mRNA_L-elsbetiae_contig6987.15770.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6987.15770.1
Unique NamemRNA_L-elsbetiae_contig6987.15770.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6987.15770.1 vs. uniprot
Match: A0A6H5JFU4_9PHAE (Galactinol--sucrose galactosyltransferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFU4_9PHAE)

HSP 1 Score: 167 bits (424), Expect = 4.990e-44
Identity = 95/147 (64.63%), Postives = 111/147 (75.51%), Query Frame = 1 
Query:    1 RSEVAAVSKVLTFEVVSAGKGEWASIGLADMFNAGGAVASETLSQEGGSRAEAELMVKGSGRFLALCSLRPAAVLFDGAPLHAFSHRRTAEGVPFLEIELPEGYSGKPRPLVVQWDKDSRAYSGGSXXXXXXXXXXXGAIGLGRPNG 441
            + EVAA+SKVLTF+ V+  +G+WASIGL DMFNAGGA+ SE LS +GG RA+AE+ VKGSGRFLALCSLRPAAVLFDG  +  FSH R +EGVP LE+ LP GY+GKPR LVVQWDKDSR  +GGS           G  G GRP+G
Sbjct:  838 KCEVAAISKVLTFDTVAGTEGKWASIGLVDMFNAGGAIVSEKLSYQGG-RAQAEMTVKGSGRFLALCSLRPAAVLFDGKSV-PFSHSRDSEGVPSLELALPTGYTGKPRSLVVQWDKDSRL-AGGS-----------GVNGSGRPHG 970
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BLAST of mRNA_L-elsbetiae_contig6987.15770.1 vs. uniprot
Match: A0A836CJ91_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ91_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 1.250e-9
Identity = 39/73 (53.42%), Postives = 50/73 (68.49%), Query Frame = 1 
Query:    7 EVAAVSKVLTFEVVSAGKGEWASIGLADMFNAGGAVASETLSQ-EGGSRAEAELMVKGSGRFLALCSLRPAAV 222
            E+A++S+V TF      K  W+SIGL D+FNAGGA+ SE +   EGG R  AE+++ GSG FLALCSL P  V
Sbjct:  418 ELASISRVHTFSFSQGRKLLWSSIGLPDLFNAGGAIMSEAMEVIEGGRRVSAEIVLHGSGLFLALCSLHPTQV 490
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BLAST of mRNA_L-elsbetiae_contig6987.15770.1 vs. uniprot
Match: D7FLK6_ECTSI (Galactinol--sucrose galactosyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLK6_ECTSI)

HSP 1 Score: 65.9 bits (159), Expect = 7.940e-9
Identity = 35/55 (63.64%), Postives = 46/55 (83.64%), Query Frame = 1 
Query:    1 RSEVAAVSKVLTFEVVSAGKGEWASIGLADMFNAGGAVASETLSQEGGSRAEAEL 165
            + EVAA+SKVLTF+ V+  +G+WASIGL DMFNAGGA+ SE LS +GG RA+A++
Sbjct:  493 KCEVAAISKVLTFDTVAGTEGKWASIGLVDMFNAGGAIVSEKLSYQGG-RAQADM 546
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BLAST of mRNA_L-elsbetiae_contig6987.15770.1 vs. uniprot
Match: A0A835YGP5_9STRA (Galactinol--sucrose galactosyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGP5_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 9.290e-9
Identity = 43/87 (49.43%), Postives = 57/87 (65.52%), Query Frame = 1 
Query:    7 EVAAVSKVLTFEVVSAGKG--EWASIGLADMFNAGGAVASETLSQ-EGGSRAEAELMVKGSGRFLALCSLRPAAVLFDGAPLHAFSH 258
            E+AA+++V T      GK    WAS+GLADMFNAGGAV +E  S  + G+     + +KG+GRFLA CS+RP +V  DG  L AF+H
Sbjct:  995 ELAAIARVTTLP----GKAGVRWASVGLADMFNAGGAVLAERSSAAQNGAATTLSIDLKGAGRFLAHCSVRPTSVTLDGEEL-AFTH 1076
