mRNA_L-elsbetiae_contig7.15783.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7.15783.1
Unique NamemRNA_L-elsbetiae_contig7.15783.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7.15783.1 vs. uniprot
Match: A0A6H5JIZ3_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIZ3_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 8.840e-24
Identity = 55/102 (53.92%), Postives = 70/102 (68.63%), Query Frame = 3 
Query:    6 VLTAVRLLVMYYPSKRAKYGRYTNERRLVRALGFSYILMEICGWSAAAALGKQRAASVVASLGPLLASLTIISATFFGWQLKGVHDLSNMGRDIRLVVGFLL 311
            +LTA+RL VMYYPS RAKYGR T E+     L  +Y+L+E+  W AAA  G +R A V+ +L PL A +T+++    G QLK +HDLSNMGRDIRLV   LL
Sbjct:   90 ILTALRLFVMYYPSTRAKYGRVTREKPWACGLAATYLLVEMVVWLAAAMQGTKRVAVVMTNLAPLSAFVTLMAVVCLGRQLKRIHDLSNMGRDIRLVGIILL 191
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BLAST of mRNA_L-elsbetiae_contig7.15783.1 vs. uniprot
Match: D8LTR6_ECTSI (Developmental regulator FlbA n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTR6_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 1.150e-17
Identity = 50/103 (48.54%), Postives = 66/103 (64.08%), Query Frame = 3 
Query:    3 LVLTAVRLLVMYYPSKRAKYGRYTNERRLVRALGFSYILMEICGWSAAAALGKQRAASVVASLGPLLASLTIISATFFGWQLKGVHDLSNMGRDIRLVVGFLL 311
            LV++AVRLLVM++P  RAK+GR+T E+ LV  L  +YILME   WS  AA+G  R   V+A+L     S T+++    G +L  V DL +M  DIR VVG LL
Sbjct:   98 LVMSAVRLLVMFFPKLRAKWGRFTREKDLVYGLVCAYILMEGALWSGVAAVGVSRTGGVLATLELFSGSTTVVAGVLVGGRLNKVDDLLHMSTDIR-VVGMLL 199
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BLAST of mRNA_L-elsbetiae_contig7.15783.1 vs. uniprot
Match: A0A6H5KX00_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX00_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 1.580e-17
Identity = 48/103 (46.60%), Postives = 64/103 (62.14%), Query Frame = 3 
Query:    3 LVLTAVRLLVMYYPSKRAKYGRYTNERRLVRALGFSYILMEICGWSAAAALGKQRAASVVASLGPLLASLTIISATFFGWQLKGVHDLSNMGRDIRLVVGFLL 311
            LV++AVRLLVM++P  RAK+GR+T ER LV  L  +YILME   WS  AA+G  R   V+ +L     S T+++    G +L  V DL +M  DIR+V   LL
Sbjct:   98 LVMSAVRLLVMFFPKLRAKWGRFTRERDLVYGLVCAYILMEGALWSGVAAVGLSRTVGVLVTLELFTGSTTVVAGVLLGGRLNKVDDLLHMSTDIRVVGTILL 200
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BLAST of mRNA_L-elsbetiae_contig7.15783.1 vs. uniprot
Match: A0A6H5KVN6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVN6_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 4.200e-17
Identity = 44/92 (47.83%), Postives = 58/92 (63.04%), Query Frame = 3 
Query:    6 VLTAVRLLVMYYPSKRAKYGRYTNERRLVRALGFSYILMEICGWSAAAALGKQRAASVVASLGPLLASLTIISATFFGWQLKGVHDLSNMGR 281
            +LTA+RL VMYYP+ RAKYGR T E+     L  +Y+L E     AAA  G +R A+V+ +L P+   +TI +    G QLK +HDL NMGR
Sbjct:   79 ILTALRLFVMYYPNTRAKYGRVTREKPWACGLAATYLLGETVVRLAAAVQGTKRVATVMTNLDPVSVFITITAVVCLGRQLKRIHDLRNMGR 170
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BLAST of mRNA_L-elsbetiae_contig7.15783.1 vs. uniprot
Match: D7G0P6_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0P6_ECTSI)

HSP 1 Score: 61.2 bits (147), Expect = 1.940e-8
Identity = 31/55 (56.36%), Postives = 37/55 (67.27%), Query Frame = 3 
Query:    3 LVLTAVRLLVMYYPSKRAKYGRYTNERRLVRALGFSYILMEICGWSAAAALGKQR 167
            LVLTA+RL VMYYPS RAKYGR T E+     L  +Y+L+E   W A AA G +R
Sbjct:   89 LVLTALRLFVMYYPSTRAKYGRVTREKPWACGLAATYLLVETVVWLAGAAQGTER 143
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BLAST of mRNA_L-elsbetiae_contig7.15783.1 vs. uniprot
