prot_L-elsbetiae_contig6973.15751.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig6973.15751.1
Unique Nameprot_L-elsbetiae_contig6973.15751.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length169
Homology
BLAST of mRNA_L-elsbetiae_contig6973.15751.1 vs. uniprot
Match: A0A6H5KLB8_9PHAE (IBR domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLB8_9PHAE)

HSP 1 Score: 193 bits (490), Expect = 2.630e-58
Identity = 94/157 (59.87%), Postives = 108/157 (68.79%), Query Frame = 0
Query:   12 GGRCALGHGLCADCTTQYVEKTLLPRGIVWWDTIKCVLPECAEFMHGVSVRRCISRELVERIDAAQLELVPNLGPEARRERERAAEVARLERASRAAEHRVSEAHVAETTVPCPACGAPSIKIDGCKHVRCTCLHEYCWDCLCNWVTGHMSVTCARP 168
            G  CA GH LCA CTTQYV +TLLP GIVWWD I+CV PEC   M G+SV+ C+  +L   IDAAQLE+VPN+GPEARRERERAA         R AE R S A VA++T  CP CG  + KI GCKH++C C H YCWDCL  W  GH+SV CA P
Sbjct:  161 GSWCAFGHALCAKCTTQYVGETLLPWGIVWWDRIRCVDPECDAHMVGLSVQLCLDSDLRSHIDAAQLEVVPNIGPEARRERERAA---------RTAEDRASVATVAKSTKRCPNCGVATEKIGGCKHIKCRCRHGYCWDCLIEWKPGHLSVPCAPP 308          
BLAST of mRNA_L-elsbetiae_contig6973.15751.1 vs. uniprot
Match: D8LB34_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB34_ECTSI)

HSP 1 Score: 192 bits (489), Expect = 2.190e-57
Identity = 97/157 (61.78%), Postives = 107/157 (68.15%), Query Frame = 0
Query:   12 GGRCALGHGLCADCTTQYVEKTLLPRGIVWWDTIKCVLPECAEFMHGVSVRRCISRELVERIDAAQLELVPNLGPEARRERERAAEVARLERASRAAEHRVSEAHVAETTVPCPACGAPSIKIDGCKHVRCTCLHEYCWDCLCNWVTGHMSVTCARP 168
            G  CA GH LCA+CTTQYVEKTLLP GIVWWD IKCV PEC   M G+SV+ C+  +L   IDAAQLE+VPN+GPEARRERERAA         R AE R S A VA TT PCP CG  + K  GCKH+ CTC HEYCWDC   W +GH    CA P
Sbjct:  228 GSWCASGHALCAECTTQYVEKTLLPWGIVWWDRIKCVDPECDAHMVGLSVQGCLGSDLRSHIDAAQLEVVPNIGPEARRERERAA---------RTAEDRESAATVATTTKPCPNCGVATEKNGGCKHITCTCSHEYCWDCRMAWKSGHRCA-CAPP 374          
BLAST of mRNA_L-elsbetiae_contig6973.15751.1 vs. uniprot
Match: D8LB33_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB33_ECTSI)

HSP 1 Score: 164 bits (415), Expect = 7.320e-44
Identity = 90/184 (48.91%), Postives = 103/184 (55.98%), Query Frame = 0
Query:    4 PQSGEDLQGGRCALGHGLC--------------------ADCTTQYVEKTLLPRGIVWWDTIKCVLPECAEFMHGVSVRRCISRELVERIDAAQLELVPNLGPEARRERERAAEVARLERASRAAEHRVSEAHVAETTVPCPACGAPSIKIDGCKHVRCT-CLHEYCWDCLCNWVTGHMSVTCA 166
            P S     G  C L H LC                    ADCTTQYVEKTLLPRG VWWD I+CV P+C   M G+SV+RC+  +L  RIDAAQL++VP +GPEAR ERERAA         R  E R S   VA TT PCP C   + K  GCKH+ C+ C HEYCW C   W  GH+  TC 
Sbjct:  689 PTSETSSSGTECVLFHELCENMVTDSRXXXXXXXXXXXXADCTTQYVEKTLLPRGTVWWDRIRCVDPDCDAHMVGLSVQRCLGSDLRSRIDAAQLDVVPMIGPEARHERERAA---------RTPEDRASATTVATTTKPCPNCEVATEKNKGCKHMVCSMCNHEYCWICRSEWTPGHLRDTCV 863          
BLAST of mRNA_L-elsbetiae_contig6973.15751.1 vs. uniprot
Match: U1GRW5_ENDPU (RING-type domain-containing protein n=1 Tax=Endocarpon pusillum (strain Z07020 / HMAS-L-300199) TaxID=1263415 RepID=U1GRW5_ENDPU)

