mRNA_L-elsbetiae_contig6981.15762.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6981.15762.1
Unique NamemRNA_L-elsbetiae_contig6981.15762.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig6981.15762.1 vs. uniprot
Match: D7FS84_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FS84_ECTSI)

HSP 1 Score: 92.4 bits (228), Expect = 5.530e-20
Identity = 48/120 (40.00%), Postives = 69/120 (57.50%), Query Frame = 2 
Query:   29 SEELRIGLYSNAEYLQGPQEAKAFLEKDLDLIIGGCTEGLRRHPSPDPDRSIDHCNWFTMFRHPVSRLVSAYYFYCKTPSHRNHNLIPKVCGSEGALNDDGASDLHAFAEHWGNFGLLEF 388
            ++ + +GLY + ++L+G   A+ FL  +  L+ G  TEGLR    P     +  C WFT+FRHP+ RLVSAY FYCK            +C +     +   +DL+AFAEHWG+FGL +F
Sbjct:   19 AQNVTVGLYDSPQWLEGKDFAQDFLGDENSLMWGAYTEGLR----PFGGLGLRECKWFTIFRHPIPRLVSAY-FYCKKKPQDG------LCATVALDANADDTDLYAFAEHWGDFGLRQF 127
[Close]
BLAST of mRNA_L-elsbetiae_contig6981.15762.1 vs. uniprot
Match: A0A6H5JY77_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY77_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 2.390e-17
Identity = 46/113 (40.71%), Postives = 64/113 (56.64%), Query Frame = 2 
Query:   50 LYSNAEYLQGPQEAKAFLEKDLDLIIGGCTEGLRRHPSPDPDRSIDHCNWFTMFRHPVSRLVSAYYFYCKTPSHRNHNLIPKVCGSEGALNDDGASDLHAFAEHWGNFGLLEF 388
            L+ + E+  G   A+ F++++     GG TEGLR +   D       C WFT+FRHPVSR+VSAY FYC+   H       ++C +   + D    DL  FAEHWGN+GL +F
Sbjct:   83 LFDDIEWSSGRSYAETFVKENAVFTYGGYTEGLRMYDDRD-------CKWFTVFRHPVSRVVSAY-FYCQRAHH------DQLCAA--VVLDASKVDLLTFAEHWGNYGLRQF 179
[Close]
BLAST of mRNA_L-elsbetiae_contig6981.15762.1 vs. uniprot
Match: A0A6H5JQY7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQY7_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 5.050e-15
Identity = 43/129 (33.33%), Postives = 72/129 (55.81%), Query Frame = 2 
Query:    2 KMLRNYKGPSEELRIGLYSNAEYLQGPQEAKAFLEKDLDLIIGGCTEGLRRHPSPDPDRSIDHCNWFTMFRHPVSRLVSAYYFYCKTPSHRNHNLIPKVCGSEGALNDDGASDLHAFAEHWGNFGLLEF 388
            +M+++Y   +    +G +++ +Y  G +  +  L++   LI G  TEGLR      P  ++  C WFTM RHP++RLVSA+ +    PS +       +C +     +DG  D++ FAEHWGN G+++F
Sbjct:   53 RMIKDYAAATNTT-VGEFTHTQYNAGDRGVQQILDRRPSLIWGAYTEGLR------PYATVLGCKWFTMVRHPIARLVSAFNYCGIVPSDQ-------LCATRIHKPEDG--DIYDFAEHWGNHGVVQF 165
[Close]
BLAST of mRNA_L-elsbetiae_contig6981.15762.1 vs. uniprot
Match: D7G715_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G715_ECTSI)

HSP 1 Score: 79.7 bits (195), Expect = 6.040e-15
Identity = 42/87 (48.28%), Postives = 51/87 (58.62%), Query Frame = 2 
Query:  128 GGCTEGLRRHPSPDPDRSIDHCNWFTMFRHPVSRLVSAYYFYCKTPSHRNHNLIPKVCGSEGALNDDGASDLHAFAEHWGNFGLLEF 388