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6987.15770.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JFU4_9PHAE4.990e-4464.63Galactinol--sucrose galactosyltransferase n=1 Tax=... [more]
A0A836CJ91_9STRA1.250e-953.42Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7FLK6_ECTSI7.940e-963.64Galactinol--sucrose galactosyltransferase n=1 Tax=... [more]
A0A835YGP5_9STRA9.290e-949.43Galactinol--sucrose galactosyltransferase n=1 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6987contigL-elsbetiae_contig6987:3888..7731 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size701
Cds size366
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6987.15770.1prot_L-elsbetiae_contig6987.15770.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6987 4133..5743 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816774.6433234-UTR-L-elsbetiae_contig6987:3887..41321622816774.6433234-UTR-L-elsbetiae_contig6987:3887..4132Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6987 3888..4132 -
1691683803.2993238-UTR-L-elsbetiae_contig6987:3887..41321691683803.2993238-UTR-L-elsbetiae_contig6987:3887..4132Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6987 3888..4132 -
1622816774.6756902-UTR-L-elsbetiae_contig6987:5743..57731622816774.6756902-UTR-L-elsbetiae_contig6987:5743..5773Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6987 5744..5773 -
1691683803.3529928-UTR-L-elsbetiae_contig6987:5743..57731691683803.3529928-UTR-L-elsbetiae_contig6987:5743..5773Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6987 5744..5773 -
1622816774.6890187-UTR-L-elsbetiae_contig6987:7671..77311622816774.6890187-UTR-L-elsbetiae_contig6987:7671..7731Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6987 7672..7731 -
1691683803.3645978-UTR-L-elsbetiae_contig6987:7671..77311691683803.3645978-UTR-L-elsbetiae_contig6987:7671..7731Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6987 7672..7731 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816774.6537733-CDS-L-elsbetiae_contig6987:4132..44201622816774.6537733-CDS-L-elsbetiae_contig6987:4132..4420Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6987 4133..4420 -
1691683803.3186867-CDS-L-elsbetiae_contig6987:4132..44201691683803.3186867-CDS-L-elsbetiae_contig6987:4132..4420Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6987 4133..4420 -
1622816774.6651511-CDS-L-elsbetiae_contig6987:5665..57431622816774.6651511-CDS-L-elsbetiae_contig6987:5665..5743Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6987 5666..5743 -
1691683803.3376174-CDS-L-elsbetiae_contig6987:5665..57431691683803.3376174-CDS-L-elsbetiae_contig6987:5665..5743Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6987 5666..5743 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6987.15770.1

>prot_L-elsbetiae_contig6987.15770.1 ID=prot_L-elsbetiae_contig6987.15770.1|Name=mRNA_L-elsbetiae_contig6987.15770.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=122bp
