mRNA_L-elsbetiae_contig11821.1573.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11821.1573.1
Unique NamemRNA_L-elsbetiae_contig11821.1573.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig11821.1573.1 vs. uniprot
Match: D7G8M6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8M6_ECTSI)

HSP 1 Score: 166 bits (420), Expect = 3.060e-47
Identity = 81/109 (74.31%), Postives = 85/109 (77.98%), Query Frame = 1 
Query:    1 GLQLVTGHLDGSMSQWHELSDRLEAAFGVSGVGAXXXXXXEPSTDMHWHAYPVRCMAVAPDGVQLFSGGEEAVLVQWNLSKGTKAFLPRLGATLQVSQLDKPRGAPCLC 327
            G  LVTGHLDGSMSQWHEL+DRL AAF VSG          PSTDMHWHA+PVRCM+VAPDGVQLFSGGEEAVLVQWNLSKGTKAFLPRLGA LQV  +D      C C
Sbjct:  348 GETLVTGHLDGSMSQWHELTDRLRAAFKVSGSREVFSEGGAPSTDMHWHAHPVRCMSVAPDGVQLFSGGEEAVLVQWNLSKGTKAFLPRLGAPLQVLHIDCREDVGCSC 456
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BLAST of mRNA_L-elsbetiae_contig11821.1573.1 vs. uniprot
Match: A0A6H5KD90_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD90_9PHAE)

HSP 1 Score: 155 bits (392), Expect = 1.310e-41
Identity = 75/95 (78.95%), Postives = 78/95 (82.11%), Query Frame = 1 
Query:    1 GLQLVTGHLDGSMSQWHELSDRLEAAFGVSGVGAXXXXXXEPSTDMHWHAYPVRCMAVAPDGVQLFSGGEEAVLVQWNLSKGTKAFLPRLGATLQ 285
            G  L+T HLDGSMSQWHEL+DRL AAF V G          PSTDMHWHA+PVRCMAVAPDGVQLFSGGEEAVLVQWNLSKGTKAFLPRLGA LQ
Sbjct:  388 GESLITAHLDGSMSQWHELTDRLRAAFKVLGSREVLSEAGPPSTDMHWHAHPVRCMAVAPDGVQLFSGGEEAVLVQWNLSKGTKAFLPRLGAPLQ 482
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BLAST of mRNA_L-elsbetiae_contig11821.1573.1 vs. uniprot
Match: A0A835Z938_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z938_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 5.290e-18
Identity = 48/99 (48.48%), Postives = 58/99 (58.59%), Query Frame = 1 
Query:   10 LVTGHLDGSMSQWHELSDRLEAAF-GVSGVGAXXXXXXEP-STDMHWHAYPVRCMAVAPDGVQLFSGGEEAVLVQWNLSKG------TKAFLPRLGATL 282
            + TGH DGSM+ W  L    E A    +G G        P ST +HWHA+ V C+A +PDG  L+SGGEE VLVQWNL +G       + FLPRLGA L
Sbjct:  450 VATGHKDGSMTVWRGLGTAAEEAILSGAGEGGRGRAGGRPKSTTLHWHAHAVSCLAFSPDGGYLYSGGEEGVLVQWNLRRGGGGGAANQNFLPRLGAPL 548
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BLAST of mRNA_L-elsbetiae_contig11821.1573.1 vs. uniprot
Match: A0A7S1CJE4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CJE4_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 1.410e-13
Identity = 40/92 (43.48%), Postives = 51/92 (55.43%), Query Frame = 1 
Query:   10 LVTGHLDGSMSQWHELSDRLEAAFGVSGVGAXXXXXXEPSTDMHWHAYPVRCMAVAPDGVQLFSGGEEAVLVQWNLSKGTKAFLPRLGATLQ 285
            ++TG  +G +  W+ L D   A    + V          +T  HWHA+ V C A  PDG  L SGG+E VLV W L+ GTK FLPRLGA L+
Sbjct:   50 VITGDAEGKIRFWYCL-DASAADVDAASV---------TTTTQHWHAHAVTCAAFTPDGAYLLSGGQEGVLVVWQLATGTKTFLPRLGAPLR 131
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BLAST of mRNA_L-elsbetiae_contig11821.1573.1 vs. uniprot
Match: A0A7S0WFQ5_9CHLO (Hypothetical protein n=1 Tax=Ostreococcus mediterraneus TaxID=1486918 RepID=A0A7S0WFQ5_9CHLO)