            GG  E LRR P+  PD     C WFT+FRHPVSRLVSAYY+  + PS +       +C SE   + +   DL  FA HWGNF L +F
Sbjct:  147 GGYLEALRRTPAFQPDDERTPCRWFTVFRHPVSRLVSAYYYCREDPSDQ-------LCASEFVSSRN--VDLVTFARHWGNFALRQF 224
[Close]
BLAST of mRNA_L-elsbetiae_contig6981.15762.1 vs. uniprot
Match: A0A6H5JNJ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNJ0_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 1.330e-13
Identity = 47/127 (37.01%), Postives = 67/127 (52.76%), Query Frame = 2 
Query:    8 LRNYKGPSEELRIGLYSNAEYLQGPQEAKAFLEKDLDLIIGGCTEGLRRHPSPDPDRSIDHCNWFTMFRHPVSRLVSAYYFYCKTPSHRNHNLIPKVCGSEGALNDDGASDLHAFAEHWGNFGLLEF 388
            LRNY     E  + L  +  Y +G +  +  L     LI GG  EGLR         +   C WFTM RHP++RL+SA+Y YC   S  N +   ++C +     +DG  D++ FA+HWGN+ LL+F
Sbjct:   55 LRNYAESRNET-VALCHSDWYARGDKGIQDLLNDKPVLIAGGYAEGLRTS-------AFQGCKWFTMMRHPIARLISAFY-YC---SGGNRD---QLCAANIHKPEDG--DIYDFAKHWGNYALLQF 164
[Close]
BLAST of mRNA_L-elsbetiae_contig6981.15762.1 vs. uniprot
Match: D7FWQ3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWQ3_ECTSI)

HSP 1 Score: 67.8 bits (164), Expect = 1.130e-10
Identity = 38/91 (41.76%), Postives = 52/91 (57.14%), Query Frame = 2 
Query:  116 DLIIGGCTEGLRRHPSPDPDRSIDHCNWFTMFRHPVSRLVSAYYFYCKTPSHRNHNLIPKVCGSEGALNDDGASDLHAFAEHWGNFGLLEF 388
            +++ GG TE LRR    D       C +FT+FRHP++R+VSAY FYC++       L    C SE  + D    DL  FA+HWGNF + +F
Sbjct:  211 NVMAGGYTEALRRSEPVDAG-----CRFFTLFRHPIARMVSAY-FYCRS------TLGDAACASE--VVDAKDVDLLTFAKHWGNFAVRQF 287
[Close]
BLAST of mRNA_L-elsbetiae_contig6981.15762.1 vs. uniprot
Match: D7G716_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G716_ECTSI)

HSP 1 Score: 64.3 bits (155), Expect = 1.840e-9
Identity = 40/100 (40.00%), Postives = 52/100 (52.00%), Query Frame = 2 
Query:   89 AKAFLEKDLDLIIGGCTEGLRRHPSPDPDRSIDHCNWFTMFRHPVSRLVSAYYFYCKTPSHRNHNLIPKVCGSEGALNDDGASDLHAFAEHWGNFGLLEF 388
            AK  L    +++ GG TE LR             C +FT+FRHP++R+VSAY FYC++ S          C SE     D   DL  FA+HWGNF L +F
Sbjct:  223 AKLALGDKWNVMTGGYTEALRLSEPVGAG-----CRFFTLFRHPIARMVSAY-FYCRSVSG------DVACASEVMQAKD--VDLLTFAKHWGNFALRQF 308
[Close]
BLAST of mRNA_L-elsbetiae_contig6981.15762.1 vs. uniprot
Match: A0A7S2F347_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2F347_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 6.180e-5
Identity = 29/67 (43.28%), Postives = 36/67 (53.73%), Query Frame = 2 
Query:  179 SIDHCNWFTMFRHPVSRLVSAYYFYCKTPSHRNHNLIPKVCGSEGALNDDGASDLHAFAEHWGNFGL 379
            S   C W T++RHPVSRL+SA   YCK  SH        +CGS   L    A +   +A +WGNF L