MFNAGGAVASETLSQEGGSRAEAELMVKGSGRFLALCSLRPAAVLFDGAP
LHAFSHRRTAEGVPFLEIELPEGYSGKPRPLVVQWDKDSRAYSGGSSGGS
SGGDGAGGAIGLGRPNGGDLP*
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mRNA from alignment at L-elsbetiae_contig6987:3888..7731-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6987.15770.1 ID=mRNA_L-elsbetiae_contig6987.15770.1|Name=mRNA_L-elsbetiae_contig6987.15770.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3844bp|location=Sequence derived from alignment at L-elsbetiae_contig6987:3888..7731- (Laminarionema elsbetiae ELsaHSoW15)
AGGTCTGAGGTCGCGGCCGTCAGCAAGGTTCTGACGTTCGAAGTCGTCTC
CGCCGGCAAGGTTAGATGGAGAACGATGCGCCCTTGTCCGATAAGCGCGC
TCTCGCGCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAT
TTTTTTTTTTTTTTTTTTTTTTGTTTTTGTTTTTTTTTTCTGTTTTTTTT
GTTGAATTTTTTNNNNNNNNNNCCGCGCTCGGCCCTTCCCCGAGGGGCGC
GCTCTCGCGCCTTTTTTTTTTTTTTTTTTTTTTTTGGTAAATATGTAGCG
AGGAAAATTATTTACCAAACCAGTGAGTGAGTACCCTTCGCAGGTTTTAC
TGGAAGAAATCATATAGGATAAAGTATTGAAACGGCTAATTTTATGGGTG
GTCGGTTAGGGTTAGGGTTAGAGTCACGGAACCCCTGTTTACCGTATGTA
GGTGACACAAGATACCACACCCCCTGGGCCGAATTTTAGAGCTCCTTTAC
TCCGTAACGAAGAAGGTGCCAGCACCGAACGGCACATTTTCGGACAGCCC
TCGCCTAGATCTTTCCAACGCACCCCCTTTCGGCATTGACGCTCTTCTTG
CTGGAGAGGAATCGAGCTTTGAAAATCTGTCCAGGGGGTGTGGTATCTTG
TGTCACCTACGGTATTACTCCTATTTCCTATTTAGACGGAATTCTTCACG
AAGGCGGAGTCCTATCAAACTTGTGTTTTTTTATTTTTTATTTTTTTGAT
ATTGGTATGTAGTTATTCTACTGAACGCCAGCAGTCTACGTCCATCCTAC
GAATAAGTATGACGAGGGGGGTGGCTGCTGTAGACACACTGGCTCTCGAT
CACCACACCACGACCGGCTATATGTACCGGCTCGATAAATCTTAAGCAAA
ATGTTACCGTAAAATCCATATCGTAATAAAACATAATGTTACCGTGGTTC
ATAATTTGTTTTTGTTGTTTTGTTTGTCTGGAACCCCGCATTATTTTTTC
CGTAAGCGGGCCATCCGCTTTTTTTTCAGTAGTCTACGCGGGGTTTTTGT
CTTAAGCTAATATATGGGATAAAGTATGGAAACCGTTTGGGAGGGTCGGT
GGTTGGGGTTAGGGTTAGGGTTAGGGTTAGAGTTAGTAGTATAAAATTAA
TTTCTGCGTAGGCGGTCCTTTTTTTTATTTAGGCTACATATGTATGTACG
AGCTGCGGGGCCCCAGCGTGAGGGCCTGGGAGCTTGGGAATTCCAACTTT
CCATTTTCTCGTAAATATGTGTAAGGCCAGCCGTGAACACCCTGCTCTAT
TCTCTTTTCAAAATACCAGTGTGGTGTGTGTTGGTATCTATCACAACCCG
CGCCCTGTCTTTTAAAAGTATAGAGCATTAGGTAGGTTGGAAAATCGTTG
GCCGCATGTGTACCTTCTTCGGAGCATGACATCAGGCGTGGAGTCTATAG
ATCGGAGTCTTCGGGCTTAGCCGCCCTTTTCGAGCGCCCATCGCAAGCGT
CAGCGATCGACACTTGTGTACCGGGAAAAACTCCATCAACTTCAATCAAC
ATGCATATGATCGTAGCCAACGGCGGGCATCTACCCGCCCAAATACTTGT
TGGCCGACCTCGCAAATCTTTGCAGGGGAGATGTTGAACTCTTCTGGTAC
ATTTTAGGTTGTTTTTCTGCTCGCTTCCGACGCCAAGTATTAGTCACCGT
GTATGGTATGGAATAATATTACCGTTTGAAACCCCATACATATTGAGTCC
TTGCTCTAGTGTGGGGTAGGTTCCATCTTTGATCCATTGTTTTGTTTGCA
TAAAATGCTCTGACCCCGTGACCGGACAACAACAAAAAGCAGCGGTGCAT
GCTCTCAATCAAGTACATAGGTTTTCTTCTTTTGTTTTGTTATCTCCCCC
CCCGTCGGGTGGTTGTTGTTGTGTGGGTGGGGGGGGGGGGGGGGGGGGGG
GGGGGCAGGGTGAGTGGGCAAGCATTGGCTTGGCGGACATGTTCAACGCT
GGGGGCGCCGTGGCCTCGGAAACGCTGTCCCAGGAAGGGGGCAGCAGAGC
GGAAGCGGAATTAATGGTGCGTTTGTTTTTGTTTTGTTTGCTAACGTTCT
TGCGCCGTTACAGCGTAGTCACAACACATTTCAAAGTCCACCCTGCTGCT
GCTGCTGTTGCAACAACAACAACGCGGGGTGTGTGGTGTGGTTACCGTAG
