mRNA_L-elsbetiae_contig6966.15739.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6966.15739.1
Unique NamemRNA_L-elsbetiae_contig6966.15739.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6966.15739.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6966contigL-elsbetiae_contig6966:398..5962 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size262
Cds size183
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6966.15739.1prot_L-elsbetiae_contig6966.15739.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6966 398..5885 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816771.7046723-CDS-L-elsbetiae_contig6966:397..4931622816771.7046723-CDS-L-elsbetiae_contig6966:397..493Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6966 398..493 +
1691683801.1792464-CDS-L-elsbetiae_contig6966:397..4931691683801.1792464-CDS-L-elsbetiae_contig6966:397..493Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6966 398..493 +
1622816771.717233-CDS-L-elsbetiae_contig6966:5798..58851622816771.717233-CDS-L-elsbetiae_contig6966:5798..5885Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6966 5799..5885 +
1691683801.1929977-CDS-L-elsbetiae_contig6966:5798..58851691683801.1929977-CDS-L-elsbetiae_contig6966:5798..5885Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6966 5799..5885 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816771.7296178-UTR-L-elsbetiae_contig6966:5885..59621622816771.7296178-UTR-L-elsbetiae_contig6966:5885..5962Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6966 5886..5962 +
1691683801.2031107-UTR-L-elsbetiae_contig6966:5885..59621691683801.2031107-UTR-L-elsbetiae_contig6966:5885..5962Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6966 5886..5962 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6966.15739.1

>prot_L-elsbetiae_contig6966.15739.1 ID=prot_L-elsbetiae_contig6966.15739.1|Name=mRNA_L-elsbetiae_contig6966.15739.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=61bp
SQVHATARTAAPGPCFPFCLLSTRDTPREGVEECSRKQLHSTLAALSGRA
PGRCCLARRV*