HSP 1 Score: 75.5 bits (184), Expect = 1.470e-13
Identity = 37/63 (58.73%), Postives = 43/63 (68.25%), Query Frame = 1 
Query:  124 PSTDMHWHAYPVRCMAVAPDGVQLFSGGEEAVLVQWNLSKGTKAFLPRLGATLQ--VSQLDKP 306
            PST  HWH+  V C+  + DG  LFSGGEEAVLV WNL  G K +LPRLGA L+  VSQ + P
Sbjct:  291 PSTTSHWHSRAVGCLHFSGDGAHLFSGGEEAVLVIWNLQDGKKTYLPRLGAPLKSIVSQREDP 353
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BLAST of mRNA_L-elsbetiae_contig11821.1573.1 vs. uniprot
Match: A0A5C3QC93_9AGAR (WD40-repeat-containing domain protein n=1 Tax=Pterula gracilis TaxID=1884261 RepID=A0A5C3QC93_9AGAR)

HSP 1 Score: 75.5 bits (184), Expect = 1.480e-13
Identity = 40/97 (41.24%), Postives = 52/97 (53.61%), Query Frame = 1 
Query:   13 VTGHLDGSMSQWHELSDRLEAAFGVSGVGAXXXXXXEPSTDMHWHAYPVRCMAVAPDGVQLFSGGEEAVLVQWNLSKGTKAFLPRLGATLQVSQLDK 303
             TG   G +  W+ L+  L  A  V+GVG         +T MHWHA+ V  +   P+G  L SGGEEAVLV W L  G K F+PR+GA +    L +
Sbjct:  286 ATGDEKGQIRLWYCLNGDLAMASQVTGVGKKAQ-----TTRMHWHAHAVSSLVFTPNGAYLLSGGEEAVLVIWQLHTGKKEFVPRVGAPISTVSLSR 377
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BLAST of mRNA_L-elsbetiae_contig11821.1573.1 vs. uniprot
Match: A0A7S3UF87_9CHLO (Hypothetical protein n=1 Tax=Picocystis salinarum TaxID=88271 RepID=A0A7S3UF87_9CHLO)

HSP 1 Score: 73.9 bits (180), Expect = 5.040e-13
Identity = 43/95 (45.26%), Postives = 51/95 (53.68%), Query Frame = 1 
Query:    1 GLQLVTGHLDGSMSQWHELSDRLEAAFGVSGVGAXXXXXXEPS-TDMHWHAYPVRCMAVAPDGVQLFSGGEEAVLVQWNLSKGTKAFLPRLGATL 282
            G Q+V G   G + QWH ++ + E A G    G        P  T  HWH+  VRC+A   DG  L SGGEE VLV W L  G + FLPRLGA L
Sbjct:  189 GKQVVAGDDTGRILQWH-VNYKKEIAQG----GNKNSTYETPKVTTRHWHSRSVRCLAFTEDGTHLLSGGEEGVLVMWQLETGKQEFLPRLGAIL 278
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BLAST of mRNA_L-elsbetiae_contig11821.1573.1 vs. uniprot
Match: A0A096P9M2_OSTTA (Quinonprotein alcohol dehydrogenase-like superfamily n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A096P9M2_OSTTA)

HSP 1 Score: 73.9 bits (180), Expect = 5.080e-13
Identity = 36/63 (57.14%), Postives = 42/63 (66.67%), Query Frame = 1 
Query:  124 PSTDMHWHAYPVRCMAVAPDGVQLFSGGEEAVLVQWNLSKGTKAFLPRLGATLQ--VSQLDKP 306
            PST  HWH+  V C+  + DG  LFSGGEEAVLV WNL  G K +LPRLGA L   V++ D P
Sbjct:  272 PSTTSHWHSRAVGCLHFSADGAHLFSGGEEAVLVIWNLKDGKKTYLPRLGAPLTKIVARRDDP 334
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BLAST of mRNA_L-elsbetiae_contig11821.1573.1 vs. uniprot
Match: K5XE61_PHACS (Uncharacterized protein n=1 Tax=Phanerochaete carnosa (strain HHB-10118-sp) TaxID=650164 RepID=K5XE61_PHACS)