Match: A0A6H5J8W8_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8W8_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 2.510e-8
Identity = 30/55 (54.55%), Postives = 38/55 (69.09%), Query Frame = 3 
Query:    3 LVLTAVRLLVMYYPSKRAKYGRYTNERRLVRALGFSYILMEICGWSAAAALGKQR 167
            L++TA+RL VMYYPS RAKYGR T E+     L  +Y+L+E   W AAAA G +R
Sbjct:   74 LIMTALRLFVMYYPSTRAKYGRVTREKPWTCGLAATYLLVETVVWLAAAAQGIER 128
[Close]
BLAST of mRNA_L-elsbetiae_contig7.15783.1 vs. uniprot
Match: D8LLA9_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLA9_ECTSI)

HSP 1 Score: 51.6 bits (122), Expect = 4.730e-5
Identity = 26/96 (27.08%), Postives = 54/96 (56.25%), Query Frame = 3 
Query:    6 VLTAVRLLVMYYPSKRAKYGRYTN-ERRLVRALGFSYILMEICGWSAAAALGKQRAASVVASLGPLLASLTIISATFFGWQLKGVHDLSNMGRDIR 290
            +L  +R++VMY PS+R ++GRY   E  +V+ L  +Y+++E+  W     +G  R AS + ++  +   +T+ ++     QL+   D+  +  +I+
Sbjct:   95 ILRGLRVIVMYTPSRRQRWGRYLKKEAAMVKVLLTAYVIVEVAAWIVVRHVGLARVASFMVTVVKIDTVVTLSASLALFGQLRRTQDVFKVSLEIQ 190
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7.15783.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5JIZ3_9PHAE8.840e-2453.92RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LTR6_ECTSI1.150e-1748.54Developmental regulator FlbA n=1 Tax=Ectocarpus si... [more]
A0A6H5KX00_9PHAE1.580e-1746.60RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KVN6_9PHAE4.200e-1747.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G0P6_ECTSI1.940e-856.36RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5J8W8_9PHAE2.510e-854.55RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LLA9_ECTSI4.730e-527.08RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7contigL-elsbetiae_contig7:4981..5978 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.6
Seed ortholog evalue6.5e-11
Seed eggNOG ortholog2880.D8LTR6
Hectar predicted targeting categorysignal anchor
EggNOG free text desc.Regulator of G protein signaling domain
EggNOG OGs2D0MX@1,2SERP@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size383
Cds size324
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7.15783.1prot_L-elsbetiae_contig7.15783.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7 5008..5946 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816776.010384-UTR-L-elsbetiae_contig7:4980..50071622816776.010384-UTR-L-elsbetiae_contig7:4980..5007Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7 4981..5007 -
1691683804.3377812-UTR-L-elsbetiae_contig7:4980..50071691683804.3377812-UTR-L-elsbetiae_contig7:4980..5007Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7 4981..5007 -
1622816776.0710065-UTR-L-elsbetiae_contig7:5946..59781622816776.0710065-UTR-L-elsbetiae_contig7:5946..5978Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7 5947..5978 -
1691683804.3840196-UTR-L-elsbetiae_contig7:5946..59781691683804.3840196-UTR-L-elsbetiae_contig7:5946..5978Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7 5947..5978 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816776.0273788-CDS-L-elsbetiae_contig7:5007..51971622816776.0273788-CDS-L-elsbetiae_contig7:5007..5197Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7 5008..5197 -
1691683804.351419-CDS-L-elsbetiae_contig7:5007..51971691683804.351419-CDS-L-elsbetiae_contig7:5007..5197Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7 5008..5197 -
1622816776.0415468-CDS-L-elsbetiae_contig7:5619..57391622816776.0415468-CDS-L-elsbetiae_contig7:5619..5739Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7 5620..5739 -