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mRNA from alignment at L-elsbetiae_contig6966:398..5962+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6966.15739.1 ID=mRNA_L-elsbetiae_contig6966.15739.1|Name=mRNA_L-elsbetiae_contig6966.15739.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5565bp|location=Sequence derived from alignment at L-elsbetiae_contig6966:398..5962+ (Laminarionema elsbetiae ELsaHSoW15)
AGTCAGGTGCACGCAACGGCACGCACGGCAGCGCCTGGACCCTGCTTTCC
CTTCTGTCTCCTGTCTACAAGAGATACTCCCAGAGAAGGAGTGGAGGTGC
GTGTCCATCTGCCTTGATTCGTGTGCTTGAAAGTCTTACAGCGCGTCTGT
CTCGCAGCAGAGCGCCAGCAAATATACCAAATACGAGGAGAATTTGAATT
GCTGACACCGAGATGGACGGAGGCCACTCTCTTCCGGCGAGACCAGAACG
GGACGGGCTCGAGTGCCTTTGAGTGTAGACGCCTGTTTAGTACCTAGTCC
AGAAGTTTACCCTCAGATAATCCCATTAGTTGGAAGGGAGGGGGGAGATC
TCGTGAGTCCTACATACGACGTAACATGTGTGTGACAACGGCGACTCTCG
TCTCTCGTCTCAAACACACGCGAAACTGGACACCCTACAGCTCACAAATC
CATGCATGCATGCCATGAGAGACTTCCGTTGTTTTACTTTCTTTGTCGCG
AGCTGCTCTATGCCTGGCCGACGTATTGCACCTCCCACAAAAACGACTCT
ATTGTATGTTATTTTGTCTTCAAAAATACAAAAATATCTACGATCCCACG
CAGCCCCCGCCGCAACTGATCTTGAACTGATTTAGCGCAGTTATTTCACC
AAAGCTCGTGTTGATCCAAAAATCGGACGCCTACAAGGGGTTTCGATACC
CATCACCAACAGCGGGCCAAAAGTGGCAGATTGATTGGACAAACACAGAG
AGTCCCGGTTCCGTCTACAAATAAAGTTGCTGGACGGACATGGCGAAGGA
ACTTTAACTTTTTCATATCATTTTGGAGTCAGACAAGCGAGGGTGTTGCC
CTTCTCTTGATCAGAGAGGCGGAGTCTGTTTGAGCGCCGCAGAGTTGATC
CAAAAATCGGACACCCAGTGTCCCCTCTATGCTCACATATCTCTACGGTC
GCCGACTTTCAAGCGATTTGGTGCACTCCTGAGCGTGGCGCTCACGATTG
AATTTGCCTCCCCAAGCTGCGAAATTGAGCTGAAAAATACAGCAACTGCT
GCCGCTACTGTCTAGCACCGGCCACACAGCAGCTCTCCTCCCCTAGGACA
AATGGCGGAATAAAGACTCCTTGCGGACGTAGGGAACAGACATCTTGAGG
CCTCCTTCTCTCTTCGTTGCAATCGGTTGTGTGTGCGAGGAGCATCAGCG
GTTATGATGTACATGACCGCATGTATTTAGAGCAAAAAAATCAGGGAGGG
GACACGGAAACAAAAATCCCACTGAACTCGAACGCCTCGCATTTTGAATA
CATTTTTTTTTTGTTGATGGGAGCTGCAACACATGTGGCCCCAATACCTC
TATCTACTATGATCTAGTGTCATTTTGAAGCTTAAGAGTCAAATACCGCT
CTATTTCTTAGTCACGTCACTGCCTGAGCTCTACCCGAGCCCTAGAGGCC
CACATTCTTCGTTTTGCGTGCATCGTTTTTTTTTTTGCGCAGTTTTTTTG
GCATGATGACAAGCTAAATCAACCATGTAACCCTCGCAAATCTCATGATC
TGGCGTGCCCTGTGGGTGGAGCTACGCGCATATGTCTGATTGGCCGAGCC
TGACAGCCTGACTAAAATGAGGTTCACCCGCGTCATCTTTGCCCACGCGA
TGCGTGCCATGGAAATACCTAGATATAGGGTTAGACGTTGGTTAAGTTCT
GTGATTATTAGGTGCTAGGTTGGAGGGCAGGGGTAGGCTAGGCGGAGTGC
GCGCGCGCTTTTGACAGTCCCGCACACGTCACAGATCACAGACCACACAC
CTACCGCCAAAGGGTCAGAATATTCCTAGAACTCGCTCCTGTCGACGATG
TGGTGAGGTAAGGTCACATACGTTGATGTCCACCTTGCTTTGCGGGTGCG
CAGGTTATACCACACTGCATGAATGCGATGCTTGCCTGGGATATATAGTC
