mRNA_L-elsbetiae_contig6985.15767.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6985.15767.1
Unique NamemRNA_L-elsbetiae_contig6985.15767.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig6985.15767.1 vs. uniprot
Match: A0A6H5KT75_9PHAE (PAO protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KT75_9PHAE)

HSP 1 Score: 567 bits (1461), Expect = 5.250e-190
Identity = 344/582 (59.11%), Postives = 371/582 (63.75%), Query Frame = 1 
Query:    1 KQVSESNPWIETTPSVSLFCGGERVAAAEAADTHEAFCGLMGRVRVLAQQCDDADVPAGDAIEKLLLDEPFCSLSVRELSRLRLRVASLGLWHGCDMKDMQLRSLEFEDKPFHGGQGVYGDFPGPHCVVEGGVERIAEAVASPQVRECLRLHAPVDRVAITNPDKKAXXXXXXXXXXXXXXGDEQVGGAVHVSIKREGATAAVMGGRGAGVEGGGGGELVRADAVIVTVPLSVLQEGAVEFDPPLREETASALSRLGMGTYEKIIMEFEEPFWPADTPFIGCCC----PQPSP---------LVAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPAIPIFLENYLWSKGVPVLTAAVTGERARLVSAAXXXXXXXXXXXXXXXXXXXXXXDGDSWRASHAREMYRRLIKPALVEGLGRRGEELPEPVSVFVTSWAEEPLQRGSYSYFPLGARDDDIHRAGQGATCGAP--GAEPGAEG-SERVFFAGEATVPGLEGSMHGAYLSGVRAVEDVAYASGLPL 1698
            KQVSESNPWIE TPSVSLF GG+R   AE A   EAF  LMGRVR +AQ CDDA+ PA DAIEKLLLDEPF S S+ EL+RLR+RV  L LWHGCD++DMQLRSLEFE+KPFHGGQGVYGDFPGPHCVVEGGVERIAE VASPQVRECLRL+A V RVAI + +K A                   G  V V + ++     V+G             LVRA+AVIV VPLSVLQEG VEFDPPL EET+SALSRL MG YEKI+MEF EPFWPADTPFIGCCC    P PSP            P                                                                  XXXXXXXXXXXXXX         L   P+FLEN+LWSKGVPVLTAAVTGERAR+VSAA                        + WRASHAREMYRRLIKPALVEGLG  GE+LPEPVSVFVTSW +EP QRGSYS+FPLGARDDDIH AG+GA  G P   AE GA G SERVFFAGEATVPGLEGSMHGAYLSGVRA EDVAYA GLPL
Sbjct:   42 KQVSESNPWIEATPSVSLFYGGKRAGEAETAANDEAFSELMGRVRTMAQGCDDAEAPARDAIEKLLLDEPFRSFSMPELARLRMRVLMLALWHGCDVQDMQLRSLEFENKPFHGGQGVYGDFPGPHCVVEGGVERIAEVVASPQVRECLRLNARVSRVAIVDAEKAAAAAAIPANKTSGGPAAVSKGEHVQVVVHKQ-----VVGXXXXXXXXXXXXXLVRAEAVIVAVPLSVLQEGTVEFDPPLSEETSSALSRLSMGNYEKIMMEFAEPFWPADTPFIGCCCGYPRPPPSPPSLHTAPPAAPVPTAPVSATADGGSYSPAPPAPRPRTTVSGSARMTADGGGVAPPSSSGATNPASLVAAENGHTPALAAXXXXXXXXXXXXXXESAVVGAPPLSVSPVFLENHLWSKGVPVLTAAVTGERARMVSAAARTMARGEGAGNSGAAE-------EGWRASHAREMYRRLIKPALVEGLGGTGEDLPEPVSVFVTSWGQEPFQRGSYSFFPLGARDDDIHTAGRGAAFGPPRGAAEGGAGGGSERVFFAGEATVPGLEGSMHGAYLSGVRAAEDVAYAFGLPL 611
[Close]
BLAST of mRNA_L-elsbetiae_contig6985.15767.1 vs. uniprot
Match: UPI001A951060 (FAD-dependent oxidoreductase n=1 Tax=Mycolicibacterium sp. S2-37 TaxID=2810297 RepID=UPI001A951060)

HSP 1 Score: 78.2 bits (191), Expect = 2.290e-11
Identity = 35/62 (56.45%), Postives = 43/62 (69.35%), Query Frame = 1 
Query:  658 VRADAVIVTVPLSVLQEGAVEFDPPLREETASALSRLGMGTYEKIIMEFEEPFWPADTPFIG 843
            V AD VIVTVPL VL+ GA+ FDPPL +    A+ RLG G   K+++ F+EPFWP D P IG
Sbjct:  257 VTADRVIVTVPLGVLKAGAIAFDPPLPDAKRGAIERLGFGLLNKVVVTFDEPFWPRDRPMIG 318
[Close]
BLAST of mRNA_L-elsbetiae_contig6985.15767.1 vs. uniprot
Match: A0A117IK81_9MYCO (Monoamine oxidase n=1 Tax=Mycolicibacterium novocastrense TaxID=59813 RepID=A0A117IK81_9MYCO)

HSP 1 Score: 71.2 bits (173), Expect = 2.180e-10
