mRNA_L-elsbetiae_contig6999.15780.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6999.15780.1
Unique NamemRNA_L-elsbetiae_contig6999.15780.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig6999.15780.1 vs. uniprot
Match: A0A6H5KSJ1_9PHAE (Smr domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KSJ1_9PHAE)

HSP 1 Score: 250 bits (638), Expect = 3.510e-81
Identity = 124/153 (81.05%), Postives = 135/153 (88.24%), Query Frame = 1
Query:    1 REEADYQANLRAQKLEESQKAYKAGQKANAHELSVEGKKHGHLMEQANAKAAEAIIKPQNADRTGVLDLHGLYVAEAAEATKAFLEKQHKARRFREVEIITGAGHHSAGHHAKIRPAVERLISGMDLPYHHPPHNDGAFVVEMYSNQDLVDQL 459
            REEADYQA LR+ KL ESQKAY+AG KANAHELSVEGKKHGHLME AN KAAEAIIKPQN+++TGVLDLHGLYVAEA EAT AFL  Q  A+ FREVE+ITGAGHHS GH AKIRP +E+LIS MDLPYH PPHNDGAF+VEMYSNQDLVDQ+
Sbjct:  139 REEADYQAKLRSSKLAESQKAYQAGHKANAHELSVEGKKHGHLMEAANKKAAEAIIKPQNSEKTGVLDLHGLYVAEATEATAAFLHFQKNAKEFREVEVITGAGHHSQGHQAKIRPTIEKLISSMDLPYHTPPHNDGAFIVEMYSNQDLVDQM 291          
BLAST of mRNA_L-elsbetiae_contig6999.15780.1 vs. uniprot
Match: A0A7S4DAT8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DAT8_HETAK)

HSP 1 Score: 122 bits (305), Expect = 4.950e-32
Identity = 67/143 (46.85%), Postives = 88/143 (61.54%), Query Frame = 1
Query:    1 REEADYQANLRAQKLEESQKAYKAGQKANAHELSVEGKKHGHLMEQANAKAAEAIIKPQNADRTGVLDLHGLYVAEAAEATKAFLEKQHKARRFREVEIITGAGHHSAGHHAKIRPAVERLISGMDLPYHHPPHNDGAFVVEM 429
            R++A+  A  R    + S+KAY  G K  A ELS EGKK G LM++AN++A E ++K Q     GV+DLHGLYV EA E TK FL+K   A    + EIITG GHHS GHHAKI+PA++ +I      +    +N G  VV +
Sbjct:   52 RDQANEMAQKRGDFFDRSKKAYSEGDKKRAKELSDEGKKAGSLMDEANSRAVEELMKTQRHYEQGVIDLHGLYVKEAQEVTKEFLKKVQSAG-LSQAEIITGQGHHSEGHHAKIKPAIKSMIEADKFSFEEKANNPGTLVVNL 193          
BLAST of mRNA_L-elsbetiae_contig6999.15780.1 vs. uniprot
Match: A0A7S3Y4T3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y4T3_HETAK)

HSP 1 Score: 119 bits (297), Expect = 6.340e-30
Identity = 66/143 (46.15%), Postives = 86/143 (60.14%), Query Frame = 1
Query:    1 REEADYQANLRAQKLEESQKAYKAGQKANAHELSVEGKKHGHLMEQANAKAAEAIIKPQNADRTGVLDLHGLYVAEAAEATKAFLEKQHKARRFREVEIITGAGHHSAGHHAKIRPAVERLISGMDLPYHHPPHNDGAFVVEM 429
            R+EA+  A  +    E S++AY  G K  A ELS EGK    LME +N +A E ++K Q +   GV+DLHGLYV EA + T+ FLEK     R  EVEIITG G HS GH AKI+PA+  L+   +L +   P+N G  VV +
Sbjct:  138 RDEANELAKTKNDCFERSKQAYSEGDKKRAKELSDEGKVASKLMEVSNMRAVEELMKTQRSYEKGVIDLHGLYVKEATQVTRDFLEKVKSTGRLSEVEIITGRGRHSEGHRAKIKPAIAALLEASNLDFEEKPNNPGDLVVHL 280          
BLAST of mRNA_L-elsbetiae_contig6999.15780.1 vs. uniprot
Match: A0A066VGX0_TILAU (DUF1771-domain-containing protein n=1 Tax=Tilletiaria anomala (strain ATCC 24038 / CBS 436.72 / UBC 951) TaxID=1037660 RepID=A0A066VGX0_TILAU)

