mRNA_L-elsbetiae_contig696.15731.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig696.15731.1
Unique NamemRNA_L-elsbetiae_contig696.15731.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig696.15731.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig696contigL-elsbetiae_contig696:6384..7290 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size907
Cds size498
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig696.15731.1prot_L-elsbetiae_contig696.15731.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig696 6492..6989 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816771.0968792-UTR-L-elsbetiae_contig696:6383..64911622816771.0968792-UTR-L-elsbetiae_contig696:6383..6491Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig696 6384..6491 +
1691683800.8040218-UTR-L-elsbetiae_contig696:6383..64911691683800.8040218-UTR-L-elsbetiae_contig696:6383..6491Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig696 6384..6491 +
1622816771.1192765-UTR-L-elsbetiae_contig696:6989..72901622816771.1192765-UTR-L-elsbetiae_contig696:6989..7290Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig696 6990..7290 +
1691683800.8386679-UTR-L-elsbetiae_contig696:6989..72901691683800.8386679-UTR-L-elsbetiae_contig696:6989..7290Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig696 6990..7290 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816771.1086829-CDS-L-elsbetiae_contig696:6491..69891622816771.1086829-CDS-L-elsbetiae_contig696:6491..6989Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig696 6492..6989 +
1691683800.8217444-CDS-L-elsbetiae_contig696:6491..69891691683800.8217444-CDS-L-elsbetiae_contig696:6491..6989Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig696 6492..6989 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig696.15731.1

>prot_L-elsbetiae_contig696.15731.1 ID=prot_L-elsbetiae_contig696.15731.1|Name=mRNA_L-elsbetiae_contig696.15731.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=166bp
MEPERFEGEAGAPPTPVLSPLCSDHRRSDGHCRSVALETMTAMYASRGVP
EQPESGDISPRVGVALAASASVAFVGVTIMEGGGVPIVTPAAPAASMKAA
ARDTVTPRQHTARRMPHPVAPPPPPPPPPLLSSRTRSAPSTSGPASTGTG
STPSPGPLSYSSAPK*
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mRNA from alignment at L-elsbetiae_contig696:6384..7290+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig696.15731.1 ID=mRNA_L-elsbetiae_contig696.15731.1|Name=mRNA_L-elsbetiae_contig696.15731.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=907bp|location=Sequence derived from alignment at L-elsbetiae_contig696:6384..7290+ (Laminarionema elsbetiae ELsaHSoW15)
CCCGACGCGATATGCCTATGTTCCTCGGTGGTGTGGGTGGTGCCTTCGCC
TCGAAGCTCGCCGTGCCCCGCTGCTGGGGGCGCGCCCGACTCCGACCCGG
CCGGCGCCATGGAACCGGAGCGCTTCGAAGGAGAGGCTGGAGCGCCGCCA
ACTCCCGTGCTGTCCCCGCTCTGTTCTGACCATAGACGATCGGATGGACA
CTGCAGGAGCGTTGCCCTCGAGACCATGACGGCCATGTACGCGTCGCGAG
GGGTGCCGGAGCAGCCGGAGAGCGGGGACATCTCGCCGCGGGTGGGCGTG
GCGCTTGCGGCATCGGCCAGCGTGGCCTTCGTGGGGGTGACCATCATGGA
AGGCGGCGGCGTCCCCATCGTCACCCCGGCCGCGCCGGCCGCGAGCATGA
AGGCCGCCGCCAGGGACACGGTGACGCCGAGGCAGCACACCGCGAGACGC
ATGCCGCACCCCGTAGCTCCTCCTCCTCCTCCTCCTCCTCCTCCGCTCCT
GTCGTCAAGGACACGGTCGGCCCCTTCGACCTCAGGGCCGGCCTCGACGG
GGACGGGCTCAACACCTTCTCCCGGCCCGCTCTCGTACAGCTCGGCTCCG
AAATAGTCCGCTCTTTGATCGCCGCTCTCCCCGGCATTGTAAGCGCGGCT
CGTGTCGGCCGTCGCAGCTTGGGCAGCGTCAACTCCGGCCTCGACCGGAT
CTTCGGCGACGTCATCGCAACCCTGGCCAACGCCCACTAATTCGGCATCA
TCAACCGCCGCCGTTTCCAGAGCATCGGCGAGGCGGCTACGGCGGCTGCC
AACATCGACGGCTCCCGTCGCCGCACCGCCGTCCTCGTGAGCAACCCAAG
TACCGGCTTCGCCGCCCGGAGAAAAACAGGCAGACCTCGCGCTTCCGGCA
GCAGCGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig696:6384..7290+

>mRNA_L-elsbetiae_contig696.15731.1 ID=mRNA_L-elsbetiae_contig696.15731.1|Name=mRNA_L-elsbetiae_contig696.15731.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=996bp|location=Sequence derived from alignment at L-elsbetiae_contig696:6384..7290+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGAACCGGAGCGCTTCGAAGGAGAGGCTGGAGCGCCGCCAACTCCCGT
GCTGTCCCCGCTCTGTTCTGACCATAGACGATCGGATGGACACTGCAGGA
GCGTTGCCCTCGAGACCATGACGGCCATGTACGCGTCGCGAGGGGTGCCG
GAGCAGCCGGAGAGCGGGGACATCTCGCCGCGGGTGGGCGTGGCGCTTGC
GGCATCGGCCAGCGTGGCCTTCGTGGGGGTGACCATCATGGAAGGCGGCG
GCGTCCCCATCGTCACCCCGGCCGCGCCGGCCGCGAGCATGAAGGCCGCC
GCCAGGGACACGGTGACGCCGAGGCAGCACACCGCGAGACGCATGCCGCA
CCCCGTAGCTCCTCCTCCTCCTCCTCCTCCTCCTCCGCTCCTGTCGTCAA
GGACACGGTCGGCCCCTTCGACCTCAGGGCCGGCCTCGACGGGGACGGGC
TCAACACCTTCTCCCGGCCCGCTCTCGTACAGCTCGGCTCCGAAATAGAT
GGAACCGGAGCGCTTCGAAGGAGAGGCTGGAGCGCCGCCAACTCCCGTGC
TGTCCCCGCTCTGTTCTGACCATAGACGATCGGATGGACACTGCAGGAGC
GTTGCCCTCGAGACCATGACGGCCATGTACGCGTCGCGAGGGGTGCCGGA
GCAGCCGGAGAGCGGGGACATCTCGCCGCGGGTGGGCGTGGCGCTTGCGG
CATCGGCCAGCGTGGCCTTCGTGGGGGTGACCATCATGGAAGGCGGCGGC
GTCCCCATCGTCACCCCGGCCGCGCCGGCCGCGAGCATGAAGGCCGCCGC
CAGGGACACGGTGACGCCGAGGCAGCACACCGCGAGACGCATGCCGCACC
CCGTAGCTCCTCCTCCTCCTCCTCCTCCTCCTCCGCTCCTGTCGTCAAGG
ACACGGTCGGCCCCTTCGACCTCAGGGCCGGCCTCGACGGGGACGGGCTC
AACACCTTCTCCCGGCCCGCTCTCGTACAGCTCGGCTCCGAAATAG
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