Identity = 32/66 (48.48%), Postives = 42/66 (63.64%), Query Frame = 1 
Query:  658 VRADAVIVTVPLSVLQEGAVEFDPPLREETASALSRLGMGTYEKIIMEFEEPFWPADTPFIGCCCP 855
            + AD VIVTVPL VL+  A+ FDPPL +    A+ RLG G   K+++ F++PFWP   P IG   P
Sbjct:    1 MTADRVIVTVPLGVLKADAIAFDPPLPQPKRDAIGRLGFGLLNKVVLAFDQPFWPRTRPMIGLVGP 66
[Close]
BLAST of mRNA_L-elsbetiae_contig6985.15767.1 vs. uniprot
Match: UPI001C84CE22 (FAD-dependent oxidoreductase n=1 Tax=Mycobacterium sp. Y57 TaxID=2796469 RepID=UPI001C84CE22)

HSP 1 Score: 74.7 bits (182), Expect = 2.560e-10
Identity = 31/63 (49.21%), Postives = 43/63 (68.25%), Query Frame = 1 
Query:  655 LVRADAVIVTVPLSVLQEGAVEFDPPLREETASALSRLGMGTYEKIIMEFEEPFWPADTPFIG 843
            +V  D  IVTVPL VL+ G +EFDPPL +    A+ RLG G  +K+++ F+EPFWP+D   +G
Sbjct:  230 VVTGDRAIVTVPLGVLKAGTIEFDPPLSDAKRGAIERLGFGVLDKVVLTFDEPFWPSDPDVLG 292
[Close]
BLAST of mRNA_L-elsbetiae_contig6985.15767.1 vs. uniprot
Match: A0A3M8L319_9MICO (FAD-dependent oxidoreductase n=2 Tax=Cryobacterium tepidiphilum TaxID=2486026 RepID=A0A3M8L319_9MICO)

HSP 1 Score: 75.1 bits (183), Expect = 2.670e-10
Identity = 34/60 (56.67%), Postives = 44/60 (73.33%), Query Frame = 1 
Query:  649 GELVRADAVIVTVPLSVLQEGAVEFDPPLREETASALSRLGMGTYEKIIMEFEEPFWPAD 828
            GE + AD VI+TVPL VLQ GA+EFDPPL     +A+ +LGMG  EK+++ F+EPFW  D
Sbjct:  351 GESLSADRVIITVPLGVLQTGAIEFDPPLPFSHRAAIGQLGMGLREKLVLRFDEPFWSTD 410
[Close]
BLAST of mRNA_L-elsbetiae_contig6985.15767.1 vs. uniprot
Match: A0A3M2AGZ2_9CHLR (FAD-binding protein n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A3M2AGZ2_9CHLR)

HSP 1 Score: 73.9 bits (180), Expect = 5.430e-10
Identity = 45/117 (38.46%), Postives = 63/117 (53.85%), Query Frame = 1 
Query: 1336 ASHAREMYRR----LIKPALVEGLGRRGEELPEPVSVFVTSWAEEPLQRGSYSYFPLGARDDDIHRAGQGATCGAPGAEPGAEGSERVFFAGEATVPGLEGSMHGAYLSGVRAVEDV 1674
            A  AR+M +R    ++  AL    G  G  +PEPV +  + WA +P   GSYSY P+GAR  D    G+               ++++FFAGEAT P    ++HGAYLSG+RA  +V
Sbjct:  351 ADAARQMEQRSDEEIVAHALEVLRGAFGVNIPEPVGMVQSRWAADPFTLGSYSYTPVGARRADRVILGESV-------------AKKLFFAGEATHPDYPATVHGAYLSGIRAAREV 454
[Close]
BLAST of mRNA_L-elsbetiae_contig6985.15767.1 vs. uniprot
Match: A0A061S6Q5_9CHLO (Lysine-specific histone demethylase 1 (Fragment) n=2 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061S6Q5_9CHLO)

HSP 1 Score: 74.7 bits (182), Expect = 6.650e-10
Identity = 34/66 (51.52%), Postives = 44/66 (66.67%), Query Frame = 1 
Query:  646 GGELVRADAVIVTVPLSVLQEGAVEFDPPLREETASALSRLGMGTYEKIIMEFEEPFWPADTPFIG 843
            GGE VR DA I+ VPL VL+ G + F+PPL    A+A+SRLG G   K++M+F E FWP D  + G
Sbjct:  236 GGEEVRGDAAIIAVPLGVLKSGGIVFEPPLPTWKANAVSRLGFGDLNKVVMQFPEAFWPRDDDYFG 301
[Close]
BLAST of mRNA_L-elsbetiae_contig6985.15767.1 vs. uniprot
Match: A0A7S0H9L6_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0H9L6_9CRYP)

HSP 1 Score: 70.9 bits (172), Expect = 9.820e-10
Identity = 37/88 (42.05%), Postives = 52/88 (59.09%), Query Frame = 1 
Query: 1411 ELPEPVSVFVTSWAEEPLQRGSYSYFPLGARDDDIHRAGQGATCGAPGAEPGAEGSERVFFAGEATVPGLEGSMHGAYLSGVRAVEDV 1674