TTCATCACACTGTTCTCGATGCACGTACAAGCTCGGGTAGAGGCATGTAC
CTATGTCTGCACGGACGGGTAAATAGCAATGAAGTTCGGAACATATCTAT
ATCATCAGCCTTTTTCTGATGGAGGCGGCCTGCATGCATGTGCAACCGTT
ACATTACGAATATTGAGCTCGGGAGGGTACACATAAGATGGCCTGCTGTC
GTGTAGATATACGCTGTGGATAATATCTGAGAAGATCGCACAGTAGTATG
TAGTGCGGAGAGTTGGATGTATATCTATATGTACGGAGTCTCCATACGCG
AGATACTACATCACAGCAACTACACACTTGGCATTCGATACTTTACAATT
TCCCATGTGTACTCATATGCCAAGGCACATTCTACTGATATCTCAGACGA
AGCATACAGCGTAGCCTGCACCCCTACATCCTCTCATATACTGATTGATA
CTACCCTACGGGGCATACGCGTAGCCTGCACCCCGAGTGCAGGCGAAGCC
CCCTTGTACATTAACAGCAGTACGTGAAATCGTTTTCAAGGGGGCGCATG
TGCGGGAGGGTGTTTTAGGGAGGGACTTCCTGGGACGTAAAACACAGGGC
CTCAGTGTGGGCAGAGATGGAGAGGTCGAAAGCTCAAAAGCTCAGCGAGG
AGGAAATAGTTCAACGCAGGAGTCAGAGCACGCGTGGATAAGGTCCTCGG
CTGCAAAGTAGGACAAAAAGCTAGGCGTTCATCTTTGCAGGGCACTAACT
TTCAGCATTGCTTGACATTCGTACTGAATTAGAAGAGCTCGGACGAGAGA
AAGAGAGAGGGAGAGAGAGAGAGAGAGAGAGAGCGAGTCCGCCAATCCAC
AGCACGTTTTTGGGTGATTTGGGGGCAGAATCAGACGTCAGTAATCCACG
AGGAAATTACACACATCGAAAAGCATACGGTCCCACGTGTTCAGAGCACT
TGTCAAATACCGAAAACCGTCATGCAGGGCACTAACTACAGCTTTGTAGC
TGCTGCTGTCTACTGGTGCTGGCCTCGCCGAGCCCCTCCGTGCGTATTCG
AAGGCAGCTCTGCTTTGACGCTCGCAGAGCGATTCAGGGCCTGAAACCCG
CAACGACGCTAGTCATTACGAGTGGTAGATACCCTCCCCTTTGGTTTGTT
TCGTCCGGGATGAAGAGTGTGAGCTCCAATAGCTGGCGCACCGGTGCGAG
CGTGTGCCCTCGCAGGGTGGGGCTTTTGGTACAGCGGGGGGTCTTTTATT
TTTTGCGTGTTTTCGTCTGCGGGGCCGCTGCAGCAGTTTGCGCTGTGGAC
GCTCTGAATCGTTCGTACTCCGCCCCTGGAGCATCAATGAGCTTCGTGCT
CGGTGCTCCACCCTCGAGACATACCATAGCAATAGGACTGAGCTTGCTTC
GTCACAAAATCTGGACTCAGCGGCGAGCACTTCATCAAGAAATAAATAGC
TCATTTCTGCGCCTCCTTGAAAACGATTTCACAGATCACTGTTGATGGGT
ACTGCTCCAAACCGCAGTTCTTTCTCTTGCAACAGCAGTTAATATGTTAA
TATGTGTATGTAGTAGCCTATTTTCGCCGGCCACACTCGCTACCGTACAC
GACAAGATAACACACCCCCTGGACCGATTTTCAGAGCTCGATTACTCCTC
AACAGGTATGATTCGAGTACATACCAAAAGGACACGTTTTCGGGCAGCTC
TTGGTGAGATCTTTCCAACGCCGCCCTTTGCGGGACGGAACACTCTTCTC
GCTGCGGAGTACTTGAGCTTTGAAAATCGCTCCTCAAGGGGGTGTGTTAT
CTTGTGCCATATACGGTATATCTATGTATCATATGTATGTATGTACCTGT
GTACTACTTAGTCTTAGAAGTATTATCTATCAAGGCGGTGGTGGGGGGTA
CCCATTGATCAGCATAGGCCTTTCTCGAAGAAAAATCGCATACCCCGCTG
AACATCACGGAGCCCCACTTGAAGTTTGTGTGGGATTTCCAAAAATGCCC
GCATGTTCTGACAGAGTTGTTCCGAGACTGCTGTCGGCTCTTTTTTGCCG
TGTTTGCGGAAGAGTTTTTTTAACCCACCCCTTGCGCGTGTGAACTGTAA
AGTACTGCACAAATTTGCTTTGGATACTTCTCTCTATTCCACGCTGTTTC
AAAACAGCCGGGGTACATATATTCGCGTCGAGTCAGCTTGTTGATCGAGG
