mRNA_L-elsbetiae_contig6997.15779.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6997.15779.1
Unique NamemRNA_L-elsbetiae_contig6997.15779.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6997.15779.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6997contigL-elsbetiae_contig6997:8704..9200 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size497
Cds size318
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6997.15779.1prot_L-elsbetiae_contig6997.15779.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6997 8858..9175 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816775.577099-UTR-L-elsbetiae_contig6997:8703..88571622816775.577099-UTR-L-elsbetiae_contig6997:8703..8857Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6997 8704..8857 +
1691683804.0699058-UTR-L-elsbetiae_contig6997:8703..88571691683804.0699058-UTR-L-elsbetiae_contig6997:8703..8857Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6997 8704..8857 +
1622816775.6046386-UTR-L-elsbetiae_contig6997:9175..92001622816775.6046386-UTR-L-elsbetiae_contig6997:9175..9200Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6997 9176..9200 +
1691683804.0916405-UTR-L-elsbetiae_contig6997:9175..92001691683804.0916405-UTR-L-elsbetiae_contig6997:9175..9200Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6997 9176..9200 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816775.5912135-CDS-L-elsbetiae_contig6997:8857..91751622816775.5912135-CDS-L-elsbetiae_contig6997:8857..9175Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6997 8858..9175 +
1691683804.0807717-CDS-L-elsbetiae_contig6997:8857..91751691683804.0807717-CDS-L-elsbetiae_contig6997:8857..9175Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6997 8858..9175 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6997.15779.1

>prot_L-elsbetiae_contig6997.15779.1 ID=prot_L-elsbetiae_contig6997.15779.1|Name=mRNA_L-elsbetiae_contig6997.15779.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=106bp
MISYRCRFLETVAKHNFVCVEPRLYTCMPIPSKTKRRRIVVHFCSHHIMS
NQDSAVRLVPLGLRPTYDRAPKIRCLPATRAGASLPPRHIKVRGQEFTLP
HGTIV*
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mRNA from alignment at L-elsbetiae_contig6997:8704..9200+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6997.15779.1 ID=mRNA_L-elsbetiae_contig6997.15779.1|Name=mRNA_L-elsbetiae_contig6997.15779.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=497bp|location=Sequence derived from alignment at L-elsbetiae_contig6997:8704..9200+ (Laminarionema elsbetiae ELsaHSoW15)
AACTACCTCTCCACATAGACTTCACCCCCGTGCGTGCGAAAGTGCGGGAC
TCGTAGTCGCGAAAAAGTGCATTGCTGATCGTGGTTTCCACAAGAATAGC
AAACGTCAGTTGTTTCGACTTTCCGATCTGTTCCGAAAGCCCCGCAAGTC
GGCCATGATATCCTACCGGTGTCGGTTTCTCGAAACCGTGGCAAAACACA
ATTTTGTGTGTGTAGAGCCTCGTCTATATACGTGCATGCCGATCCCCTCC
AAAACAAAACGAAGGAGGATTGTCGTTCATTTTTGCAGCCATCACATAAT
GTCAAACCAAGATTCAGCTGTTCGTCTTGTTCCTCTCGGCTTGCGGCCCA
CGTACGATAGGGCACCCAAAATCAGATGCTTGCCCGCCACTCGCGCCGGA
GCCTCCCTTCCCCCCAGGCACATTAAAGTGCGCGGCCAAGAGTTCACACT
TCCACACGGCACAATAGTGTGACACCTCTATGGACATATATAAGCGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6997:8704..9200+

>mRNA_L-elsbetiae_contig6997.15779.1 ID=mRNA_L-elsbetiae_contig6997.15779.1|Name=mRNA_L-elsbetiae_contig6997.15779.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=636bp|location=Sequence derived from alignment at L-elsbetiae_contig6997:8704..9200+ (Laminarionema elsbetiae ELsaHSoW15)
ATGATATCCTACCGGTGTCGGTTTCTCGAAACCGTGGCAAAACACAATTT
TGTGTGTGTAGAGCCTCGTCTATATACGTGCATGCCGATCCCCTCCAAAA
CAAAACGAAGGAGGATTGTCGTTCATTTTTGCAGCCATCACATAATGTCA
AACCAAGATTCAGCTGTTCGTCTTGTTCCTCTCGGCTTGCGGCCCACGTA
CGATAGGGCACCCAAAATCAGATGCTTGCCCGCCACTCGCGCCGGAGCCT
CCCTTCCCCCCAGGCACATTAAAGTGCGCGGCCAAGAGTTCACACTTCCA
CACGGCACAATAGTGTGAATGATATCCTACCGGTGTCGGTTTCTCGAAAC
CGTGGCAAAACACAATTTTGTGTGTGTAGAGCCTCGTCTATATACGTGCA
TGCCGATCCCCTCCAAAACAAAACGAAGGAGGATTGTCGTTCATTTTTGC
AGCCATCACATAATGTCAAACCAAGATTCAGCTGTTCGTCTTGTTCCTCT
CGGCTTGCGGCCCACGTACGATAGGGCACCCAAAATCAGATGCTTGCCCG
CCACTCGCGCCGGAGCCTCCCTTCCCCCCAGGCACATTAAAGTGCGCGGC
CAAGAGTTCACACTTCCACACGGCACAATAGTGTGA
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