            E+P PV V  +SW  +PL RGSYSY    AR++DI   G+    G+       + +  + FAGEAT P   G++HGAYL+GVR  + +
Sbjct:  160 EIPSPVKVVRSSWGSDPLFRGSYSYLATSAREEDILALGKPVVVGS-------QQTCHICFAGEATHPHFYGTVHGAYLAGVREADRI 240
[Close]
BLAST of mRNA_L-elsbetiae_contig6985.15767.1 vs. uniprot
Match: A0A4Y8JZS1_9MICO (FAD-binding protein n=1 Tax=Cryobacterium sp. TMT1-51 TaxID=1259239 RepID=A0A4Y8JZS1_9MICO)

HSP 1 Score: 73.2 bits (178), Expect = 1.060e-9
Identity = 36/64 (56.25%), Postives = 44/64 (68.75%), Query Frame = 1 
Query:  643 GGGELVRADAVIVTVPLSVLQEGAVEFDPPLREETASALSRLGMGTYEKIIMEFEEPFWPADTP 834
            G GE + AD VIVTVPL VL+   +EFDPPL      A++ LGMGT +KI ++FEEPFW  D P
Sbjct:  358 GNGESLSADRVIVTVPLGVLKTKVMEFDPPLPFAHRGAIAALGMGTLDKIWLQFEEPFWDTDAP 421
[Close]
BLAST of mRNA_L-elsbetiae_contig6985.15767.1 vs. uniprot
Match: R4LHP1_9ACTN (Amine oxidase n=2 Tax=Actinoplanes sp. N902-109 TaxID=649831 RepID=R4LHP1_9ACTN)

HSP 1 Score: 72.4 bits (176), Expect = 1.210e-9
Identity = 33/52 (63.46%), Postives = 40/52 (76.92%), Query Frame = 1 
Query:  667 DAVIVTVPLSVLQEGAVEFDPPLREETASALSRLGMGTYEKIIMEFEEPFWP 822
            DAV+VTVP+ VLQ G + FDPPL EE  +ALSRLGMG  EK+++ F E FWP
Sbjct:  275 DAVLVTVPVGVLQAGTITFDPPLPEEHRAALSRLGMGRVEKVVLRFGERFWP 326
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6985.15767.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KT75_9PHAE5.250e-19059.11PAO protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0... [more]
UPI001A9510602.290e-1156.45FAD-dependent oxidoreductase n=1 Tax=Mycolicibacte... [more]
A0A117IK81_9MYCO2.180e-1048.48Monoamine oxidase n=1 Tax=Mycolicibacterium novoca... [more]
UPI001C84CE222.560e-1049.21FAD-dependent oxidoreductase n=1 Tax=Mycobacterium... [more]
A0A3M8L319_9MICO2.670e-1056.67FAD-dependent oxidoreductase n=2 Tax=Cryobacterium... [more]
A0A3M2AGZ2_9CHLR5.430e-1038.46FAD-binding protein n=1 Tax=Chloroflexi bacterium ... [more]
A0A061S6Q5_9CHLO6.650e-1051.52Lysine-specific histone demethylase 1 (Fragment) n... [more]
A0A7S0H9L6_9CRYP9.820e-1042.05Hypothetical protein n=1 Tax=Hanusia phi TaxID=303... [more]
A0A4Y8JZS1_9MICO1.060e-956.25FAD-binding protein n=1 Tax=Cryobacterium sp. TMT1... [more]
R4LHP1_9ACTN1.210e-963.46Amine oxidase n=2 Tax=Actinoplanes sp. N902-109 Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6985contigL-elsbetiae_contig6985:2992..9349 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score528.5
Seed ortholog evalue3.6e-147
Seed eggNOG ortholog2880.D7FK53
KEGG rclassRC00053,RC00225
KEGG koko:K13366
KEGG ReactionR01914,R09076
KEGG Pathwayko00330,ko00410,ko01100,map00330,map00410,map01100
Hectar predicted targeting categoryother localisation
EggNOG free text desc.positive regulation of spermidine biosynthetic process
EggNOG OGsCOG1231@1,KOG0029@2759,KOG0685@1,KOG0685@2759
EC1.5.3.14,1.5.3.16
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Ec32 ortholog descriptionAmine oxidase
Ec32 orthologEc-04_005780.1
Exons8
Model size2635
Cds size1581