HSP 1 Score: 102 bits (255), Expect = 1.890e-23
Identity = 63/144 (43.75%), Postives = 85/144 (59.03%), Query Frame = 1
Query:    1 REEADYQANLRAQKLEESQKAYKAGQKANAHELSVEGKKHGHLMEQANAKAAEAIIKPQNADRT-GVLDLHGLYVAEAAEATKAFLEKQHKARRFREVEIITGAGHHSAGHHAKIRPAVERLISGMDLPYHHPPHNDGAFVVEM 429
            R  A  + N  A+  +ES +AY AG +A A ELS EG +H   ME  N +AA+ I K  N D     +DLHGLYV EA E T+  + K+ + +   ++ +ITG G+HSA H AKIRPAVE+L+  + L     PHN G  VV +
Sbjct:  142 RANAQSEGNQMAKCFDESHRAYSAGDRARAKELSNEGHQHKERMESLNREAADWIFKANNEDSAPNEIDLHGLYVQEAIERTEVRI-KEAQRQGIPDLRVITGKGNHSAQHVAKIRPAVEKLMQDLHLSAEMDPHNAGVVVVHI 284          
BLAST of mRNA_L-elsbetiae_contig6999.15780.1 vs. uniprot
Match: A0A427Y455_9TREE (Smr domain-containing protein n=1 Tax=Apiotrichum porosum TaxID=105984 RepID=A0A427Y455_9TREE)

HSP 1 Score: 96.3 bits (238), Expect = 3.530e-21
Identity = 64/162 (39.51%), Postives = 92/162 (56.79%), Query Frame = 1
Query:    1 REEADYQANLRAQKLEESQKAYKAGQKANAHELSVEGKKHGHLMEQANAKAAEAIIKPQNADRT-GVLDLHGLYVAEAAEATKAFLEKQHKARRFREVEIITGAGHHSAGHHAKIRPAVERLISGMDLPYHHPPHNDGAFVVEMYS-----NQD---LVDQL 459
            R +A  + +L  Q   +SQ AYK+G  A AH LSVEGK+H    +Q + KAA+ I    N  +  G +DLHGLYV EA E  ++ + +  ++   +E+ +ITG G HS  H AKI+PAVE L+   +L     P N G  VV++       ++D   LVDQ+
Sbjct:  119 RNQARKEGDLAHQCFADSQTAYKSGDGARAHTLSVEGKQHQAKQDQIDDKAADWIFAQNNKTQPHGTIDLHGLYVREAIERVESSISEGQRSG-LQELRVITGKGIHSTNHQAKIKPAVEDLMKKYNLSAELDPRNAGVLVVDLQGRGAGRSRDAGGLVDQM 279          
BLAST of mRNA_L-elsbetiae_contig6999.15780.1 vs. uniprot
Match: A0A1E4U138_PACTA (Smr domain-containing protein n=1 Tax=Pachysolen tannophilus NRRL Y-2460 TaxID=669874 RepID=A0A1E4U138_PACTA)

HSP 1 Score: 95.1 bits (235), Expect = 5.230e-21
Identity = 60/150 (40.00%), Postives = 88/150 (58.67%), Query Frame = 1
Query:   10 ADYQANLRAQKLEESQKAYKAGQKANAHELSVEGKKHGHLMEQANAKAAEAIIKPQNAD-RTGVLDLHGLYVAEAAEATKAFLE---KQHKARRFREVEIITGAGHHSAGHHAKIRPAVERLISGMDLPYHHPPHNDGAFVVEMYSNQDL 447
            AD  A+ R +   +SQ AYKAG K+ AHELS++ KK   + E  NAKAAE +    NAD ++  +DLHGLYV EA    K  +     +H+++    +E+I G G HS    AK++PA+E+L +   L  +   HN G  V+E+ SN ++
Sbjct:   38 ADQAAHRRQELSHKSQNAYKAGDKSQAHELSLQAKKQAQIAEDYNAKAAEYVFVENNADSQSDQIDLHGLYVKEAEYILKQRIIAGINRHESK----LEVIVGKGLHSVNGVAKLKPAIEKLCADAKLKTYIQKHNSGVLVIEL-SNANI 182          
BLAST of mRNA_L-elsbetiae_contig6999.15780.1 vs. uniprot
Match: A0A1E3HN80_9TREE (Smr domain-containing protein n=4 Tax=Cryptococcus TaxID=5206 RepID=A0A1E3HN80_9TREE)