Sbjct:   72 SYSRCIWLTVYRHPVSRLISAM-LYCKQRSH------DPLCGSYPELYWSTAEE---WASYWGNFNL 128
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6981.15762.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7FS84_ECTSI5.530e-2040.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JY77_9PHAE2.390e-1740.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQY7_9PHAE5.050e-1533.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G715_ECTSI6.040e-1548.28Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JNJ0_9PHAE1.330e-1337.01Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FWQ3_ECTSI1.130e-1041.76Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G716_ECTSI1.840e-940.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2F347_9STRA6.180e-543.28Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6981contigL-elsbetiae_contig6981:1929..4816 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score78.6
Seed ortholog evalue2.4e-12
Seed eggNOG ortholog2880.D7G715
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Sulfotransferase family
EggNOG OGs2CYGC@1,2S47N@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-05_005000.1
Exons3
Model size390
Cds size384
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6981.15762.1prot_L-elsbetiae_contig6981.15762.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6981 1933..4816 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816773.9214542-UTR-L-elsbetiae_contig6981:1928..19321622816773.9214542-UTR-L-elsbetiae_contig6981:1928..1932Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6981 1929..1932 +
1691683802.7747638-UTR-L-elsbetiae_contig6981:1928..19321691683802.7747638-UTR-L-elsbetiae_contig6981:1928..1932Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6981 1929..1932 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816773.9343765-CDS-L-elsbetiae_contig6981:1932..21441622816773.9343765-CDS-L-elsbetiae_contig6981:1932..2144Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6981 1933..2144 +
1691683802.7868521-CDS-L-elsbetiae_contig6981:1932..21441691683802.7868521-CDS-L-elsbetiae_contig6981:1932..2144Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6981 1933..2144 +
1622816773.944983-CDS-L-elsbetiae_contig6981:4113..41561622816773.944983-CDS-L-elsbetiae_contig6981:4113..4156Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6981 4114..4156 +
1691683802.7990968-CDS-L-elsbetiae_contig6981:4113..41561691683802.7990968-CDS-L-elsbetiae_contig6981:4113..4156Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6981 4114..4156 +
