mRNA_L-elsbetiae_contig7.15782.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7.15782.1
Unique NamemRNA_L-elsbetiae_contig7.15782.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig7.15782.1 vs. uniprot
Match: D8LTR6_ECTSI (Developmental regulator FlbA n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTR6_ECTSI)

HSP 1 Score: 187 bits (476), Expect = 2.190e-50
Identity = 107/227 (47.14%), Postives = 142/227 (62.56%), Query Frame = 1
Query:   94 FMRPDSLERKYGTIVFMALSHTPTVWILNIRPAREALLHEPGWA-SKLPFS--RGFRRTSRVAVTVGITKKSSNRGDRASCE---DSCRLAGIMACEPFRAAFGDFCHKSLCSESFQFLVDVFDFKKEVLLETAGHDEARSFKGFRAYLAIVNDYIKDGSLSEVNIDSRTKRDILGCTTFNVYSSLGMKEREEIFSAAEKAISKVLMDNLVNKFMMSRQYRAVVDFE 756
            ++    +E KY TIV MALSH P VW+ NIRP RE   + P    S+  F     +RR S   + VG+    +N     + E   D  RL  IM  +P R AFG+FC +SLC ESFQFLVDV +FK +++ ++A  +  +SF GF  YLA+VNDYIKDGS SEVNI S TKR I+    F  Y++L +++R++IF  AE+ I  VL DNL+NKF++S  Y  VVDFE
Sbjct:  211 YVSMSPMEYKYYTIVLMALSHPPIVWLTNIRPVREVERNIPARRRSRKDFQLPSPYRRWSTKNIRVGVAADENNNSLPWNGEVYLDDNRLTSIMNFQPLREAFGEFCRRSLCGESFQFLVDVEEFK-DLIADSAAEETEKSFGGFGGYLAVVNDYIKDGSHSEVNIASTTKRSIMQHMKFTAYAALKLEDRKDIFGPAEREIKIVLADNLLNKFLVSDPYTKVVDFE 436          
BLAST of mRNA_L-elsbetiae_contig7.15782.1 vs. uniprot
Match: A0A6H5KX00_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX00_9PHAE)

HSP 1 Score: 172 bits (435), Expect = 1.650e-44
Identity = 100/228 (43.86%), Postives = 132/228 (57.89%), Query Frame = 1
Query:   94 FMRPDSLERKYGTIVFMALSHTPTVWILNIRPAREALLHEPG-------WASKLPFSRGFRRTSRVAVTVGITKKSSNRGDRASCEDSCRLAGIMACEPFRAAFGDFCHKSLCSESFQFLVDVFDFKKEVLLETAGHDEARSFKGFRAYLAIVNDYIKDGSLSEVNIDSRTKRDILGCTTFNVYSSLGMKEREEIFSAAEKAISKVLMDNLVNKFMMSRQYRAVVDFE 756
            ++     E +Y  I   AL H P VW++NIRP  E   + P        +    PF R   +  RV V       +      A   D+ RL  IM  +P R AFG+FC +SLC ESFQFLVDV +FK +++ ++A     +SF GF  YLAIVNDYIKDGS SEVNI S TKR I+    F  Y++L ++ER+++F  AE+ I  VL DNL+NKF++S  Y  VVDFE
Sbjct:  211 YLSMSPTEYQYCKITLTALLHPPIVWLINIRPVLEVGRNIPARRRSRKSFHLPSPFRRRSTKNIRVGVAADEDINTLPWNGEAYLNDN-RLTSIMNFQPLREAFGEFCRRSLCGESFQFLVDVEEFK-DLIADSAAETSEKSFGGFGGYLAIVNDYIKDGSHSEVNIASTTKRSIMQYMKFAAYAALQLEERKDLFGPAEREIKIVLADNLLNKFLVSDPYTKVVDFE 436          
BLAST of mRNA_L-elsbetiae_contig7.15782.1 vs. uniprot
Match: A0A6H5JIZ3_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIZ3_9PHAE)

HSP 1 Score: 146 bits (369), Expect = 3.720e-35
Identity = 97/234 (41.45%), Postives = 128/234 (54.70%), Query Frame = 1