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6985.15767.1prot_L-elsbetiae_contig6985.15767.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6985 3926..9229 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816774.413962-UTR-L-elsbetiae_contig6985:2991..39251622816774.413962-UTR-L-elsbetiae_contig6985:2991..3925Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6985 2992..3925 -
1691683803.1181145-UTR-L-elsbetiae_contig6985:2991..39251691683803.1181145-UTR-L-elsbetiae_contig6985:2991..3925Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6985 2992..3925 -
1622816774.536012-UTR-L-elsbetiae_contig6985:9229..93491622816774.536012-UTR-L-elsbetiae_contig6985:9229..9349Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6985 9230..9349 -
1691683803.2348316-UTR-L-elsbetiae_contig6985:9229..93491691683803.2348316-UTR-L-elsbetiae_contig6985:9229..9349Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6985 9230..9349 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816774.4275596-CDS-L-elsbetiae_contig6985:3925..41811622816774.4275596-CDS-L-elsbetiae_contig6985:3925..4181Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6985 3926..4181 -
1691683803.1365833-CDS-L-elsbetiae_contig6985:3925..41811691683803.1365833-CDS-L-elsbetiae_contig6985:3925..4181Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6985 3926..4181 -
1622816774.4406831-CDS-L-elsbetiae_contig6985:4970..53471622816774.4406831-CDS-L-elsbetiae_contig6985:4970..5347Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6985 4971..5347 -
1691683803.1487246-CDS-L-elsbetiae_contig6985:4970..53471691683803.1487246-CDS-L-elsbetiae_contig6985:4970..5347Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6985 4971..5347 -
1622816774.4545865-CDS-L-elsbetiae_contig6985:5419..57461622816774.4545865-CDS-L-elsbetiae_contig6985:5419..5746Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6985 5420..5746 -
1691683803.1601465-CDS-L-elsbetiae_contig6985:5419..57461691683803.1601465-CDS-L-elsbetiae_contig6985:5419..5746Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6985 5420..5746 -
1622816774.4710424-CDS-L-elsbetiae_contig6985:6271..64621622816774.4710424-CDS-L-elsbetiae_contig6985:6271..6462Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6985 6272..6462 -
1691683803.1783628-CDS-L-elsbetiae_contig6985:6271..64621691683803.1783628-CDS-L-elsbetiae_contig6985:6271..6462Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6985 6272..6462 -
1622816774.4863353-CDS-L-elsbetiae_contig6985:6555..66731622816774.4863353-CDS-L-elsbetiae_contig6985:6555..6673Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6985 6556..6673 -
1691683803.1917067-CDS-L-elsbetiae_contig6985:6555..66731691683803.1917067-CDS-L-elsbetiae_contig6985:6555..6673Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6985 6556..6673 -
1622816774.4995549-CDS-L-elsbetiae_contig6985:7120..72041622816774.4995549-CDS-L-elsbetiae_contig6985:7120..7204Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6985 7121..7204 -