1622816773.9567218-CDS-L-elsbetiae_contig6981:4687..48161622816773.9567218-CDS-L-elsbetiae_contig6981:4687..4816Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6981 4688..4816 +
1691683802.809754-CDS-L-elsbetiae_contig6981:4687..48161691683802.809754-CDS-L-elsbetiae_contig6981:4687..4816Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6981 4688..4816 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6981.15762.1

>prot_L-elsbetiae_contig6981.15762.1 ID=prot_L-elsbetiae_contig6981.15762.1|Name=mRNA_L-elsbetiae_contig6981.15762.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=128bp
MLRNYKGPSEELRIGLYSNAEYLQGPQEAKAFLEKDLDLIIGGCTEGLRR
HPSPDPDRSIDHCNWFTMFRHPVSRLVSAYYFYCKTPSHRNHNLIPKVCG
SEGALNDDGASDLHAFAEHWGNFGLLEF
back to top

mRNA from alignment at L-elsbetiae_contig6981:1929..4816+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6981.15762.1 ID=mRNA_L-elsbetiae_contig6981.15762.1|Name=mRNA_L-elsbetiae_contig6981.15762.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2888bp|location=Sequence derived from alignment at L-elsbetiae_contig6981:1929..4816+ (Laminarionema elsbetiae ELsaHSoW15)
GAAAATGCTCCGCAACTACAAGGGTCCATCGGAAGAGCTGAGGATTGGTT
TGTACAGCAACGCGGAGTACCTCCAGGGCCCCCAAGAAGCGAAGGCGTTT
CTTGAGAAAGACCTTGACCTAATCATCGGTGGCTGCACCGAAGGTCTTCG
ACGCCACCCTTCACCGGATCCCGATCGGTCCATCGACCACTGCAATTGGT
TCACCATGTTTCGTCAGTAAGTAAAAGCGTGTTGTTATTATTTTAGCCCA
TGATAATAAAAACACCAGCACACACACCGGGAGGCCTCCGACACCGCGTC
GTTGTGGCGGGGCACGCTGTTGATGGCCCTACACCCAGGGGTAGCTCATT
GCGAACCTCCAGGAAGTTGCACTTCGTCCAAGTTTCCACATCGCTAAGAA
CTCAGCAATAACTACTTGTTTTGTGAGGGATGCTTGTTTTGTGAGGGATG
CGATCTCGAGCGTTCATAACGAAACTGTATTGATTATCGTGCCATCCGAC
AAATAAGCACAGACAAGGGGGGGGCAACAGGGCCCCCGCGCCTCCTGTAG
GCGGCACTGGGGCCAGACCCAGAAGTCTGATTCGGAGGTGAAGAGGTTGA
GATGGTTCGAGGTACGAAACAATAGACCAAGAACACAGTTTGGTGTGCTC
GTAGTCGGGAGGAGTCTCTTATTCCTCTCTTTCCCCTCACAGTCATCATA
ATACCTTATTCAGCCGCCATTCCCACCTCGACACGGCGCGGGATTCGTCT
CAGACCTCCTTCGGTATAAGCTGGCCCTCTCTTGTAGACTATTACATACA
TAACTCAGCAATTACTTATGTACCGTTCTGACCATTCGACGATTGATTGC
ACTCTGAGTTACGGCGTCGTATAATACAATTTATATCGGCGTGCGTGCGT
ATTTATGAATGTGTACTTGCTTGTAGGGCTCGCTTGGACGTCATACAAAT
AAATGCCATCTCGTGTGTAGGAACGACTTGATTTTCGAATGTATTCATTT
CATAAAACCAAACGGAGTCAGTCCCGTCTCAAATGCGGGCTATGTTCCGT
TTTTGGATACCTGATTTATCTTTCAAAACCTGTAATTTTAACCATCCGAT
ACACTGCTCTCTAATTCCTAGAAGTATGCATACGTCGGTAGACAATCTTG
TAAATATTATATCACTAGAGGAAAAGACAGCCCCCCACCGCCAAATGCGG
GTGCCGGGGCCCGACTGGCAAATAATGAAAGGTAGGAGTAAGTATTTTGT
CGTGTGCATAAATGCCGCGACTACCGGGATGAGTACACAACACCAGCGAT
TGTTCTGACGAAAAAAAGAAAATAGTCTATATTTCACAGACACACCCCCG
GGCGTGTTGGAATGTTTTCACTTGAAAATATGATACCTGGGAATGGCCAG
AAATGAAAGATAGAGAGGAATGAAACGTATTGAAGTTTTTATTTTGCATG
AAGTTTTTGTTTTGCATGTTTAGGCACAATACGAAGAGACGAAAAACGCC