Query:  112 LERKYGTIVFMALSHTPTVWILNIRPAREALLHEP------GWASKLPFSRGFRR--TSRV---AVTVGITKKSSNRGDRASCEDSCRLAGIMACEPFRAAFGDFCHKSLCSESFQFLVDVFDFKKEVLLETAGHDEARSFK----------GFRAYLAIVNDYIKDGSLSEVNIDSRTKRDILGCTTFNVYSSLGMKEREEIFSAAEKAISKVLMDNLVNKFMMSRQYRAVVD 750
            L  KY  ++F+ +SH P VWILNIRP +E L H P      G    L  S   R   TS +   AVT  +++  S R  R S  +S RLAGIM   P R AFG+FC KSLCSESFQFL+D  +F+  ++      D   S +          G      +VN+YIKDG+ SE+NI S TKRDI+       ++SL    R  IF  AE+ I ++L DNL+ +F+ S QY+  VD
Sbjct:  208 LAFKYFFVIFITISHPPIVWILNIRPIQEVLHHAPRNSIPKGVQVLLALSSRRRGGITSTIVGEAVTPDVSQNPS-RHSRESYVESNRLAGIMNYLPLREAFGEFCQKSLCSESFQFLLDASEFRGVIVEGPVDGDANGSAEEENEAPTHTSGLGDVATMVNEYIKDGAPSEINIGSDTKRDIMELAKVEAFASLDQDARLLIFVQAEREIRRILEDNLMARFLASAQYKRAVD 440          
BLAST of mRNA_L-elsbetiae_contig7.15782.1 vs. uniprot
Match: D7G0P5_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0P5_ECTSI)

HSP 1 Score: 140 bits (354), Expect = 2.240e-34
Identity = 101/270 (37.41%), Postives = 136/270 (50.37%), Query Frame = 1
Query:    7 QV*DLTAA*GKRRCLNIFVFPAIYVVIKLFMRP-DSLERKYGTIVFMALSHTPTVWILNIRPAREALLHEP------GWASKLPFSRGFRRTSRVA-----VTVGITKKSSNRGDRASCEDSCRLAGIMACEPFRAAFGDFCHKSLCSESFQFLVDVFDFKKEVLLETAGHDEARSFK----------GFRAYLAIVNDYIKDGSLSEVNIDSRTKRDILGCTTFNVYSSLGMKEREEIFSAAEKAISKVLMDNLVNKFMMSRQYRAVVD 750
            ++ DL+      R + I +   + V   + + P  +L  KY ++V M LSH   VWILNIRP +E L H P      G    L  S   R  S  A     VT  +T+  S  G R S  DS RLAGIM   P R AFG+FC KS CSE   FL+D  +F+  ++      D   S +          G     A+VN+YIKDG+ SE+NI S TK DI+       ++SL    R  IF  AE+ I ++L DNL+ +F+ S QY+  VD
Sbjct:   25 RIHDLSNMGRDIRLVGIILLICVPVFTAIQVLPLSTLAFKYFSVVSMTLSHPAIVWILNIRPIQEVLHHAPRNSIPKGVQMLLALSSRRRGGSSSAIGGEAVTTDVTQNPSQHG-RESYVDSNRLAGIMNYLPLREAFGEFCQKSFCSE---FLLDASEFRGVIVEGPVEGDANGSAEEENEAPTRTSGLGDVAAMVNEYIKDGAPSEINIGSDTKHDIMELAKVEAFTSLDQDARRLIFGKAEREIRRILEDNLMARFLASAQYKRAVD 290          
BLAST of mRNA_L-elsbetiae_contig7.15782.1 vs. uniprot
Match: A0A6H5J8W8_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8W8_9PHAE)

HSP 1 Score: 127 bits (318), Expect = 6.670e-29
Identity = 101/286 (35.31%), Postives = 139/286 (48.60%), Query Frame = 1
Query:   34 GKRRCLNIFVFPAIYVV--------IKLF-MRPDSLERKYGTIV-----FMALSHT-----PTVWIL--------NIRPAREALLHE------PGWASKLPFSRGFRR--TSRVA---VTVGITKKSSNRGDRASCEDSCRLAGIMACEPFRAAFGDFCHKSLCSESFQFLVDVFDFKKEVLLE---------TAGHDEARSFKGFRAYLAIVNDYIKDGSLSEVNIDSRTKRDILGCTTFNVYSSLGMKEREEIFSAAEKAISKVLMDNLVNKFMMSRQYRAVVD 750