1691683803.202529-CDS-L-elsbetiae_contig6985:7120..72041691683803.202529-CDS-L-elsbetiae_contig6985:7120..7204Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6985 7121..7204 -
1622816774.515116-CDS-L-elsbetiae_contig6985:8185..83551622816774.515116-CDS-L-elsbetiae_contig6985:8185..8355Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6985 8186..8355 -
1691683803.2146688-CDS-L-elsbetiae_contig6985:8185..83551691683803.2146688-CDS-L-elsbetiae_contig6985:8185..8355Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6985 8186..8355 -
1622816774.5258937-CDS-L-elsbetiae_contig6985:9171..92291622816774.5258937-CDS-L-elsbetiae_contig6985:9171..9229Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6985 9172..9229 -
1691683803.2254565-CDS-L-elsbetiae_contig6985:9171..92291691683803.2254565-CDS-L-elsbetiae_contig6985:9171..9229Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6985 9172..9229 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6985.15767.1

>prot_L-elsbetiae_contig6985.15767.1 ID=prot_L-elsbetiae_contig6985.15767.1|Name=mRNA_L-elsbetiae_contig6985.15767.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=527bp
MGRVRVLAQQCDDADVPAGDAIEKLLLDEPFCSLSVRELSRLRLRVASLG
LWHGCDMKDMQLRSLEFEDKPFHGGQGVYGDFPGPHCVVEGGVERIAEAV
ASPQVRECLRLHAPVDRVAITNPDKKAAATAAATAAAAALGGDEQVGGAV
HVSIKREGATAAVMGGRGAGVEGGGGGELVRADAVIVTVPLSVLQEGAVE
FDPPLREETASALSRLGMGTYEKIIMEFEEPFWPADTPFIGCCCPQPSPL
VAPPQSTTAATAGMAAAHGGSPVLAARSAIATPALIAASNGALGSTVAAT
AAAAAAAADSTAPALAVGGATPAAAAAAASADSSPPPSPPPPLPAIPIFL
ENYLWSKGVPVLTAAVTGERARLVSAAAAAAAAAAAAVAAAAATAEGGGD
GDSWRASHAREMYRRLIKPALVEGLGRRGEELPEPVSVFVTSWAEEPLQR
GSYSYFPLGARDDDIHRAGQGATCGAPGAEPGAEGSERVFFAGEATVPGL
EGSMHGAYLSGVRAVEDVAYASGLPL*
back to top

mRNA from alignment at L-elsbetiae_contig6985:2992..9349-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6985.15767.1 ID=mRNA_L-elsbetiae_contig6985.15767.1|Name=mRNA_L-elsbetiae_contig6985.15767.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=6358bp|location=Sequence derived from alignment at L-elsbetiae_contig6985:2992..9349- (Laminarionema elsbetiae ELsaHSoW15)
AAACAGGTGTCAGAGTCCAACCCTTGGATAGAGACGACGCCTTCCGTGTC
GCTCTTCTGCGGCGGCGAGCGCGTGGCCGCCGCCGAGGCGGCCGACACGC
ACGAGGCTTTCTGCGGGCTGATGGGCCGGGTCAGAGTGCTGGCGCAGCAG
TGCGACGACGCCGATGTTCCCGCCGGCGGTGAGACAACAACTAACTTCCC
GAAAAAAAACCTGACCGCTGTCTTATCTGTATAGAGGCGTCTGTCTCCCC
CCCGAGAAGAGTCGGGGGTGGGTTGGGTGGATGTTTCGGGCGTGGGTTTG
CGCGAGCTCTACTCTTGGTGTTGTGGTGGTTGGTGTCTGGAGAGTTGAGT
GTCGATACACAACGTGGGCTGTGCGGACGGGCTTTCTTCTCGACAGGCCG
CTCCTTGTCAGTTTCCGCTTCCGTTTCCCTTTGCCTTTGCCTCCGCCCTC
CCCTTTCCGTTCGTCCCCTTTCCCTCTCAATATGGCTCTTACGCTGGAGG
GTTGCCCTCGAAGCCAACCCCGGGGGTCATTTGTAGCCCCGGGAGGGGCT
TGCTGTGCTCTTTGAAACACGCCCGGCGTTACATGCCTCAAGTCTATCCC
GCGAGTTTTTTCGCTTTCGCAGTCCCCCCTGAGGACAAGCGATCGACAAG
CATGTGCGCTTGACGGCGATGATGAACGAGGTGCTCACTGCGTTGTTCGT
CAGTTTGCGCATCCACCTGCGCGCCGAGAATATATAAGCAGCTATGTACG
GTGTTGCCCCCCAGGACTATTGTTATCACCCCAACCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCGGCCCCCGGTTTCCCAGGCCACACCGGAGCC
CCCNNNNNNNNNNTTTGCCCTCCCCCCGCCGCGCCGAAAAACAATAAGCG
CCACTCTCCGGCGTGCCCCCCCCGGACTTTTTTTCCCCCCCCCCCCCCCC
