCTACGCCGGATC
GTCCGACATGGTGGGACTGTTGGTGCGGAGGGGTGCCGACCTGTCGGCGG
GCGACAAGTGGGGGGCGTCTCCTTTGCACCGGGCGTGCCTGGAGGGTCAT
CTGGCGGCCGCGCGTGCCGTTCTCGACGCAGGGTGAACCCGGCGGGGCGA
CTACCGGCCCCTCCACCTCGCGTGCTACGCCGGATCGTCCGACATGGTGG
GACTGTTGGTGCGGAGGGGTGCCGACCTGTCGGCGGGCGACAAGTGGGGG
GCGTCTCCTTTGCACCGGGCGTGCCTGGAGGGTCATCTGGCGGCCGCGCG
TGCCGTTCTCGACGCAGGGTGA
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