            G    LN+  FPA+++         ++LF M   S   KYG +         L+ T       VW+         NIRP +E L H        G    L  S   RR  TS +    VT  +T+  S    R    DS RLAGIM   P R AFG+FC KSLCSESFQFL+D  +F+  V++E         +A  +     +       +VN+YIKDG+ SE+NI S TK DI+       ++SL    R+ IF  AE+ I ++L DNL+ +F++S QY+  VD
Sbjct:   54 GNLEILNVVGFPALWIAEIALIMTALRLFVMYYPSTRAKYGRVTREKPWTCGLAATYLLVETVVWLAAAAQGIERNIRPIQEVLYHARRNGIPKGVQMLLALSSRARRRSTSTIGGEEVTSDVTQNPSQHS-REPYIDSNRLAGIMNYLPLREAFGEFCQKSLCSESFQFLLDASEFRG-VIVEGPVDGDANGSAEEENEAPTRRLGDVATMVNEYIKDGAPSEINIGSDTKHDIMELAKAEAFASLDQDARKLIFVKAEREIKRILEDNLMARFLVSAQYKRAVD 337          
BLAST of mRNA_L-elsbetiae_contig7.15782.1 vs. uniprot
Match: A0A6H5JD29_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD29_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 7.380e-28
Identity = 86/216 (39.81%), Postives = 112/216 (51.85%), Query Frame = 1
Query:  178 NIRPAREALLHEP------GWASKLPFSRGFRRTSRV----AVTVGITKKSSNRGDRASCEDSCRLAGIMACEPFRAAFGDFCHKSLCSE-----SFQFLVDVFDFKKEVLLETAGHDEARSFK----------GFRAYLAIVNDYIKDGSLSEVNIDSRTKRDILGCTTFNVYSSLGMKEREEIFSAAEKAISKVLMDNLVNKFMMSRQYRAVVD 750
            NIRP +E L H P      G    L  S   RR+S      AVT  +T   S R  R S  DS RLAG+M   P R AFG+FC KSLCSE     SF+FL+D   FK  ++      D   S +          G    +A+VN+YIKDG+ SE+NI S TK DI+       ++SL    R+ IF  AE+ I  +L DN++ +F+ S QY+  VD
Sbjct:   28 NIRPIQEVLHHAPRNSIPKGVQMLLALSSRRRRSSAAIGGEAVTADVTHNPS-RHSRESYVDSNRLAGLMNYLPLREAFGEFCQKSLCSEISRCVSFRFLLDASKFKGVIVEGPVDGDANGSAEEEIEAPTHTSGLGDVVAMVNEYIKDGAPSEINIGSDTKHDIMELAKVEAFASLDQDARKLIFVKAEREIKMILEDNIMARFLASAQYKRAVD 242          
BLAST of mRNA_L-elsbetiae_contig7.15782.1 vs. uniprot
Match: D7G0P6_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0P6_ECTSI)

HSP 1 Score: 118 bits (296), Expect = 1.180e-25
Identity = 104/297 (35.02%), Postives = 138/297 (46.46%), Query Frame = 1
Query:   49 LNIFVFPAIYVV--------IKLF-MRPDSLERKYGTIV-----FMALSHT-----PTVWIL--------NIRPAREALLHEP------GWASKLPFSRGFRRTSRV-----AVTVGITKKSSNRGDRASCEDSCRLAGIMACEPFRAAFGDFCHKSLCSESFQFLVDVFDFKKEVLLETAGHDEARSFK----------GFRAYLAIVNDYIKDGSLSEVNIDSRTKRDILGCTTFNVYSSL------GMKE---------REEIFSAAEKAISKVLMDNLVNKFMMSRQYRAVVD 750
            LN+  FPA+++         ++LF M   S   KYG +         L+ T       VW+         NIRP +E L H P      G    L  S   R  S       AVT  +T+  S  G R S  DS RLAGIM   P R AFG+FC KSLCSESFQFL+D  +F+  ++      D   S +          G     A+VN+YIKDG+ SE+NI S TK  I+       ++SL      G  E         R+ IF  AE+ I ++L DNL+ +F+ S QY+  VD