CCCCCCCCCCCCGCGCCCCTTCCCCACGGGGCCGCTGTTTCCAGATGCCA
TCGAGAAGCTCCTGCTGGACGAGCCGTTCTGCTCTCTGTCCGTGCGAGAG
CTGTCGAGATTGCGGCTGAGGGTGGCATCCCTGGGCCTGTGGCACGGCTG
CGACATGAAGGACATGCAGCTGAGGTCGCTCGAGTTCGAAGACAAGCCTT
TCCACGGCGGGCAGGTGAGAATGGGGAAACCGGATCGTCGAAACGGGGTG
CGGACAGAAACTATGTGCCTGTTTTTTGCGGGGGGAGGGGGGTCGGGAGA
GAGGGGGGGGGGGGGGGGGAGGCGGGGTGTACGGGGGGGGCACTGGTTGA
TCATGCCATGCTTGACCTCATGCCGCAGCCGCTAGACCTGGGCCNNNNNN
NNNNGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGCAGGCTGCGTGTACGGAGTGTGCACTGATTG
ATCATGCCATGCTTGACGTCATGCCGCAGCCGCTAGACCTGGACCTCGCA
CCCCCTGCGAAGTTTTTGTTTGCGGGGGACGGCGGGGGGGCATGGCCTTG
TATCGGGTTTACACTCGCGAAACGCCAATCGTAAGGCGTCATTGGTGTGC
ACTTGTTCAGCGAGTCGTACGAGGTAGCTGGCTGTGTTCTACTACGAAGA
ACTGCTCGGGGGGGACTTCGGACGTGTCTTCGCGCGTTTTTTCATTCGCA
CATGGGTGGCGGCTTCCAAAAAATGGTCTTGGTGCGTTTTAAATCGTCTG
GGGTGTCGCCATTCGTTCCTATAGAAGACAGGCATGGAGGTATGTACCGT
AGGTGACACATGATACCACCCCGCTGCTGCACACAGAACCGCTGATTCGT
GAGGCGACCGACAAGGCAAAACAAAAAATGCACGAGCAAGTGCGAAGCGG
CCGGGAAGAAGCCCCGCCAGGGTCGCACGCTCGAACACGTGTTTACCACT
CCTTCCCCACCCCCCTGTCCTGGTCTTGCCACGGGCCCCCCTTCTGCTGT
CATCTCGACGTGGTGATGACATGCGATGTCGTCCGTCCCCCTTCGCGGAT
CCTGCGTGCGGCGTTGTTGTTGTTGCTGTTGTTGTTCTCTCTCAGGGCGT
GTACGGCGACTTCCCCGGGCCGCACTGCGTCGTGGAGGGCGGCGTGGAGC
GCATCGCGGAGGCGGTCGCTAGCCCCCAGGTTGGTCGCCGCGAAAATACA
ACCATTTTGGCATCTGCACGGCTCGCCGCGCGCTGTTTGATGCCCGTGTG
TTTGGTTTTTCCCAAAGGTGGTTGTGTAGGAGGCCAACGCAGCGCGTAAT
TTACGCCGGCTGCCGTACGTGCTCCTGTATCTCAGCGGCGGCAGCACACC
CGACACCAGCCAGCACGTCTCGGGAACATGTCTACTGCCCCCTTCAATTT
TGCCTTTCTTTTTTTTTATTCTCCTTGGAAGCCCCGCCTCTTTCAGCTCG
TATTTTTACCTGCTTAAAAAGAACCCCCCCCCCCCCCGTTTTTCGTGCGA
AAATGGACATTTGGGGGTATACCCCTTTTCGAATGATGCCTGTCCATTGC
GTGACCCACCTCACACAACCCCCTGTCCTCGCACACAACCCATGCGCTCA
CCACACAACCCATGCCGTGTCAAAAGGTTCGAGAGTGTCTACGCCTCCAC
GCCCCGGTCGACCGGGTGGCCATCACCAACCCCGACAAGAAAGCTGCCGC
TACCGCTGCCGCTACCGCTGCTGCTGCTGCTCTCGGGGGCGATGGTTCCG
GCACCAGCGCCACCGGCGAGCAAGAGAGAGCCAGCCTTCCGGTGGCAGAC
GGAGCCTCCGCCGGCGAGGCTAGGATCGGCGAGGAAGAGCAGGTGGGCGG
TGCGGTCCACGTGTCCATCAAGAGGGAGGGAGCAACGGCGGCAGTGATGG
GAGGGCGGGGCGCGGGGGTGGAAGGGGGCGGGGGCGGGGAGCTGGTGCGG
GCGGACGCCGTGATCGTGACCGTGCCGCTGTCCGTGCTGCAGGAAGGGGC
GGTGGAGTTCGACCCCCCTCTGCGTGAGGTGCGCGTGTACCGATCGTTTT
TGCTGCCGCCGTTCATGCTGTTGTTGTCGGATGTACTTTTGTCGTTTTTG
ATGTTGTTGTTGTTGTTGTTGTTGTTGTCTTTGATGTTGTGGTTTTGTTC
CCGTCTTCGGTGCTCTCAGCCTGCAAGAGAGACGGCGGCTTTCATCGTGG
CAGGTGTTGGACCTGGTAGTAGATGGTTTTGCGTTTATAAGAAGGATACG
AGCACACCTCGCGCGCGATAGAAGAAAGCGATTTTGTGACCTCCTGGTCG
ACTCTGCGACACAGCAAGTAAGTGTGTTGGAATCCCAGCTATGTACATAG
TATTGTTCTTGCGTCGTCAAGGGGGGGGCGAGCTGTGATCTCTTCGCGGT
AGAAGCGAGCACTTGGAGGTAGGCAGGCGTGCACGGTCTCTAGAGATAGG
CCATCTACGAGCAAAGCACCAAACGAGCTGTTGCCGACCACCCTTGCTCG
TCATATGTACCTCTGCTGCATATGCGCTCGGGGCAAAAACGCTACTGTCG
CAGGAAACTGCGTCGGCTCTGTCGCGGCTGGGCATGGGCACGTACGAGAA
AATCATCATGGAGTTCGAGGAGCCCTTCTGGCCCGCCGACACGCCGTTCA
TCGGGTGCTGCTGCCCGCAGCCCTCGCCGCTCGTGGCCCCGCCGCAGTCC
ACAACGGCGGCGACCGCAGGAATGGCCGCCGCTCACGGGGGATCTCCCGT
CCTCGCCGCTAGGTCCGCGATCGCAACGCCAGCACTGATCGCGGCATCAA
ACGGCGCGTTGGGTTCGACGGTGGCGGCGACGGCGGCGGCGGCGGCGGCG
GCGGCCGATTCTACGGCCCCGGCGCTTGCTGTAGGCCATCATCATTGCCA