CAAAAACCACAGCGTGCGGCTCCGGGGGCGTGGACCCAAGTATTCACCCC
GATTGACCGAAAAAAGAGCGGTTCTCGGCATCGTTTCGTCCGCACCATGA
CATCGAAAGCGGCTTCTAGATAGCTTTCTGCAGCTGCTTGCTACCCAGGA
CACGCGGCGGCCCCTACACACCATATCAGTAGGCCCCACCCAGCACCTTG
CGCTGCTCTTGCCTGCGAGGGGCGAGCTTTCTGATCTCCCTACAGTAGCA
CCAAACTTCCAGTTGGAGGTGTCTTGTGACAGTAGTAGTCCTTTGCAAAC
ATTGATTTTGGCACCTGCGACAGCCTGTGTATGTACCGCCGATCTTTCAT
TTATTTTCGCTGGCATGCTCTCCCTTGCCTCTTGCGCACCAGTTGCTACC
GTAGGTGACACAAGATACCACACCCCCTGGACCGACTTTTAGAGTTCCAT
TACTCCGTAACGAAGATGATGCCAACGCCAAACGACACATTTTCGGACAG
CCCCTCGACTAGATCTTTCCAACGCCACCCCTTTCGGCACTGGCACTCTT
CTTGCTGGGGAGGAATCGGGCTTTAAAAATCTGTCCAGGGGGTGTCGTAT
CTTGTGTCACCTACGGTACTGTCGACCGCTTTCGCGAAGAAATTAACTTC
ATCCAGGGAATAAGAGAAGGGGGCTCCGTAACAACCCTAACGCTGACCCT
GACCCTGACCCTGACCCAAAACCCCGATCCCCTTTCCCGATTCCATAACT
TTATCCCACGTGTTACTAGCTTAAAACACAAACTCTGCCAAGGCTCTATT
GTACCTACAAACACTACGTTGTGCTGCATACCTACCTTCATCCTGCAACT
CATCCGCTCGCAATATGGCTGCGCTTGACACCTGCGTATTGTGTTTGTTG
TCCGTCCCTGTTTCGTGAGCCGCTCTTAGCCTTTCGGTATCCACATGCGT
TCATAAAACGGAGGAGGCAAAGTTGGGGGGTGGGGGGAGGGGAGGGGGGT
CTATGTATACTTGATCCAGCGAGAAACGACTTGTTCGGCCGTCACAGGAT
TTATAGCACAAGAGCGGCACAAAACCATTAGAATTCTTGCGTGTGGAGTG
CGCCGAACCCCAAAAGAAAAGCGCCTGTGGCGCGACAACCGATCCCAATC
TATCTACGTATGCCATGGTGAATTAGGAAAAAACACTGCATGACGGAACC
TTCTTGGACCCATCGACCCCCCCCCCCTGCGCTTCGTTCTAACCACATCA
GGAGTGTTCGCGCAAACAGCTACATAGCACGCTTGCTGCGTTGAGCGGGC
GGGCGCCTGGCCGTTGTTGCTTGGCGCGGCGGGTTTGAAACCGGTTGGAT
GTACCGGCGGGGCGGACACCGCGGCTACGAGGGGTCGACCGCCATGGCCG
ACCGTGGGACCAAGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6966:398..5962+

>mRNA_L-elsbetiae_contig6966.15739.1 ID=mRNA_L-elsbetiae_contig6966.15739.1|Name=mRNA_L-elsbetiae_contig6966.15739.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=366bp|location=Sequence derived from alignment at L-elsbetiae_contig6966:398..5962+ (Laminarionema elsbetiae ELsaHSoW15)
AGTCAGGTGCACGCAACGGCACGCACGGCAGCGCCTGGACCCTGCTTTCC
CTTCTGTCTCCTGTCTACAAGAGATACTCCCAGAGAAGGAGTGGAGAGTC
AGGTGCACGCAACGGCACGCACGGCAGCGCCTGGACCCTGCTTTCCCTTC
TGTCTCCTGTCTACAAGAGATACTCCCAGAGAAGGAGTGGAGGAGTGTTC
GCGCAAACAGCTACATAGCACGCTTGCTGCGTTGAGCGGGCGGGCGCCTG
GCCGTTGTTGCTTGGCGCGGCGGGTTTGAGAGTGTTCGCGCAAACAGCTA
CATAGCACGCTTGCTGCGTTGAGCGGGCGGGCGCCTGGCCGTTGTTGCTT
GGCGCGGCGGGTTTGA
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