Sbjct:   74 LNLVGFPALWIAEIALVLTALRLFVMYYPSTRAKYGRVTREKPWACGLAATYLLVETVVWLAGAAQGTERNIRPIQEVLHHAPRNSIPKGVQMLLALSSRRRGGSSSPIGGEAVTTDVTQNPSQHG-RESYVDSNRLAGIMNYLPLREAFGEFCQKSLCSESFQFLLDASEFRGVIVEGPVEGDANGSAEEENEAPAHTSGLGDVAAMVNEYIKDGAPSEINIGSDTKHAIMELAKVEAFASLEQGRQGGRLEAFALLDQDARKLIFVKAEREIRRILEDNLMARFLASAQYKRAVD 369          
BLAST of mRNA_L-elsbetiae_contig7.15782.1 vs. uniprot
Match: D7G3E2_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3E2_ECTSI)

HSP 1 Score: 111 bits (278), Expect = 7.980e-25
Identity = 70/168 (41.67%), Postives = 92/168 (54.76%), Query Frame = 1
Query:  277 TVGITKKSSNRGDRASCEDSCRLAGIMACEPFRAAFGDFCHKSLCSESFQFLVDVFDFKKEVLLETAGHDEARSFK----------GFRAYLAIVNDYIKDGSLSEVNIDSRTKRDILGCTTFNVYSSLGMKEREEIFSAAEKAISKVLMDNLVNKFMMSRQYRAVVD 750
            T  +T+  S R  R S  DS RLAGIM   P R AFG+FC KSLC ESFQFL D  +F+  ++      D   S +          G     A+VN+YIKDG+ SE+NI S  K DI+       ++SL    R  IF  AE+ I ++L DNL+ +F+ S QY+  VD
Sbjct:   23 TSDVTQNPSQRS-RESYVDSNRLAGIMNYLPLREAFGEFCQKSLCGESFQFLRDASEFRGVIVEGPVDGDANGSAEEEQEAPVHTSGLGDVAAMVNEYIKDGAPSEINIGSDIKHDIMELAKVETFASLDQDARLLIFVKAEREIRRILEDNLMARFLASAQYKRAVD 189          
BLAST of mRNA_L-elsbetiae_contig7.15782.1 vs. uniprot
Match: D7G0P7_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0P7_ECTSI)

HSP 1 Score: 107 bits (266), Expect = 3.450e-23
Identity = 77/204 (37.75%), Postives = 100/204 (49.02%), Query Frame = 1
Query:  178 NIRPAREALLHE------PGWASKLPFSRGFRRTSRVAVTVG-------ITKKSSNRGDRASCEDSCRLAGIMACEPFRAAFGDFCHKSLCSESFQFLVDVFDFKKEVLLETAGHDEARSFKGFRAYLAIVNDYIKDGSLSEVNIDSRTKRDILGCTTFNVYSSLGMKEREEIFSAAEKAISKVLMDNLVNKFMMSRQYRAVVD 750
            NIRP +E L H        G    L  S   RR S  + T+G       +T+  S  G R S  DS RLAGIM   P R AFG+FC KSLCSE                    G     + +      A+VN+Y+KDG+ SE+NI S TK +I+  T    ++SL    R+ IF  AE+ I  +L DNL+ KF+ S QY+  VD
Sbjct:    4 NIRPIQEVLRHAGRNSIPKGVQMLLALSSRRRRGS--SSTIGGEEVISDVTQNPSQHG-RESYVDSNRLAGIMNYLPLREAFGEFCQKSLCSE-----------------RRRGEGGTNTHERVGGVAAMVNEYVKDGAPSEINISSNTKHNIMELTKIEAFASLDQDARKLIFVKAEREIRSMLEDNLMAKFLASAQYKRAVD 187          
BLAST of mRNA_L-elsbetiae_contig7.15782.1 vs. uniprot
Match: A0A6H5K976_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K976_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 6.110e-23
Identity = 78/230 (33.91%), Postives = 115/230 (50.00%), Query Frame = 1
Query:   97 MRPDSLERKYGTIVFMALSHTPTVWILNIRPAREAL-------LHEPGWASKLPFSRGFRRTSRVAVTVG-----ITKKSSNRGDRASCEDSCRLAGIMACEPFRAAFGDFCHKSLCSESFQFLVDVFDFKKEVLLETAGHDEARSFKGFRAYLAIVNDYIKDGSLSEVNIDSRTKRDILGCTTFNVYSSLGMKEREEIFSAAEKAISKVLMDNLVNKFMMSRQYRAVVD 750