HSP 1 Score: 67.8 bits (164), Expect = 4.160e-10
Identity = 26/50 (52.00%), Postives = 33/50 (66.00%), Query Frame = 0
Query:  117 VAETTVPCPACGAPSIKIDGCKHVRCTCLHEYCWDCLCNWVTGHMSVTCA 166
            VA+TT PCP C AP  K  GCKH++C C  E+C+ CL  W T H+S  C+
Sbjct:  388 VAQTTKPCPRCKAPVEKTGGCKHIKCRCGFEFCYGCLAEWSTEHLSTPCS 437          
BLAST of mRNA_L-elsbetiae_contig6973.15751.1 vs. uniprot
Match: A0A8H3ZZT5_GIGMA (Ring finger protein n=1 Tax=Gigaspora margarita TaxID=4874 RepID=A0A8H3ZZT5_GIGMA)

HSP 1 Score: 62.4 bits (150), Expect = 2.450e-8
Identity = 27/57 (47.37%), Postives = 36/57 (63.16%), Query Frame = 0
Query:  113 SEAHVAETTVPCPACGAPSIKIDGCKHVRC---TCLHEYCWDCLCNWVTGHMSVTCA 166
            S+ ++ + T PCP CG    KIDGC HV+C   +CL E+CW CL +W+ G    TCA
Sbjct:  157 SQTYLEKNTKPCPKCGIHIQKIDGCDHVKCKIDSCLMEFCWLCLGDWLKGEHLRTCA 213          
BLAST of mRNA_L-elsbetiae_contig6973.15751.1 vs. uniprot
Match: T1KBN8_TETUR (E3 ubiquitin-protein ligase parkin n=1 Tax=Tetranychus urticae TaxID=32264 RepID=T1KBN8_TETUR)

HSP 1 Score: 53.5 bits (127), Expect = 3.100e-5
Identity = 19/46 (41.30%), Postives = 28/46 (60.87%), Query Frame = 0
Query:  117 VAETTVPCPACGAPSIKIDGCKHVRCTCLHEYCWDCLCNWVTGHMS 162
            +A  + PCP CG P+ + DGC H+ C C +++CW C   W T  M+
Sbjct:  430 IAMISKPCPKCGVPTERSDGCMHMICKCNYDWCWICHSGWTTDCMA 475          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6973.15751.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5KLB8_9PHAE2.630e-5859.87IBR domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LB34_ECTSI2.190e-5761.78RING-type domain-containing protein n=1 Tax=Ectoca... [more]
D8LB33_ECTSI7.320e-4448.91RING-type domain-containing protein n=1 Tax=Ectoca... [more]
U1GRW5_ENDPU4.160e-1052.00RING-type domain-containing protein n=1 Tax=Endoca... [more]
A0A8H3ZZT5_GIGMA2.450e-847.37Ring finger protein n=1 Tax=Gigaspora margarita Ta... [more]
T1KBN8_TETUR3.100e-541.30E3 ubiquitin-protein ligase parkin n=1 Tax=Tetrany... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002867IBR domainSMARTSM00647ibrneu5coord: 102..165
e-value: 0.0061
score: 25.8
IPR002867IBR domainPFAMPF01485IBRcoord: 118..165
e-value: 2.3E-7
score: 30.9
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 3..81
e-value: 2.5E-5
score: 26.2
NoneNo IPR availableGENE3D1.20.120.1750coord: 96..167
e-value: 3.2E-10
score: 42.2
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 113..166
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 144..153

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6973contigL-elsbetiae_contig6973:6908..7414 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6973.15751.1mRNA_L-elsbetiae_contig6973.15751.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig6973 6108..7431 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig6973.15751.1 ID=prot_L-elsbetiae_contig6973.15751.1|Name=mRNA_L-elsbetiae_contig6973.15751.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=169bp
MNDPQSGEDLQGGRCALGHGLCADCTTQYVEKTLLPRGIVWWDTIKCVLP
ECAEFMHGVSVRRCISRELVERIDAAQLELVPNLGPEARRERERAAEVAR
LERASRAAEHRVSEAHVAETTVPCPACGAPSIKIDGCKHVRCTCLHEYCW
DCLCNWVTGHMSVTCARP*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002867IBR_dom
IPR013083Znf_RING/FYVE/PHD
IPR017907Znf_RING_CS