mRNA_L-elsbetiae_contig6973.15751.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6973.15751.1
Unique NamemRNA_L-elsbetiae_contig6973.15751.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6973.15751.1 vs. uniprot
Match: A0A6H5KLB8_9PHAE (IBR domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLB8_9PHAE)

HSP 1 Score: 194 bits (492), Expect = 5.600e-58
Identity = 97/180 (53.89%), Postives = 116/180 (64.44%), Query Frame = 2 
Query:   68 LQDVRCILCDCEMNDPQSGEDLQGGRCALGHGLCADCTTQYVEKTLLPRGIVWWDTIKCVLPECAEFMHGVSVRRCISRELVERIDAAQLELVPNLGPEARRERERAAEVARLERASRAAEHRVSEAHVAETTVPCPACGAPSIKIDGCKHVRCTCLHEYCWDCLCNWVTGHMSVTCARP 607
            +   +C+  D E+ +        G  CA GH LCA CTTQYV +TLLP GIVWWD I+CV PEC   M G+SV+ C+  +L   IDAAQLE+VPN+GPEARRERERAA         R AE R S A VA++T  CP CG  + KI GCKH++C C H YCWDCL  W  GH+SV CA P
Sbjct:  139 MSSAKCVFFD-ELCENIVTNSKTGSWCAFGHALCAKCTTQYVGETLLPWGIVWWDRIRCVDPECDAHMVGLSVQLCLDSDLRSHIDAAQLEVVPNIGPEARRERERAA---------RTAEDRASVATVAKSTKRCPNCGVATEKIGGCKHIKCRCRHGYCWDCLIEWKPGHLSVPCAPP 308
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BLAST of mRNA_L-elsbetiae_contig6973.15751.1 vs. uniprot
Match: D8LB34_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB34_ECTSI)

HSP 1 Score: 194 bits (494), Expect = 1.670e-57
Identity = 107/209 (51.20%), Postives = 130/209 (62.20%), Query Frame = 2 
Query:    2 GTRHRVGICLREA-GKIEEAKDF--LQDVRCI----LCDCEMNDPQSGEDLQGGRCALGHGLCADCTTQYVEKTLLPRGIVWWDTIKCVLPECAEFMHGVSVRRCISRELVERIDAAQLELVPNLGPEARRERERAAEVARLERASRAAEHRVSEAHVAETTVPCPACGAPSIKIDGCKHVRCTCLHEYCWDCLCNWVTGHMSVTCARP 607
            G RH  G+    + G    A +F  +   +C+    +C+  +++P++G       CA GH LCA+CTTQYVEKTLLP GIVWWD IKCV PEC   M G+SV+ C+  +L   IDAAQLE+VPN+GPEARRERERAA         R AE R S A VA TT PCP CG  + K  GCKH+ CTC HEYCWDC   W +GH    CA P
Sbjct:  181 GGRHNRGLPRTGSIGSACPAGNFTNMSSAKCVFFSEMCENIVSNPKTGS-----WCASGHALCAECTTQYVEKTLLPWGIVWWDRIKCVDPECDAHMVGLSVQGCLGSDLRSHIDAAQLEVVPNIGPEARRERERAA---------RTAEDRESAATVATTTKPCPNCGVATEKNGGCKHITCTCSHEYCWDCRMAWKSGHRCA-CAPP 374
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BLAST of mRNA_L-elsbetiae_contig6973.15751.1 vs. uniprot
Match: D8LB33_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB33_ECTSI)