            M P ++   Y  I+F+       VWI NI+P R+ L       ++  G AS  P+     R+  VA+ V       TK SS++      +D  +L  I+   P   AFG+FC K+LCSES  FL    DF + +    A +D       F  +  IV+ YI+DGS  EVNI+S+TK  IL  T+ + +  L + +   I   A K I K+L +NL NKF  + Q++ + D
Sbjct:  262 MVPATVLNFY-LILFLTTRFGTAVWITNIQPVRKVLQRRADHPINAGGIASLFPYVPWTTRSGAVAIDVMNESKVFTKPSSSKFTSVKLDD--KLEEILRFPPLLEAFGEFCRKALCSESLMFLTAGKDFHESLDASDADYDTI-----FARFNEIVDQYIRDGSSFEVNIESKTKAQILSRTSMSSFKELPLDDAVCILDLAVKEIGKMLQENLYNKFRSTEQFKEIKD 483          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7.15782.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
D8LTR6_ECTSI2.190e-5047.14Developmental regulator FlbA n=1 Tax=Ectocarpus si... [more]
A0A6H5KX00_9PHAE1.650e-4443.86RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JIZ3_9PHAE3.720e-3541.45RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G0P5_ECTSI2.240e-3437.41RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5J8W8_9PHAE6.670e-2935.31RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JD29_9PHAE7.380e-2839.81RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G0P6_ECTSI1.180e-2535.02RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G3E2_ECTSI7.980e-2541.67RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G0P7_ECTSI3.450e-2337.75RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K976_9PHAE6.110e-2333.91RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7contigL-elsbetiae_contig7:1674..4255 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score187.6
Seed ortholog evalue6.3e-45
Seed eggNOG ortholog2880.D8LTR6
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Regulator of G protein signaling domain
EggNOG OGs2D0MX@1,2SERP@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons5
Model size1532
Cds size663
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816775.8858569-UTR-L-elsbetiae_contig7:1673..19441622816775.8858569-UTR-L-elsbetiae_contig7:1673..1944Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7 1674..1944 -
1691683804.2405233-UTR-L-elsbetiae_contig7:1673..19441691683804.2405233-UTR-L-elsbetiae_contig7:1673..1944Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7 1674..1944 -
1622816775.8971977-UTR-L-elsbetiae_contig7:1977..24791622816775.8971977-UTR-L-elsbetiae_contig7:1977..2479Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7 1978..2479 -