CCGTCATCCCATCCCGGCCGTGGGTGGGCTGCGTGTAGCTTCTCCCATCG
AGGTCGGGGGCGCCACCCCCGCTGCTGCTGCGGCAGCGGCGAGCGCAGAT
TCTTCTCCTCCTCCTTCTCCTCCCCCCCCCCTCCCAGCAATCCCGATATT
CTTGGAGAATTACTTGTGGTCGAAAGGGGTGCCGGTGCTGACAGCCGCGG
TTACCGGCGAACGGGCGCGGCTGGTGTCGGCTGCTGCTGCGGCGGCGGCG
GCGGCGGCGGCGGCGGTGGCGGCAGCAGCAGCAACAGCGGAGGGGGGGGG
CGATGGGGACAGCTGGAGGGCCTCCCATGCGAGAGAAATGTACCGCCGGC
TGATCAAGCCTGCGCTCGTGGAGGGGCTGGGGAGGCGCGGGGAGGAACTA
CCCGAACCGGTGTCGGTGTTTGTCACAAGGTGAGTCGACCGCGTAATCGA
GCGCTCGAATTTCGTACCTCTAGCGAAGTTAAAGTTTGCAGCATCGTCCC
GGCACCCGGTTGCAACCAACAAACAAAGCGCCGAATAATCAATCGAGAGT
TCCCCCCTACGTATCTAGATCCCGAAGATGCCACTGTAAGCACCCGTCTT
TTGGCGAGTGTGTCCCATCCGTTGTGCGTCACGTTGGAAATCGGCGCCCT
GCCCGTCACCGAGGAATCGGGCGCGAAAAAACGGCGGCATCCCGTGTGTG
TGGGCCAAAAGGATTGTGTTACCGAAGCCTACCTCTGAGCCTTGACGCGA
TCTGATGGGCGTGAAGGGCGCTACATATGTTATCTACGTGCGTGTTTTTT
CGTCTCCTGTTCTATCTTCACACGCCGGCTCTATCTACATGCACCAGCTG
TGCTGTCGTTGATCATGCATGCTCTGCGCGGCAAACCCCCAGCCCCTGTG
CACGCACGCATGCACGACAAAAAATAACAAGGAGACTTTGATTCCTACAA
GCGACCACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCGCCCCCCCCCNNNNNNNNNNC
CCCCCCGCCCGCACCCATGCACAAAAAAAAAAAACAAGGGGACTTTTATC
CCTACAACCGCCCCCCCCCCCCCCCCCCCCGTTACCGTTACCCTCCCCCT
TCCAACTGCCACCCCTCCCGCGCGCGCACGCGCCGCATTGTCCCCGTGGC
CCCGCCCAAACGCAACAGCTGGGCAGAAGAGCCTCTCCAGCGGGGGTCTT
ACAGCTATTTCCCGCTCGGCGCCCGAGACGACGACATTCACAGGGCGGGC
CAAGGCGCAACCTGCGGGGCCCCCGGGGCGGAGCCCGGCGCGGAGGGAAG
CGAGCGCGTCTTCTTCGCGGGGGAGGCTACGGTGCCCGGGCTGGAAGGGA
GCATGCACGGAGCGTACCTGTCGGGGGTCCGGGCGGTGGAAGACGTCGCT
TACGCGTCTGGCCTACCTCTGTAAAGTTATTGCACTGCTGCAAAGTAGAT
ACCTACGTTAGTGCAGGCTTCTTACTGTACCAGGTGGTTGCGGTTTTGAG
TCCACCGGAGGTAGGGGGGAAATGCGGCCGGTGTGTGTTGGCGGGCGGGC
GAAAACGCGCGCGTTTTATGTGGCTAAATATGTAGCCGGGTCCATCTGTC
CGTCAATCGGTGCAGCGCGGTTTCGGTTTTTGGTTTTGCGTTGTTCGTTG
GCGTTCAAGAGGACCCGATTGTTTCTTGGAGCATTGTGGAAGCGGAAAAA
GCATTTACTGCCAACGACGCGGCACGGGCCTGATACTTTTTATTCCTGAG
GAGCTCCCGTTGGCTCGCGTTGGAAGAAACAAAATACGGTTTGCAAAAGT
GTTGGAGCATGGGCTTTGCCAATAAGGGGGTAGGTAGATCGCTGAGGACG
CACATGGCAGAGTTTTGTGCGTGCGTACATAATATACCCACCGCCTTGCT
CTCTGTAAGACACTGCGACTCTCTTTGTAGTCTGGGTCGAGTTTAGGTAT
GTTTAGCATGTTGACTCTTCGGTTAATAATAGCGCCGGCGATGCTGTTGA
CTTTTCCCCCAAAATATGTACTTTCTTTCCGACCTCCCTCGACAGCAGCG
TTTGGATGTGCGATGACGCGTGTCTTTGTAGGAACAGACCTCCTGAAGCG
GTCATCGAGAGCACGATGGCATCACCTGAGCCCCAGGACTGATTGATATG
GGAGAGGGAAGAGGGGGGTACGCGCTCAGGAGTGGGCGGGGGGAAGTCGC
GCATAGGGTTAGGTTACGTTGGTCAAGGTTGTGCGTTGCGCCCCACGTTG
ATGGCACACCGGTTCGTTGGCGAAAGGAAACGGCGAAGGAAGCTCTTCAA
CCACTTGTTCTGCAGAAATATACCTAGATCTGTACATGCGATAATCGCGA
AAATTGCC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig6985:2992..9349-

>mRNA_L-elsbetiae_contig6985.15767.1 ID=mRNA_L-elsbetiae_contig6985.15767.1|Name=mRNA_L-elsbetiae_contig6985.15767.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3162bp|location=Sequence derived from alignment at L-elsbetiae_contig6985:2992..9349- (Laminarionema elsbetiae ELsaHSoW15)
ATGGGCCGGGTCAGAGTGCTGGCGCAGCAGTGCGACGACGCCGATGTTCC
CGCCGGCGATGGGCCGGGTCAGAGTGCTGGCGCAGCAGTGCGACGACGCC
GATGTTCCCGCCGGCGATGCCATCGAGAAGCTCCTGCTGGACGAGCCGTT
CTGCTCTCTGTCCGTGCGAGAGCTGTCGAGATTGCGGCTGAGGGTGGCAT