HSP 1 Score: 164 bits (414), Expect = 4.090e-43
Identity = 90/183 (49.18%), Postives = 103/183 (56.28%), Query Frame = 2 
Query:  113 PQSGEDLQGGRCALGHGLC--------------------ADCTTQYVEKTLLPRGIVWWDTIKCVLPECAEFMHGVSVRRCISRELVERIDAAQLELVPNLGPEARRERERAAEVARLERASRAAEHRVSEAHVAETTVPCPACGAPSIKIDGCKHVRCT-CLHEYCWDCLCNWVTGHMSVTC 598
            P S     G  C L H LC                    ADCTTQYVEKTLLPRG VWWD I+CV P+C   M G+SV+RC+  +L  RIDAAQL++VP +GPEAR ERERAA         R  E R S   VA TT PCP C   + K  GCKH+ C+ C HEYCW C   W  GH+  TC
Sbjct:  689 PTSETSSSGTECVLFHELCENMVTDSRXXXXXXXXXXXXADCTTQYVEKTLLPRGTVWWDRIRCVDPDCDAHMVGLSVQRCLGSDLRSRIDAAQLDVVPMIGPEARHERERAA---------RTPEDRASATTVATTTKPCPNCEVATEKNKGCKHMVCSMCNHEYCWICRSEWTPGHLRDTC 862
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BLAST of mRNA_L-elsbetiae_contig6973.15751.1 vs. uniprot
Match: U1GRW5_ENDPU (RING-type domain-containing protein n=1 Tax=Endocarpon pusillum (strain Z07020 / HMAS-L-300199) TaxID=1263415 RepID=U1GRW5_ENDPU)

HSP 1 Score: 66.6 bits (161), Expect = 2.800e-9
Identity = 26/50 (52.00%), Postives = 33/50 (66.00%), Query Frame = 2 
Query:  452 VAETTVPCPACGAPSIKIDGCKHVRCTCLHEYCWDCLCNWVTGHMSVTCA 601
            VA+TT PCP C AP  K  GCKH++C C  E+C+ CL  W T H+S  C+
Sbjct:  388 VAQTTKPCPRCKAPVEKTGGCKHIKCRCGFEFCYGCLAEWSTEHLSTPCS 437
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BLAST of mRNA_L-elsbetiae_contig6973.15751.1 vs. uniprot
Match: A0A8H3ZZT5_GIGMA (Ring finger protein n=1 Tax=Gigaspora margarita TaxID=4874 RepID=A0A8H3ZZT5_GIGMA)

HSP 1 Score: 61.2 bits (147), Expect = 1.460e-7
Identity = 27/57 (47.37%), Postives = 36/57 (63.16%), Query Frame = 2 
Query:  440 SEAHVAETTVPCPACGAPSIKIDGCKHVRC---TCLHEYCWDCLCNWVTGHMSVTCA 601
            S+ ++ + T PCP CG    KIDGC HV+C   +CL E+CW CL +W+ G    TCA
Sbjct:  157 SQTYLEKNTKPCPKCGIHIQKIDGCDHVKCKIDSCLMEFCWLCLGDWLKGEHLRTCA 213
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6973.15751.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KLB8_9PHAE5.600e-5853.89IBR domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LB34_ECTSI1.670e-5751.20RING-type domain-containing protein n=1 Tax=Ectoca... [more]
D8LB33_ECTSI4.090e-4349.18RING-type domain-containing protein n=1 Tax=Ectoca... [more]
U1GRW5_ENDPU2.800e-952.00RING-type domain-containing protein n=1 Tax=Endoca... [more]
A0A8H3ZZT5_GIGMA1.460e-747.37Ring finger protein n=1 Tax=Gigaspora margarita Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6973contigL-elsbetiae_contig6973:6108..7431 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score194.5
Seed ortholog evalue4e-47
Seed eggNOG ortholog2880.D8LB34
KEGG koko:K11967,ko:K11973,ko:K11977
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ubiquitin conjugating enzyme binding
EggNOG OGsKOG1815@1,KOG1815@2759
EC2.3.2.31
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04121
Exons2
Model size627
Cds size507
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6973.15751.1prot_L-elsbetiae_contig6973.15751.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6973 6908..7414 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816772.8030543-UTR-L-elsbetiae_contig6973:6107..61591622816772.8030543-UTR-L-elsbetiae_contig6973:6107..6159Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6973 6108..6159 +
1691683801.9370093-UTR-L-elsbetiae_contig6973:6107..61591691683801.9370093-UTR-L-elsbetiae_contig6973:6107..6159Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6973 6108..6159 +
1622816772.8190894-UTR-L-elsbetiae_contig6973:6856..69071622816772.8190894-UTR-L-elsbetiae_contig6973:6856..6907Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6973 6857..6907 +
1691683801.9566424-UTR-L-elsbetiae_contig6973:6856..69071691683801.9566424-UTR-L-elsbetiae_contig6973:6856..6907Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6973 6857..6907 +
1622816772.8457427-UTR-L-elsbetiae_contig6973:7414..74311622816772.8457427-UTR-L-elsbetiae_contig6973:7414..7431Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6973 7415..7431 +
1691683801.9866285-UTR-L-elsbetiae_contig6973:7414..74311691683801.9866285-UTR-L-elsbetiae_contig6973:7414..7431Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6973 7415..7431 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816772.8318217-CDS-L-elsbetiae_contig6973:6907..74141622816772.8318217-CDS-L-elsbetiae_contig6973:6907..7414Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6973 6908..7414 +
1691683801.9736297-CDS-L-elsbetiae_contig6973:6907..74141691683801.9736297-CDS-L-elsbetiae_contig6973:6907..7414Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6973 6908..7414 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6973.15751.1