1691683804.2643418-UTR-L-elsbetiae_contig7:1977..24791691683804.2643418-UTR-L-elsbetiae_contig7:1977..2479Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7 1978..2479 -
1622816775.9726093-UTR-L-elsbetiae_contig7:4159..42551622816775.9726093-UTR-L-elsbetiae_contig7:4159..4255Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7 4160..4255 -
1691683804.3148162-UTR-L-elsbetiae_contig7:4159..42551691683804.3148162-UTR-L-elsbetiae_contig7:4159..4255Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7 4160..4255 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816775.9134636-CDS-L-elsbetiae_contig7:2479..25991622816775.9134636-CDS-L-elsbetiae_contig7:2479..2599Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7 2480..2599 -
1691683804.2747447-CDS-L-elsbetiae_contig7:2479..25991691683804.2747447-CDS-L-elsbetiae_contig7:2479..2599Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7 2480..2599 -
1622816775.92983-CDS-L-elsbetiae_contig7:2922..31441622816775.92983-CDS-L-elsbetiae_contig7:2922..3144Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7 2923..3144 -
1691683804.285519-CDS-L-elsbetiae_contig7:2922..31441691683804.285519-CDS-L-elsbetiae_contig7:2922..3144Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7 2923..3144 -
1622816775.944144-CDS-L-elsbetiae_contig7:3512..37531622816775.944144-CDS-L-elsbetiae_contig7:3512..3753Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7 3513..3753 -
1691683804.2943516-CDS-L-elsbetiae_contig7:3512..37531691683804.2943516-CDS-L-elsbetiae_contig7:3512..3753Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7 3513..3753 -
1622816775.9577956-CDS-L-elsbetiae_contig7:4079..41591622816775.9577956-CDS-L-elsbetiae_contig7:4079..4159Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7 4080..4159 -
1691683804.3045256-CDS-L-elsbetiae_contig7:4079..41591691683804.3045256-CDS-L-elsbetiae_contig7:4079..4159Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7 4080..4159 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7.15782.1prot_L-elsbetiae_contig7.15782.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7 2480..4159 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7.15782.1

>prot_L-elsbetiae_contig7.15782.1 ID=prot_L-elsbetiae_contig7.15782.1|Name=mRNA_L-elsbetiae_contig7.15782.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=221bp
MRPDSLERKYGTIVFMALSHTPTVWILNIRPAREALLHEPGWASKLPFSR
GFRRTSRVAVTVGITKKSSNRGDRASCEDSCRLAGIMACEPFRAAFGDFC