HSP 1 Score: 95.9 bits (237), Expect = 6.860e-21
Identity = 58/131 (44.27%), Postives = 75/131 (57.25%), Query Frame = 1
Query:   52 SQKAYKAGQKANAHELSVEGKKHGHLMEQANAKAAEAIIKPQNADRT-GVLDLHGLYVAEAAEATKAFLEKQHKARRFREVEIITGAGHHSAGHHAKIRPAVERLISGMDLPYHHPPHNDGAFVVEMYSNQ 441
            SQ AYK+G  A AH LSV+GK H    +  + +A+  I    N D   G +DLHGLYV EA E T+A +    + RR  E+ II G G HS G HAKI+PAVE L+   +L  +  P N G  VV++   Q
Sbjct:  155 SQAAYKSGDGAAAHNLSVQGKSHQKTQDDLDDQASAWIFNENNKDSPLGTIDLHGLYVKEAIERTEAAIIDSQRQRR-EELRIIVGKGLHSQGGHAKIKPAVENLMQKYNLSAYVDPSNTGVLVVDLEGKQ 284          
BLAST of mRNA_L-elsbetiae_contig6999.15780.1 vs. uniprot
Match: A0A448ZAJ1_9STRA (Smr domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZAJ1_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 8.150e-20
Identity = 57/132 (43.18%), Postives = 75/132 (56.82%), Query Frame = 1
Query:   52 SQKAYKAGQKANAHELSVEGKKHGHLMEQANAKAAEAIIKPQNADRTGVLDLHGLYVAEAAEATKAFLEKQHKA--RRFREVEIITGAGHHSAGHHAKIRPAVERLISGMDLPYHHPPHNDGAFVVEMYSNQ 441
            SQ+AY+ G K  AH LS E K        AN KAA+ I++PQ+   +G +DLHGL++ EA  AT  FL+   K      + V IITGAGHHS  H A IRP VE+++    L Y    H +GAF + +   Q
Sbjct:   59 SQEAYQKGDKKKAHTLSEEKKDWQKKQNDANIKAAKLILEPQSWQTSGEIDLHGLFLQEATNATLEFLKYWSKKVWSDAKIVLIITGAGHHSENHKAVIRPHVEQILQEQHLDYK-SVHGNGAFEITLKPRQ 189          
BLAST of mRNA_L-elsbetiae_contig6999.15780.1 vs. uniprot
Match: S9R4A3_SCHOY (SMR and DUF1771 domain-containing protein n=1 Tax=Schizosaccharomyces octosporus (strain yFS286) TaxID=483514 RepID=S9R4A3_SCHOY)

HSP 1 Score: 89.0 bits (219), Expect = 5.070e-19
Identity = 57/143 (39.86%), Postives = 83/143 (58.04%), Query Frame = 1
Query:   10 ADYQANLRAQKLEESQKAYKAGQKANAHELSVEGKKHGHLMEQANAKAAEAIIKPQNAD-RTGVLDLHGLYVAEAAEATKAFLEKQHKARRFRE--VEIITGAGHHSAGHHAKIRPAVERLISGMDLPYHHPPHNDGAFVVEM 429
            A  QA  R    +++Q+AY +G KA AHELS  GK+ G+ ME+ N KAA AI   +N+  R   +DLHGLYV EA +A +   ++ H   +  E  + +I G GHHS  H  K++PAV +++   +  Y H P N+G   V +
Sbjct:   11 ASEQAEKRGHFFQKAQQAYASGHKAEAHELSQNGKECGNKMEEYNRKAAYAIYMYKNSQCRPDEIDLHGLYVDEAVQAVR---QRIHNCIQRGEGHLHVIVGQGHHSVNHVEKLKPAVMQMLDQNNFRYSHEP-NEGRIYVSL 149          
BLAST of mRNA_L-elsbetiae_contig6999.15780.1 vs. uniprot
Match: A0A1E3R0G4_9ASCO (Smr domain-containing protein n=1 Tax=Babjeviella inositovora NRRL Y-12698 TaxID=984486 RepID=A0A1E3R0G4_9ASCO)