1691683804.3625154-CDS-L-elsbetiae_contig7:5619..57391691683804.3625154-CDS-L-elsbetiae_contig7:5619..5739Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7 5620..5739 -
1622816776.05526-CDS-L-elsbetiae_contig7:5932..59461622816776.05526-CDS-L-elsbetiae_contig7:5932..5946Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7 5933..5946 -
1691683804.3746011-CDS-L-elsbetiae_contig7:5932..59461691683804.3746011-CDS-L-elsbetiae_contig7:5932..5946Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7 5933..5946 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7.15783.1

>prot_L-elsbetiae_contig7.15783.1 ID=prot_L-elsbetiae_contig7.15783.1|Name=mRNA_L-elsbetiae_contig7.15783.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=108bp
MYYPSKRAKYGRYTNERRLVRALGFSYILMEICGWSAAAALGKQRAASVV
ASLGPLLASLTIISATFFGWQLKGVHDLSNMGRDIRLVVGFLLASFRKQS
DHLVMCS*
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mRNA from alignment at L-elsbetiae_contig7:4981..5978-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7.15783.1 ID=mRNA_L-elsbetiae_contig7.15783.1|Name=mRNA_L-elsbetiae_contig7.15783.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=998bp|location=Sequence derived from alignment at L-elsbetiae_contig7:4981..5978- (Laminarionema elsbetiae ELsaHSoW15)
CCCTCGTCTTGACAGCGGTTCGCCTTTTGGTGATGTACTATCCTAGGTGG
GTCAGGGGATATGCTTGGTTGGCTGCATTTATGCACACTCGGTAACTGTC
CTGATTTAACGTCTCCCCCTCGCCCCATTTGAATTGTAAACCGCACGTGA
GACATTCACTCAACGTGATGGCTTCAGTCTTTGTTGTGGTGGTCTCAATC
AGTTTACAATAAATCCCGCCCCTTGGCCCCTTGTTGCAGCAAAAGAGCAA
AGTACGGGCGTTACACCAACGAAAGACGCCTGGTTCGTGCTCTTGGTTTT
TCGTACATACTGATGGAAATCTGTGGGTGGTCGGCAGCCGCAGCACTTGG
CAAGCAAAGGTCAGAGAGTTTGGTCGCAGCAGCGGCTCATTGTAGCGTTG
ACGGGGTGGTCGTTTTTGCTTTATGGGCGGCGACCTCTTTTCTTTCCGCA
TTCGGTACCCCCTTTGGTAAACTGTAGAGATATTTGGAGGGGGGGGGGCG
GGGTTCCTCTTACGACACAAACCAGCGTATATCGCACCAGTGATTGGCCC
GATTTCGGGACACCCGTTGGAATCGACCCATCCGATTGTTGTGCGCCTTG
CAATATTTAGACGATCTTCGTTCAAGTCGACGATCAAAGATGATGCCTTC
TTGGCAATATTTGCAGTTTAGCGTACCAAAGACGAAATCAGAGGCTCTCT
AAATGAAGTACTGGTAATGTTTCCAGCAACCTACCGAAATCTCCGTTGCT
GATGATTGCCCTCCTGAATGTTATCGATCAGGGCTGCAAGCGTGGTCGCG
TCGCTGGGCCCACTTTTGGCTTCGCTAACGATAATATCAGCGACGTTTTT
CGGCTGGCAGTTGAAGGGGGTCCACGACTTGAGCAACATGGGCCGGGATA
TTCGGCTCGTTGTGGGGTTTTTGCTGGCATCCTTCCGTAAGCAGAGCGAC
CACCTGGTCATGTGTTCATGATTATCCTGTCCTGCATAGGGAGGCGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7:4981..5978-

>mRNA_L-elsbetiae_contig7.15783.1 ID=mRNA_L-elsbetiae_contig7.15783.1|Name=mRNA_L-elsbetiae_contig7.15783.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=648bp|location=Sequence derived from alignment at L-elsbetiae_contig7:4981..5978- (Laminarionema elsbetiae ELsaHSoW15)
ATGTACTATCCTAGATGTACTATCCTAGCAAAAGAGCAAAGTACGGGCGT
TACACCAACGAAAGACGCCTGGTTCGTGCTCTTGGTTTTTCGTACATACT
GATGGAAATCTGTGGGTGGTCGGCAGCCGCAGCACTTGGCAAGCAAAGCA
AAAGAGCAAAGTACGGGCGTTACACCAACGAAAGACGCCTGGTTCGTGCT
CTTGGTTTTTCGTACATACTGATGGAAATCTGTGGGTGGTCGGCAGCCGC
AGCACTTGGCAAGCAAAGGGCTGCAAGCGTGGTCGCGTCGCTGGGCCCAC
TTTTGGCTTCGCTAACGATAATATCAGCGACGTTTTTCGGCTGGCAGTTG
AAGGGGGTCCACGACTTGAGCAACATGGGCCGGGATATTCGGCTCGTTGT
GGGGTTTTTGCTGGCATCCTTCCGTAAGCAGAGCGACCACCTGGTCATGT
GTTCATGAGGCTGCAAGCGTGGTCGCGTCGCTGGGCCCACTTTTGGCTTC
GCTAACGATAATATCAGCGACGTTTTTCGGCTGGCAGTTGAAGGGGGTCC
ACGACTTGAGCAACATGGGCCGGGATATTCGGCTCGTTGTGGGGTTTTTG
CTGGCATCCTTCCGTAAGCAGAGCGACCACCTGGTCATGTGTTCATGA
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