>prot_L-elsbetiae_contig6973.15751.1 ID=prot_L-elsbetiae_contig6973.15751.1|Name=mRNA_L-elsbetiae_contig6973.15751.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=169bp
MNDPQSGEDLQGGRCALGHGLCADCTTQYVEKTLLPRGIVWWDTIKCVLP
ECAEFMHGVSVRRCISRELVERIDAAQLELVPNLGPEARRERERAAEVAR
LERASRAAEHRVSEAHVAETTVPCPACGAPSIKIDGCKHVRCTCLHEYCW
DCLCNWVTGHMSVTCARP*
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mRNA from alignment at L-elsbetiae_contig6973:6108..7431+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6973.15751.1 ID=mRNA_L-elsbetiae_contig6973.15751.1|Name=mRNA_L-elsbetiae_contig6973.15751.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1324bp|location=Sequence derived from alignment at L-elsbetiae_contig6973:6108..7431+ (Laminarionema elsbetiae ELsaHSoW15)
CGGCACTCGGCATCGCGTCGGAATATGCTTGCGAGAGGCAGGGAAAATTG
AGGTACGAAACGCCTCGGCGTCGTTGATTGGTTAGAATAACGACCGTTGA
ATCCTGGATAGGTTTGTGCAAGCTAATTACGGTATTTTCTTGCTATTGAG
AGCGCACAAACATGCACCACTATTATAGTACGAGTCAGGAAGGAAACATC
GGTCCAAGGTTTGTTATCTTGTTATTCGTTAGCTTCAAGTTGTCAGCACC
CATAGCACATGGTACAAGGCCCCATGTTGTTCCTGCGGTGTGATGAAAAT
TCAAATAACGTATTTCCGGCTTTGTCTAAAAATCCTGTACACGAAGTATA
TTGGTCTGTGGTTCAAAACTTTGTCTCATAATGGGTTCTTACCTTACTCA
CCTCGACCGAGGTGTATTGTGCAGTTTCGGGAGAGACAACATATATTCAA
CAAAAATGGTTTAGAAAAAGGCAATGCCGGAACGGCAGAAACAAACTAAA
TCCGGTACAGGGTGAAGGTTTGGTCAAAATCCCCCCTCCGAATGCTTCTC
CGTGAATTTATTTATTGTTGTCTTGTATAGGTGGTCAATTGGCCAATAGC
ACTCACAGTGGACGACACGCAACAGCTAAATAGTATGCATTTCTTCATGT
TGATCTAAAATTACCAGAAAACTCCTGTATATACGCCGTCACCTGACCCC
AACGACTTTGTCATGCATTCGGCGGCGCCTGCGCGTGGCTGTCCCTCAGG
AAGCAAAGGATTTTCTTCAGGATGTCCGGTGCATCCTGTGCGATTGTGAG
ATGAACGACCCCCAATCTGGGGAAGACCTTCAGGGGGGGCGGTGTGCTCT
CGGACATGGTCTTTGTGCCGATTGTACCACTCAATACGTCGAAAAGACGC
TCCTGCCGCGGGGTATCGTTTGGTGGGACACGATCAAGTGCGTGCTTCCA
GAATGCGCCGAGTTCATGCACGGGGTAAGCGTTCGGCGTTGCATCAGTCG
AGAACTTGTGGAGCGCATCGATGCTGCCCAGCTTGAACTCGTGCCTAACC
TTGGGCCGGAAGCCAGGCGCGAACGTGAACGTGCGGCGGAGGTGGCCAGG
CTTGAACGTGCGTCACGGGCAGCCGAGCATCGTGTGTCAGAAGCCCACGT
GGCTGAGACTACTGTGCCGTGTCCGGCATGTGGGGCACCATCTATTAAGA
TCGACGGGTGCAAGCACGTCAGATGTACTTGCTTGCATGAATACTGTTGG
GACTGTTTGTGCAACTGGGTGACTGGGCACATGAGTGTTACGTGTGCGCG
GCCGTGAGGCGGGATGAAATGTGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6973:6108..7431+