CTGTTGGTACTGTCACGTTAGTTATTTACAGACTCACTCACGGAGGAGCC
ATTGCATTTAACTTATGAGCTTAGATTGAGAAGTTCATTCACTCTTCGGC
ACGAAATTGCGACGAAACACGCCGTCGTGGCATAGAAAAAAAACGAGAAG
CATCATCAAGAGTGTGGAGAGGATAACGCGCACGGCATAATAAGAAGACG
TGAACCGCATGGAGGTCAATCCGACGATGGATAGCCACGCAGACAACCAA
CTATGGAAAACAGTATCGTTGAAATATATGAAGTCGAGATCCTCTCGTCC
AATATTATGTGCCAAGAACACACGCAGATGATAGGAACAGAGGCGAAAAT
GGAACCATAATTGTAAGCCCTGGTTTGTTTGCGGAACTTTATCGCCGACG
CGTCGCCAGAACTGTACAGCTCCTGAAGGGTTTGAGGGAGTGCCGGTAAT
TTAGGTAGTACGAAGTTGCCGTTTTTGCAGCATTTACCTCTGGATTCCTT
CGCGAAGAGCTTCGCTCCACAATGTTTGCACGGGTCTCCGTCCATTATCG
TTACGCCAAGGCGACTATGTACAGCATTCAGAGCGTCTCTTCGGCAGCTA
ACAACAGATTAGGTAGATACCCCGACAACGCTTTTTACATACTCTTTCTT
GCTCGTCCGTCGCCTTCCCCCTGCGCCTACTGCAGCCCGGTTTCCCGTCT
GGTATCGGCCTACTACTTCTATTGCAAGGTATCTAAAGAACACGCCCAAT
TGGCGAGAGATGTGCTCGTATGCGTCATGTTCTCAAGTCTTTTTATTTTC
TGGGTCACTGCGCAGTGATATGCCGTCACTGCGCAGTCACTGGATATTGC
TAGACAATGATCGCCTGGGGGATAGTTTAAGTATATATGAATGCGCATGC
CTAATTCCCGGGCAATATGCAATGATTTGGCAAAGGTTGGATGATTGTAG
ACAGCTGGTGATGTAGCACTTGATTATTTCTATAGCTATCTGGGGGGCGC
ATAGCTAGGTCGATCAAACCAGCAACCCTAATCGTACGATCTGCTGTCTA
TGTACTTTTCGAAACATCAAGCGAAATACATACACAGTATGGAATCATTG
TGTGTCGAGAAGCGTTCGATTGAGTGTGTTATGACGATGTGAACCACCTT
GTATGTTTAGACGATGTGATCCACTGAGTCGTGACATAGTTTTCCCTGCT
CTGCCCCACAACGCTGATCCGCGTCTGGTCTTATATTGACTGGGCATCGT
GCGGCATAGACCCCCAGTCATCGCAATCATAATTTGATCCCCAAAGTTTG
TGGATCAGAAGGAGCCTTAAACGATGATGGCGCATCAGATCTACATGCGT
TCGCCGAGCACTGGGGGAACTTCGGTCTACTTGAATTC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig6981:1929..4816+

>mRNA_L-elsbetiae_contig6981.15762.1 ID=mRNA_L-elsbetiae_contig6981.15762.1|Name=mRNA_L-elsbetiae_contig6981.15762.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=768bp|location=Sequence derived from alignment at L-elsbetiae_contig6981:1929..4816+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCTCCGCAACTACAAGGGTCCATCGGAAGAGCTGAGGATTGGTTTGTA
CAGCAACGCGGAGTACCTCCAGGGCCCCCAAGAAGCGAAGGCGTTTCTTG
AGAAAGACCTTGACCTAATCATCGGTGGCTGCACCGAAGGTCTTCGACGC
CACCCTTCACCGGATCCCGATCGGTCCATCGACCACTGCAATTGGTTCAC
CATGTTTCGTCAATGCTCCGCAACTACAAGGGTCCATCGGAAGAGCTGAG
GATTGGTTTGTACAGCAACGCGGAGTACCTCCAGGGCCCCCAAGAAGCGA
AGGCGTTTCTTGAGAAAGACCTTGACCTAATCATCGGTGGCTGCACCGAA
GGTCTTCGACGCCACCCTTCACCGGATCCCGATCGGTCCATCGACCACTG
CAATTGGTTCACCATGTTTCGTCACCCGGTTTCCCGTCTGGTATCGGCCT
ACTACTTCTATTGCAAGCCCGGTTTCCCGTCTGGTATCGGCCTACTACTT
CTATTGCAAGACCCCCAGTCATCGCAATCATAATTTGATCCCCAAAGTTT
GTGGATCAGAAGGAGCCTTAAACGATGATGGCGCATCAGATCTACATGCG
TTCGCCGAGCACTGGGGGAACTTCGGTCTACTTGAATTCACCCCCAGTCA
TCGCAATCATAATTTGATCCCCAAAGTTTGTGGATCAGAAGGAGCCTTAA
ACGATGATGGCGCATCAGATCTACATGCGTTCGCCGAGCACTGGGGGAAC
TTCGGTCTACTTGAATTC
back to top