HKSLCSESFQFLVDVFDFKKEVLLETAGHDEARSFKGFRAYLAIVNDYIK
DGSLSEVNIDSRTKRDILGCTTFNVYSSLGMKEREEIFSAAEKAISKVLM
DNLVNKFMMSRQYRAVVDFE*
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mRNA from alignment at L-elsbetiae_contig7:1674..4255-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7.15782.1 ID=mRNA_L-elsbetiae_contig7.15782.1|Name=mRNA_L-elsbetiae_contig7.15782.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2582bp|location=Sequence derived from alignment at L-elsbetiae_contig7:1674..4255- (Laminarionema elsbetiae ELsaHSoW15)
TGTGCGCAAGTATAGGACTTAACCGCTGCCTGAGGCAAACGCCGCTGTTT GAATATATTTGTCTTCCCAGCCATCTACGTGGTGATCAAGCTATTTATGC GGCCCGATTCGCTGGAAAGGAAATACGGAACAATCGTGTTCATGGCGCTA TCGCACACCCCTACTGTCTGGATCCTGTAAGTACCTCTGTCCGGAAGAAA AGGGAGTTCCAGATGCACTATGTACGTTCGCCGCTCGTTAGACGTGGGCG CCTGCCAAACGTTCGTAGCCAGCTGCAGTGAGGGTTTGCACACGACTATT CAACAACATATGATGATGGCGATGTTGCGGGCAGCATGCTCTGCCTGCGT TGGTGGTTAATATGACGCAGCATCTTGCGTCGTATGTATGTGCATAGATA AACCAATAGCATAGATGAACGAGTCGGCTCACCGTACCCCCAAAATAACA GATCGTCCGATTTTCTCTCTGTATCCACCGTACCATATTTCGTGTATTCC AGCAATATCAGGCCTGCTAGAGAAGCCCTACTTCATGAGCCCGGGTGGGC GTCGAAGCTGCCGTTCAGCAGAGGGTTCAGGCGCACCTCCCGCGTAGCCG TTACCGTAGGCATAACCAAAAAGAGCTCGAATCGTGGAGACCGCGCGTCA TGTGAAGACTCGTGCCGGCTTGCGGGGATCATGGCGTGTGAGCCCTTTCG TGCGGCGTTCGGCGACTTCTGCCACAAATCTCTGTGCAGCGAGGCAAGTG GCCGGGGTGCTCTCGAGACAAACAAGCCGACAGGGGCCAAGAATGAATGC GTGTCAGTTAGTCGGTGGTGTGCGGTGGCCTCTCGGAGGAAGTCAGTCCC CTCATCTGGCTGTATTACTTGATGCCTGCTCACCACTGAAATGGGCATTT TCTCGGCACTGAGGAGGCTTGCAGGACCCCTAGATATAGGCCTTGCCTAA TATCGACCATGTGCGGATGCCACCTTTGTGGGTGTGTTTAGCTTGCCTGT TTTTTGCACTCTATGTGCAGCTTTCCTCTTACAGCAGCATGCTTCCAGCT CTCGCTAATCTGTTGTTCACCTTTCGCGCAATTGTGGGCCGGCCCTTATC GTATCTTTCAGTCTTTCCAGTTCCTCGTGGATGTTTTCGACTTCAAAAAA GAAGTCTTGCTCGAAACTGCAGGCCATGACGAAGCGAGAAGCTTCAAAGG GTTTAGAGCTTATCTCGCCATTGTCAACGACTATATCAAGGATGGCTCGC TCTCGGAAGTGAACATCGATAGTAGGACTAAGCGCGACATCCTGGGGTGC ACTACGTTCAACGTCTACTCTTCGCTTGGTATGGTGAGTGAGTGAGAGGG TAGAGAGAGAGAGTAAAGAAGGCCTGGATGCCTGAGGGTGGGTAAATATC ACGCGTGTATTCTAAAGCAACTCAGCGGGTTGTATGGACTGTTTCGTCTC TGTCCAATGTTTGATTGACCCACAACACATGTTCCGAGCCGTCTCCCTGC TGCCACGGTACTATGTGTAAATGGCGAACGCGTATGTATGTATAGGGCGC GCGTGAGCCTTCATCGCAGACAGCGTTCTTTGTCATACTGGAGATTACTG AAGCCTCTGCCCCCGATCTTATTTCGTGTATGTAACTTCCGGTGTGTCCT CTGCAGAAAGAACGCGAGGAGATATTCTCAGCTGCGGAGAAAGCGATTTC CAAGGTGCTTATGGACAACCTTGTGAACAAATTTATGATGTCAAGACAGT ACAGAGCAGTCGTTGATTTCGAGTGAACCTCTCTCGTGCTGAGTAAGACC AACGTGTCGCGACACACCAGAACGGGGAGAACCCCAGAGGTTTTTTTCGT GAAGCGGCAACTACAGCAGTGATTTGGAGGCAGCGTTGCAGATACGACGT