>mRNA_L-elsbetiae_contig6973.15751.1 ID=mRNA_L-elsbetiae_contig6973.15751.1|Name=mRNA_L-elsbetiae_contig6973.15751.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1014bp|location=Sequence derived from alignment at L-elsbetiae_contig6973:6108..7431+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAACGACCCCCAATCTGGGGAAGACCTTCAGGGGGGGCGGTGTGCTCT
CGGACATGGTCTTTGTGCCGATTGTACCACTCAATACGTCGAAAAGACGC
TCCTGCCGCGGGGTATCGTTTGGTGGGACACGATCAAGTGCGTGCTTCCA
GAATGCGCCGAGTTCATGCACGGGGTAAGCGTTCGGCGTTGCATCAGTCG
AGAACTTGTGGAGCGCATCGATGCTGCCCAGCTTGAACTCGTGCCTAACC
TTGGGCCGGAAGCCAGGCGCGAACGTGAACGTGCGGCGGAGGTGGCCAGG
CTTGAACGTGCGTCACGGGCAGCCGAGCATCGTGTGTCAGAAGCCCACGT
GGCTGAGACTACTGTGCCGTGTCCGGCATGTGGGGCACCATCTATTAAGA
TCGACGGGTGCAAGCACGTCAGATGTACTTGCTTGCATGAATACTGTTGG
GACTGTTTGTGCAACTGGGTGACTGGGCACATGAGTGTTACGTGTGCGCG
GCCGTGAATGAACGACCCCCAATCTGGGGAAGACCTTCAGGGGGGGCGGT
GTGCTCTCGGACATGGTCTTTGTGCCGATTGTACCACTCAATACGTCGAA
AAGACGCTCCTGCCGCGGGGTATCGTTTGGTGGGACACGATCAAGTGCGT
GCTTCCAGAATGCGCCGAGTTCATGCACGGGGTAAGCGTTCGGCGTTGCA
TCAGTCGAGAACTTGTGGAGCGCATCGATGCTGCCCAGCTTGAACTCGTG
CCTAACCTTGGGCCGGAAGCCAGGCGCGAACGTGAACGTGCGGCGGAGGT
GGCCAGGCTTGAACGTGCGTCACGGGCAGCCGAGCATCGTGTGTCAGAAG
CCCACGTGGCTGAGACTACTGTGCCGTGTCCGGCATGTGGGGCACCATCT
ATTAAGATCGACGGGTGCAAGCACGTCAGATGTACTTGCTTGCATGAATA
CTGTTGGGACTGTTTGTGCAACTGGGTGACTGGGCACATGAGTGTTACGT
GTGCGCGGCCGTGA
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