mRNA_L-elsbetiae_contig1183.1578.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1183.1578.1
Unique NamemRNA_L-elsbetiae_contig1183.1578.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1183.1578.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1183contigL-elsbetiae_contig1183:9251..9903 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size653
Cds size585
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1183.1578.1prot_L-elsbetiae_contig1183.1578.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1183 9290..9874 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815385.8760715-UTR-L-elsbetiae_contig1183:9250..92891622815385.8760715-UTR-L-elsbetiae_contig1183:9250..9289Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1183 9251..9289 +
1691682872.5444477-UTR-L-elsbetiae_contig1183:9250..92891691682872.5444477-UTR-L-elsbetiae_contig1183:9250..9289Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1183 9251..9289 +
1622815385.8991766-UTR-L-elsbetiae_contig1183:9874..99031622815385.8991766-UTR-L-elsbetiae_contig1183:9874..9903Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1183 9875..9903 +
1691682872.5726771-UTR-L-elsbetiae_contig1183:9874..99031691682872.5726771-UTR-L-elsbetiae_contig1183:9874..9903Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1183 9875..9903 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815385.8871226-CDS-L-elsbetiae_contig1183:9289..98741622815385.8871226-CDS-L-elsbetiae_contig1183:9289..9874Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1183 9290..9874 +
1691682872.5591338-CDS-L-elsbetiae_contig1183:9289..98741691682872.5591338-CDS-L-elsbetiae_contig1183:9289..9874Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1183 9290..9874 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1183.1578.1

>prot_L-elsbetiae_contig1183.1578.1 ID=prot_L-elsbetiae_contig1183.1578.1|Name=mRNA_L-elsbetiae_contig1183.1578.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=195bp
MPAPLAHDVNHSLRSVLDAELRLLGAFQAEYRVLGARWMPAPLADDVNHS
LRSMLRAELRLLGAFQSIRRGLGARWVAARRTLSITGGDRRFNALVLEAG
VMLVGPVPAVRRVRGASRQTRESLPVGVATVAVRPFILLLSVHSTKLYLP
CTIQAKTFIRGLLRASWADALFSHPSLTVLWTRARSSGKSTRRE*
back to top

mRNA from alignment at L-elsbetiae_contig1183:9251..9903+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1183.1578.1 ID=mRNA_L-elsbetiae_contig1183.1578.1|Name=mRNA_L-elsbetiae_contig1183.1578.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=653bp|location=Sequence derived from alignment at L-elsbetiae_contig1183:9251..9903+ (Laminarionema elsbetiae ELsaHSoW15)
GCCTTCCAGGCCAAATGTCGCGCGCGTAGTGCAAGATGGATGCCCGCACC
GCTTGCTCACGACGTCAACCATTCCCTCCGAAGCGTGCTGGACGCAGAAC
TCCGCCTTCTTGGTGCCTTCCAGGCCGAATACCGGGTTCTTGGTGCAAGA
TGGATGCCCGCACCGCTTGCTGACGACGTTAACCATTCCCTCCGGAGCAT
GCTCCGCGCAGAACTCCGCCTTCTTGGTGCCTTCCAGTCCATACGACGAG
GCCTTGGTGCACGTTGGGTAGCGGCAAGACGTACCCTTTCTATTACTGGT
GGCGACCGCCGCTTCAACGCCTTGGTGCTGGAAGCTGGAGTCATGCTCGT
TGGTCCCGTTCCCGCCGTACGGCGGGTTCGTGGGGCATCCAGGCAAACTC
GTGAATCTCTTCCTGTTGGTGTTGCGACTGTCGCCGTCCGCCCTTTTATT
TTGCTGCTCTCCGTGCACAGTACAAAACTTTACCTCCCGTGTACCATCCA
AGCCAAAACCTTCATCCGTGGCCTGCTTCGTGCATCCTGGGCTGATGCAC
TTTTCAGCCATCCTTCTCTTACGGTTCTTTGGACCAGAGCAAGAAGCAGC
GGCAAGTCGACAAGGAGGGAGTAGAGAAGTCGTCGCACAGCAGTTGTTCG
TTG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig1183:9251..9903+

>mRNA_L-elsbetiae_contig1183.1578.1 ID=mRNA_L-elsbetiae_contig1183.1578.1|Name=mRNA_L-elsbetiae_contig1183.1578.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1170bp|location=Sequence derived from alignment at L-elsbetiae_contig1183:9251..9903+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCCGCACCGCTTGCTCACGACGTCAACCATTCCCTCCGAAGCGTGCT
GGACGCAGAACTCCGCCTTCTTGGTGCCTTCCAGGCCGAATACCGGGTTC
TTGGTGCAAGATGGATGCCCGCACCGCTTGCTGACGACGTTAACCATTCC
CTCCGGAGCATGCTCCGCGCAGAACTCCGCCTTCTTGGTGCCTTCCAGTC
CATACGACGAGGCCTTGGTGCACGTTGGGTAGCGGCAAGACGTACCCTTT
CTATTACTGGTGGCGACCGCCGCTTCAACGCCTTGGTGCTGGAAGCTGGA
GTCATGCTCGTTGGTCCCGTTCCCGCCGTACGGCGGGTTCGTGGGGCATC
CAGGCAAACTCGTGAATCTCTTCCTGTTGGTGTTGCGACTGTCGCCGTCC
GCCCTTTTATTTTGCTGCTCTCCGTGCACAGTACAAAACTTTACCTCCCG
TGTACCATCCAAGCCAAAACCTTCATCCGTGGCCTGCTTCGTGCATCCTG
GGCTGATGCACTTTTCAGCCATCCTTCTCTTACGGTTCTTTGGACCAGAG
CAAGAAGCAGCGGCAAGTCGACAAGGAGGGAGTAGATGCCCGCACCGCTT
GCTCACGACGTCAACCATTCCCTCCGAAGCGTGCTGGACGCAGAACTCCG
CCTTCTTGGTGCCTTCCAGGCCGAATACCGGGTTCTTGGTGCAAGATGGA
TGCCCGCACCGCTTGCTGACGACGTTAACCATTCCCTCCGGAGCATGCTC
CGCGCAGAACTCCGCCTTCTTGGTGCCTTCCAGTCCATACGACGAGGCCT
TGGTGCACGTTGGGTAGCGGCAAGACGTACCCTTTCTATTACTGGTGGCG
ACCGCCGCTTCAACGCCTTGGTGCTGGAAGCTGGAGTCATGCTCGTTGGT
CCCGTTCCCGCCGTACGGCGGGTTCGTGGGGCATCCAGGCAAACTCGTGA
ATCTCTTCCTGTTGGTGTTGCGACTGTCGCCGTCCGCCCTTTTATTTTGC
TGCTCTCCGTGCACAGTACAAAACTTTACCTCCCGTGTACCATCCAAGCC
AAAACCTTCATCCGTGGCCTGCTTCGTGCATCCTGGGCTGATGCACTTTT
CAGCCATCCTTCTCTTACGGTTCTTTGGACCAGAGCAAGAAGCAGCGGCA
AGTCGACAAGGAGGGAGTAG
back to top