GTGACACAAGATACCACACCCCCTGGACCAAATTTTAGAGCCCCCTTACT
CCGTAACGAAGAAGATGTCAGCACCAAACGACAGATTTTCGGACAGCCCT
CGACTAGATCTTTCCAATGCCACCTCTTTCGGCACTGGCACTCTTCTTGC
TGAGGAGGAACCGAGCTTTAAAAATCTGTCCAGGGGGTGTGGTATCTTGT
GTCACCTACGGCATGTAAAGGAAGAACAAGACAGTTATGAGGCGGCGGCG
GGGGGGGCACTTGGTAACCACACGTCTGTTGTTGTTTGTAGTTGTTTTTT
TTTCTGCACTGCTTAGGCTGTTTTTTTTTTGTTTTGTTTTTTTGTCTGCC
CATTATTGGATTTTGTCGTCTGCCCCTCTGGCCCCCATCCTCCACTTCTA
CTCTAGCCATACGACCCAACCGGGGTCACATAGGAGGGGGTATGAACATA
CGAGAGTAAATAGGCGTGGTTTTTTGCGTTGGCGTGCGCGTCGGGCCCAG
CCAGATGAAGCACGCTCGCCTTGTTGTATTCGAGGGCGGTTGATTCGGGT
ACGCAGCGTCCAAGAGAGCTGTTCAGACGCGATGCGAAGGGTCCTTGTGT
TTGTTTGTCCGCCTATTTTCAAAGCGACAAGAAGCTTTAGCCGGAGAGCA
CACCAACCACCCCATCGCCCGCGCGTAGATGTTTCTTTACTCCCAACCGC
CACTATACACGTTCACGTGATCGCGCGCGCGCGCGCGCACACACACACAC
ACACGCATTGTTGCATGTTTTGCCCGCTGAAAGCCGACTTCCTTTCATTG
GTCAGCCTGTTAGCGCGGCTGATGCTACATGAACTAAGACAATACACCTA
CACATATAGAGGTATATACTAGGAGTATGTATCTGCGGGCCCATTTTATT
TCTTTTTCATTTTTCAGTGTACCCTTTTTTTAGGGCATAAGTTATCCTGT
GACCACCCACGGGAATCGACCGCGTCAGGTGTTGGATTAGTACGGACTCC
ATGGAAGTGTACTGGATAGAGAGATCGGAACGGGCTTTAATGTGAAGACA
ACGGACAACAGCAACACATCTATGATGCACACAAACACGCGCGCGCGCAC
GCACACCTCAGGTGAAGGGAAGCGGCCGGTTCCTAGCGCTGTGCTCCCTC
CGACCAGCGGCCGTCCTCTTCGACGGGGCTCCGCTGCATGCATTTTCCCA
CCGCCGGACAGCCGAGGGGGTCCCGTTCCTTGAGATCGAGCTCCCGGAGG
GATATTCGGGAAAGCCCCGACCCTTGGTGGTGCAGTGGGACAAGGATTCG
AGAGCGTACAGCGGCGGAAGCAGCGGCGGAAGCAGCGGCGGTGACGGCGC
CGGCGGCGCGATTGGATTGGGTCGACCAAACGGCGGCGACTTGCCTTGAT
CGGGGGTGTCCAGGTTTTGGAGTCCGGTGTTAGTGTTGGTGTTGGCGCAG
CGGGGGGCGCGGGGCCGGAGCGCGCCGGTGTGCTGTGGGTGTGTCAGAAA
GAGACATTATCATGGGGGGAAAGAAATGATACGCCATTATATCCTAGCTG
CCTATACCTAGGAAAACTCAGGGGATTGTTTATTTTCGTAGCGGGGAGAG
GAAAGCTTTAGATATGCCTGGTGAGAGAGAACGGGTGCGGGTGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6987:3888..7731-

>mRNA_L-elsbetiae_contig6987.15770.1 ID=mRNA_L-elsbetiae_contig6987.15770.1|Name=mRNA_L-elsbetiae_contig6987.15770.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=732bp|location=Sequence derived from alignment at L-elsbetiae_contig6987:3888..7731- (Laminarionema elsbetiae ELsaHSoW15)
ATGTTCAACGCTGGGGGCGCCGTGGCCTCGGAAACGCTGTCCCAGGAAGG
GGGCAGCAGAGCGGAAGCGGAATTAATGATGTTCAACGCTGGGGGCGCCG
TGGCCTCGGAAACGCTGTCCCAGGAAGGGGGCAGCAGAGCGGAAGCGGAA
TTAATGGTGAAGGGAAGCGGCCGGTTCCTAGCGCTGTGCTCCCTCCGACC
AGCGGCCGTCCTCTTCGACGGGGCTCCGCTGCATGCATTTTCCCACCGCC
GGACAGCCGAGGGGGTCCCGTTCCTTGAGATCGAGCTCCCGGAGGGATAT
TCGGGAAAGCCCCGACCCTTGGTGGTGCAGTGGGACAAGGATTCGAGAGC
GTACAGCGGCGGAAGCAGCGGCGGAAGCAGCGGCGGTGACGGCGCCGGCG
GCGCGATTGGATTGGGTCGACCAAACGGCGGCGACTTGCCTTGAGTGAAG
GGAAGCGGCCGGTTCCTAGCGCTGTGCTCCCTCCGACCAGCGGCCGTCCT
CTTCGACGGGGCTCCGCTGCATGCATTTTCCCACCGCCGGACAGCCGAGG
GGGTCCCGTTCCTTGAGATCGAGCTCCCGGAGGGATATTCGGGAAAGCCC
CGACCCTTGGTGGTGCAGTGGGACAAGGATTCGAGAGCGTACAGCGGCGG
AAGCAGCGGCGGAAGCAGCGGCGGTGACGGCGCCGGCGGCGCGATTGGAT
TGGGTCGACCAAACGGCGGCGACTTGCCTTGA
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