HSP 1 Score: 88.2 bits (217), Expect = 1.610e-18
Identity = 57/146 (39.04%), Postives = 82/146 (56.16%), Query Frame = 1
Query:    1 REEADYQANLRAQKLEESQKAYKAGQKANAHELSVEGKKHGHLMEQANAKAAEAIIKPQNADRTG-VLDLHGLYVAEAAEATKAFLE--KQHKARRFREVEIITGAGHHSAGHHAKIRPAVERLISGMDLPYHHPPHNDGAFVVEM 429
            R++AD     R+   ++SQ+AYK G KA AH+LS E KK   + +  N +AAE + +  NAD +   +DLHGLYV EA    +  ++   QH   + R   +I G G HSA   AKI+PAVE L    +L ++    N G  V+E+
Sbjct:   32 RKQADQAYQKRSNLSQQSQQAYKLGDKARAHQLSEEAKKQLEIADDFNGQAAEYVFRENNADSSSNEIDLHGLYVKEAVYILRKRIDWASQHNQSQLR---VIVGKGLHSANGVAKIKPAVEELCEQSNLKHYIDHKNAGVLVIEL 174          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6999.15780.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KSJ1_9PHAE3.510e-8181.05Smr domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A7S4DAT8_HETAK4.950e-3246.85Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3Y4T3_HETAK6.340e-3046.15Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A066VGX0_TILAU1.890e-2343.75DUF1771-domain-containing protein n=1 Tax=Tilletia... [more]
A0A427Y455_9TREE3.530e-2139.51Smr domain-containing protein n=1 Tax=Apiotrichum ... [more]
A0A1E4U138_PACTA5.230e-2140.00Smr domain-containing protein n=1 Tax=Pachysolen t... [more]
A0A1E3HN80_9TREE6.860e-2144.27Smr domain-containing protein n=4 Tax=Cryptococcus... [more]
A0A448ZAJ1_9STRA8.150e-2043.18Smr domain-containing protein n=1 Tax=Pseudo-nitzs... [more]
S9R4A3_SCHOY5.070e-1939.86SMR and DUF1771 domain-containing protein n=1 Tax=... [more]
A0A1E3R0G4_9ASCO1.610e-1839.04Smr domain-containing protein n=1 Tax=Babjeviella ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6999contigL-elsbetiae_contig6999:1148..2132 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score258.8
Seed ortholog evalue1.6e-66
Seed eggNOG ortholog2880.D8LQ36
Hectar predicted targeting categoryother localisation
EggNOG free text desc.2',3'-cyclic-nucleotide 3'-phosphodiesterase activity
EggNOG OGsKOG2401@1,KOG2401@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionDomain of unknown function DUF1771
Ec32 orthologEc-26_006280.1
Exons2
Model size462
Cds size462
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816775.6352537-CDS-L-elsbetiae_contig6999:1147..12551622816775.6352537-CDS-L-elsbetiae_contig6999:1147..1255Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6999 1148..1255 +
1691683804.1020036-CDS-L-elsbetiae_contig6999:1147..12551691683804.1020036-CDS-L-elsbetiae_contig6999:1147..1255Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6999 1148..1255 +
1622816775.6463566-CDS-L-elsbetiae_contig6999:1778..21321622816775.6463566-CDS-L-elsbetiae_contig6999:1778..2132Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6999 1779..2132 +
1691683804.113141-CDS-L-elsbetiae_contig6999:1778..21321691683804.113141-CDS-L-elsbetiae_contig6999:1778..2132Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6999 1779..2132 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6999.15780.1prot_L-elsbetiae_contig6999.15780.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6999 1148..2132 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6999.15780.1