TAATACGGTACTACTTGCGAAGTACACCTGAACCCGTCTACAGGACATGA ACGGCGTGAACCGGTACTTGCGAAGTACACCTAAACCCGTCTACAGGAGA TGAACGGTGTGAATGAGTACCGTAATCATCGGAGTCACCGCACATATTGG AGTCATGGCACCCCTGGGCGATAAAAAAATGTGTTCCGAATGATTTAATT CGATTATCGCACAGGCATCGGAGCTATCGCACACTGTCCGATAGCTCCGA TATGTGCGGTGAGGTTAGGCGACATAGTGCGAGGGGTGTCCACCATTTGC GTGAGGGCACAAGCGGTAGTACTGGGCGCTTGTATCATGGGCTCCACTGT TTTGCTTCGGCCGGCACGGCGCGCAAACGCAATGGCCATTTTAAGTTTTG TATTGTTGTGTATTTTCCTTAGTTCCTTAGAATTTCTAGAATTTCTTTAG TTCCTCCTTAGTTCCTTAGGTAGAACTAAGGTCTTAGAGTTAAGGTCTTC CCTCTGCACTAAGCTCTGAGACCGATTTTATAGAAAGGTGAAGCCTACAA AAAGTGTGATAAAATCCAAAGCTAAGTGTGCGTTTGTTTACCCAGCGGAT GTTGAATCAGCGAAGAAGAGGAATATTGAATCACAGGACGTTGGTGGCTC GCTGTCGCTCGTAAGATCTTGGCATGTTTTCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7:1674..4255-

>mRNA_L-elsbetiae_contig7.15782.1 ID=mRNA_L-elsbetiae_contig7.15782.1|Name=mRNA_L-elsbetiae_contig7.15782.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1326bp|location=Sequence derived from alignment at L-elsbetiae_contig7:1674..4255- (Laminarionema elsbetiae ELsaHSoW15)
ATGCGGCCCGATTCGCTGGAAAGGAAATACGGAACAATCGTGTTCATGGC
GCTATCGCACACCCCTACTGTCTGGATCCTATGCGGCCCGATTCGCTGGA
AAGGAAATACGGAACAATCGTGTTCATGGCGCTATCGCACACCCCTACTG
TCTGGATCCTCAATATCAGGCCTGCTAGAGAAGCCCTACTTCATGAGCCC
GGGTGGGCGTCGAAGCTGCCGTTCAGCAGAGGGTTCAGGCGCACCTCCCG
CGTAGCCGTTACCGTAGGCATAACCAAAAAGAGCTCGAATCGTGGAGACC
GCGCGTCATGTGAAGACTCGTGCCGGCTTGCGGGGATCATGGCGTGTGAG
CCCTTTCGTGCGGCGTTCGGCGACTTCTGCCACAAATCTCTGTGCAGCGA
GCAATATCAGGCCTGCTAGAGAAGCCCTACTTCATGAGCCCGGGTGGGCG
TCGAAGCTGCCGTTCAGCAGAGGGTTCAGGCGCACCTCCCGCGTAGCCGT
TACCGTAGGCATAACCAAAAAGAGCTCGAATCGTGGAGACCGCGCGTCAT
GTGAAGACTCGTGCCGGCTTGCGGGGATCATGGCGTGTGAGCCCTTTCGT
GCGGCGTTCGGCGACTTCTGCCACAAATCTCTGTGCAGCGAGTCTTTCCA
GTTCCTCGTGGATGTTTTCGACTTCAAAAAAGAAGTCTTGCTCGAAACTG
CAGGCCATGACGAAGCGAGAAGCTTCAAAGGGTTTAGAGCTTATCTCGCC
ATTGTCAACGACTATATCAAGGATGGCTCGCTCTCGGAAGTGAACATCGA
TAGTAGGACTAAGCGCGACATCCTGGGGTGCACTACGTTCAACGTCTACT
CTTCGCTTGGTATGTCTTTCCAGTTCCTCGTGGATGTTTTCGACTTCAAA
AAAGAAGTCTTGCTCGAAACTGCAGGCCATGACGAAGCGAGAAGCTTCAA
AGGGTTTAGAGCTTATCTCGCCATTGTCAACGACTATATCAAGGATGGCT
CGCTCTCGGAAGTGAACATCGATAGTAGGACTAAGCGCGACATCCTGGGG
TGCACTACGTTCAACGTCTACTCTTCGCTTGGTATGAAAGAACGCGAGGA
GATATTCTCAGCTGCGGAGAAAGCGATTTCCAAGGTGCTTATGGACAACC
TTGTGAACAAATTTATGATGTCAAGACAGTACAGAGCAGTCGTTGATTTC
GAGTGAAAAGAACGCGAGGAGATATTCTCAGCTGCGGAGAAAGCGATTTC
CAAGGTGCTTATGGACAACCTTGTGAACAAATTTATGATGTCAAGACAGT
ACAGAGCAGTCGTTGATTTCGAGTGA
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