CCCTGGGCCTGTGGCACGGCTGCGACATGAAGGACATGCAGCTGAGGTCG
CTCGAGTTCGAAGACAAGCCTTTCCACGGCGGGCAGATGCCATCGAGAAG
CTCCTGCTGGACGAGCCGTTCTGCTCTCTGTCCGTGCGAGAGCTGTCGAG
ATTGCGGCTGAGGGTGGCATCCCTGGGCCTGTGGCACGGCTGCGACATGA
AGGACATGCAGCTGAGGTCGCTCGAGTTCGAAGACAAGCCTTTCCACGGC
GGGCAGGGCGTGTACGGCGACTTCCCCGGGCCGCACTGCGTCGTGGAGGG
CGGCGTGGAGCGCATCGCGGAGGCGGTCGCTAGCCCCCAGGGCGTGTACG
GCGACTTCCCCGGGCCGCACTGCGTCGTGGAGGGCGGCGTGGAGCGCATC
GCGGAGGCGGTCGCTAGCCCCCAGGTTCGAGAGTGTCTACGCCTCCACGC
CCCGGTCGACCGGGTGGCCATCACCAACCCCGACAAGAAAGCTGCCGCTA
CCGCTGCCGCTACCGCTGCTGCTGCTGCTCTCGGGGGCGATGGTTCGAGA
GTGTCTACGCCTCCACGCCCCGGTCGACCGGGTGGCCATCACCAACCCCG
ACAAGAAAGCTGCCGCTACCGCTGCCGCTACCGCTGCTGCTGCTGCTCTC
GGGGGCGATGAGCAGGTGGGCGGTGCGGTCCACGTGTCCATCAAGAGGGA
GGGAGCAACGGCGGCAGTGATGGGAGGGCGGGGCGCGGGGGTGGAAGGGG
GCGGGGGCGGGGAGCTGGTGCGGGCGGACGCCGTGATCGTGACCGTGCCG
CTGTCCGTGCTGCAGGAAGGGGCGGTGGAGTTCGACCCCCCTCTGCGTGA
GAGCAGGTGGGCGGTGCGGTCCACGTGTCCATCAAGAGGGAGGGAGCAAC
GGCGGCAGTGATGGGAGGGCGGGGCGCGGGGGTGGAAGGGGGCGGGGGCG
GGGAGCTGGTGCGGGCGGACGCCGTGATCGTGACCGTGCCGCTGTCCGTG
CTGCAGGAAGGGGCGGTGGAGTTCGACCCCCCTCTGCGTGAGGAAACTGC
GTCGGCTCTGTCGCGGCTGGGCATGGGCACGTACGAGAAAATCATCATGG
AGTTCGAGGAGCCCTTCTGGCCCGCCGACACGCCGTTCATCGGGTGCTGC
TGCCCGCAGCCCTCGCCGCTCGTGGCCCCGCCGCAGTCCACAACGGCGGC
GACCGCAGGAATGGCCGCCGCTCACGGGGGATCTCCCGTCCTCGCCGCTA
GGTCCGCGATCGCAACGCCAGCACTGATCGCGGCATCAAACGGCGCGTTG
GGTTCGACGGTGGCGGCGACGGCGGCGGCGGCGGCGGCGGCGGCCGATTC
TACGGCCCCGGCGCTTGCTGAAACTGCGTCGGCTCTGTCGCGGCTGGGCA
TGGGCACGTACGAGAAAATCATCATGGAGTTCGAGGAGCCCTTCTGGCCC
GCCGACACGCCGTTCATCGGGTGCTGCTGCCCGCAGCCCTCGCCGCTCGT
GGCCCCGCCGCAGTCCACAACGGCGGCGACCGCAGGAATGGCCGCCGCTC
ACGGGGGATCTCCCGTCCTCGCCGCTAGGTCCGCGATCGCAACGCCAGCA
CTGATCGCGGCATCAAACGGCGCGTTGGGTTCGACGGTGGCGGCGACGGC
GGCGGCGGCGGCGGCGGCGGCCGATTCTACGGCCCCGGCGCTTGCTGTCG
GGGGCGCCACCCCCGCTGCTGCTGCGGCAGCGGCGAGCGCAGATTCTTCT
CCTCCTCCTTCTCCTCCCCCCCCCCTCCCAGCAATCCCGATATTCTTGGA
GAATTACTTGTGGTCGAAAGGGGTGCCGGTGCTGACAGCCGCGGTTACCG
GCGAACGGGCGCGGCTGGTGTCGGCTGCTGCTGCGGCGGCGGCGGCGGCG
GCGGCGGCGGTGGCGGCAGCAGCAGCAACAGCGGAGGGGGGGGGCGATGG
GGACAGCTGGAGGGCCTCCCATGCGAGAGAAATGTACCGCCGGCTGATCA
AGCCTGCGCTCGTGGAGGGGCTGGGGAGGCGCGGGGAGGAACTACCCGAA
CCGGTGTCGGTGTTTGTCACAAGGTCGGGGGCGCCACCCCCGCTGCTGCT
GCGGCAGCGGCGAGCGCAGATTCTTCTCCTCCTCCTTCTCCTCCCCCCCC
CCTCCCAGCAATCCCGATATTCTTGGAGAATTACTTGTGGTCGAAAGGGG
TGCCGGTGCTGACAGCCGCGGTTACCGGCGAACGGGCGCGGCTGGTGTCG
GCTGCTGCTGCGGCGGCGGCGGCGGCGGCGGCGGCGGTGGCGGCAGCAGC
AGCAACAGCGGAGGGGGGGGGCGATGGGGACAGCTGGAGGGCCTCCCATG
CGAGAGAAATGTACCGCCGGCTGATCAAGCCTGCGCTCGTGGAGGGGCTG
GGGAGGCGCGGGGAGGAACTACCCGAACCGGTGTCGGTGTTTGTCACAAG
CTGGGCAGAAGAGCCTCTCCAGCGGGGGTCTTACAGCTATTTCCCGCTCG
GCGCCCGAGACGACGACATTCACAGGGCGGGCCAAGGCGCAACCTGCGGG
GCCCCCGGGGCGGAGCCCGGCGCGGAGGGAAGCGAGCGCGTCTTCTTCGC
GGGGGAGGCTACGGTGCCCGGGCTGGAAGGGAGCATGCACGGAGCGTACC
TGTCGGGGGTCCGGGCGGTGGAAGACGTCGCTTACGCGTCTGGCCTACCT
CTGTAACTGGGCAGAAGAGCCTCTCCAGCGGGGGTCTTACAGCTATTTCC
CGCTCGGCGCCCGAGACGACGACATTCACAGGGCGGGCCAAGGCGCAACC
TGCGGGGCCCCCGGGGCGGAGCCCGGCGCGGAGGGAAGCGAGCGCGTCTT
CTTCGCGGGGGAGGCTACGGTGCCCGGGCTGGAAGGGAGCATGCACGGAG
CGTACCTGTCGGGGGTCCGGGCGGTGGAAGACGTCGCTTACGCGTCTGGC
CTACCTCTGTAA
back to top