>prot_L-elsbetiae_contig6999.15780.1 ID=prot_L-elsbetiae_contig6999.15780.1|Name=mRNA_L-elsbetiae_contig6999.15780.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=154bp
REEADYQANLRAQKLEESQKAYKAGQKANAHELSVEGKKHGHLMEQANAK
AAEAIIKPQNADRTGVLDLHGLYVAEAAEATKAFLEKQHKARRFREVEII
TGAGHHSAGHHAKIRPAVERLISGMDLPYHHPPHNDGAFVVEMYSNQDLV
DQL*
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mRNA from alignment at L-elsbetiae_contig6999:1148..2132+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6999.15780.1 ID=mRNA_L-elsbetiae_contig6999.15780.1|Name=mRNA_L-elsbetiae_contig6999.15780.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=985bp|location=Sequence derived from alignment at L-elsbetiae_contig6999:1148..2132+ (Laminarionema elsbetiae ELsaHSoW15)
CGGGAGGAGGCCGACTACCAGGCGAACCTCCGGGCACAGAAGCTAGAGGA GTCACAGAAGGCCTACAAGGCCGGACAAAAGGCCAACGCCCATGAGCTGT CTGTTGAGGTATGGTTCCTACTAGCGTGAGCCGCTTTCATTGTCTCGCTT CTGCCGCAGCAGGACCATTCGAAAGCACCCCATAAATATTTGCGTTTCCT GTTGCGTTTCTGATGCGTTAAAAGCTATCCCTGGAGTTTATACTGTTGTG GGCAGCAAGCACTGCGGTTTCCGCTGTCGTCTGTGGAGGATTGTTGCGTA CTTGAGCCCGATGGGAATCGTATCGTCACGAAACCTCGGGAGGGCACCAA CCCTCAATAAATTTCTCCTGGCGTCGGCTGTCAATTGTTTCGGCGGCGTC GACGAGGGAATCCTTCGTAAATTTATCTCCAAACACATGCATACGTGCCT GATACAGAATACGCAACTTGTTATTGGCAGCTGTTCCCGGCGGTGTTTGT CCCCGCAGCGCGCTACAGCACCCCCACCCGGCGTGTCCACGATCGCCAAC TTGTCCGATTTCCTCTCTCTCCGCCGTCCAATGTCTTTGCAACGCCCCGA CACACCAACATACGTGCCGTGTGCGCCGCAGGGGAAGAAACACGGTCACC TGATGGAGCAGGCAAACGCGAAGGCGGCGGAGGCCATCATCAAACCCCAA AATGCCGACAGGACCGGCGTGCTCGACCTGCACGGGCTGTACGTGGCCGA GGCAGCCGAGGCGACGAAGGCCTTCCTCGAGAAGCAGCACAAGGCCAGGC GCTTCAGGGAGGTGGAGATCATCACCGGCGCCGGGCACCACAGCGCCGGG CACCACGCCAAGATCCGGCCCGCCGTCGAGAGGCTCATCAGCGGCATGGA CCTGCCGTATCACCACCCTCCCCACAACGACGGCGCCTTCGTCGTGGAGA TGTACTCCAACCAAGACCTTGTCGACCAACTGTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6999:1148..2132+

>mRNA_L-elsbetiae_contig6999.15780.1 ID=mRNA_L-elsbetiae_contig6999.15780.1|Name=mRNA_L-elsbetiae_contig6999.15780.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=924bp|location=Sequence derived from alignment at L-elsbetiae_contig6999:1148..2132+ (Laminarionema elsbetiae ELsaHSoW15)
CGGGAGGAGGCCGACTACCAGGCGAACCTCCGGGCACAGAAGCTAGAGGA
GTCACAGAAGGCCTACAAGGCCGGACAAAAGGCCAACGCCCATGAGCTGT
CTGTTGAGCGGGAGGAGGCCGACTACCAGGCGAACCTCCGGGCACAGAAG
CTAGAGGAGTCACAGAAGGCCTACAAGGCCGGACAAAAGGCCAACGCCCA
TGAGCTGTCTGTTGAGGGGAAGAAACACGGTCACCTGATGGAGCAGGCAA
ACGCGAAGGCGGCGGAGGCCATCATCAAACCCCAAAATGCCGACAGGACC
GGCGTGCTCGACCTGCACGGGCTGTACGTGGCCGAGGCAGCCGAGGCGAC
GAAGGCCTTCCTCGAGAAGCAGCACAAGGCCAGGCGCTTCAGGGAGGTGG
AGATCATCACCGGCGCCGGGCACCACAGCGCCGGGCACCACGCCAAGATC
CGGCCCGCCGTCGAGAGGCTCATCAGCGGCATGGACCTGCCGTATCACCA
CCCTCCCCACAACGACGGCGCCTTCGTCGTGGAGATGTACTCCAACCAAG
ACCTTGTCGACCAACTGTAAGGGAAGAAACACGGTCACCTGATGGAGCAG
GCAAACGCGAAGGCGGCGGAGGCCATCATCAAACCCCAAAATGCCGACAG
GACCGGCGTGCTCGACCTGCACGGGCTGTACGTGGCCGAGGCAGCCGAGG
CGACGAAGGCCTTCCTCGAGAAGCAGCACAAGGCCAGGCGCTTCAGGGAG
GTGGAGATCATCACCGGCGCCGGGCACCACAGCGCCGGGCACCACGCCAA
GATCCGGCCCGCCGTCGAGAGGCTCATCAGCGGCATGGACCTGCCGTATC
ACCACCCTCCCCACAACGACGGCGCCTTCGTCGTGGAGATGTACTCCAAC
CAAGACCTTGTCGACCAACTGTAA
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