HSP 1 Score: 73.9 bits (180), Expect = 5.130e-13
Identity = 40/100 (40.00%), Postives = 55/100 (55.00%), Query Frame = 1 
Query:   13 VTGHLDGSMSQWHELSDRLEAAFGVSGVGAXXXXXXEPSTDMHWHAYPVRCMAVAPDGVQLFSGGEEAVLVQWNLSKGTKAFLPRLGATLQVSQLDKPRG 312
             TG   G +  W+ L+D + A  GV+GV         P+T +HWHA+ +  +A   +G  L SGGEEAVLV W L  G + F+PR+GA +    L   RG
Sbjct:  262 ATGDNKGVVRLWYCLNDSIPA--GVTGV-----EKKAPTTTLHWHAHAISSLAFTANGAYLLSGGEEAVLVIWQLHTGKREFVPRVGAPIASITLSTARG 354
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BLAST of mRNA_L-elsbetiae_contig11821.1573.1 vs. uniprot
Match: A0A4Y7TYG8_9AGAR (WD40 repeat-like protein n=1 Tax=Coprinellus micaceus TaxID=71717 RepID=A0A4Y7TYG8_9AGAR)

HSP 1 Score: 72.4 bits (176), Expect = 1.770e-12
Identity = 38/101 (37.62%), Postives = 54/101 (53.47%), Query Frame = 1 
Query:   13 VTGHLDGSMSQWHELSDRLEAAFGVSGVGAXXXXXXEPSTDMHWHAYPVRCMAVAPDGVQLFSGGEEAVLVQWNLSKGTKAFLPRLGATLQ-VSQLDKPRG 312
             TG   G++  W+ L+ +L  + GV             +T +HWHA+ V  +A  P+G  L SGGEEAVLV W +  G K F+PR+GA +  +S    P G
Sbjct:  276 ATGDEKGNIRIWYCLNSKLAGSKGVE--------QRSQTTSLHWHAHAVSALAFTPNGAYLLSGGEEAVLVIWQVHSGKKEFVPRVGAPISTISICQSPAG 368
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11821.1573.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8M6_ECTSI3.060e-4774.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KD90_9PHAE1.310e-4178.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z938_9STRA5.290e-1848.48Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S1CJE4_9STRA1.410e-1343.48Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A7S0WFQ5_9CHLO1.470e-1358.73Hypothetical protein n=1 Tax=Ostreococcus mediterr... [more]
A0A5C3QC93_9AGAR1.480e-1341.24WD40-repeat-containing domain protein n=1 Tax=Pter... [more]
A0A7S3UF87_9CHLO5.040e-1345.26Hypothetical protein n=1 Tax=Picocystis salinarum ... [more]
A0A096P9M2_OSTTA5.080e-1357.14Quinonprotein alcohol dehydrogenase-like superfami... [more]
K5XE61_PHACS5.130e-1340.00Uncharacterized protein n=1 Tax=Phanerochaete carn... [more]
A0A4Y7TYG8_9AGAR1.770e-1237.62WD40 repeat-like protein n=1 Tax=Coprinellus micac... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11821contigL-elsbetiae_contig11821:4383..5684 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score166.4
Seed ortholog evalue7.8e-39
Seed eggNOG ortholog2880.D7G8M6
Preferred nameWDR75
KEGG koko:K14552
KEGG Pathwayko03008,map03008
Hectar predicted targeting categoryother localisation
GOsGO:0000462,GO:0000775,GO:0000776,GO:0000785,GO:0000792,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0005737,GO:0005813,GO:0005815,GO:0005856,GO:0005874,GO:0005875,GO:0005938,GO:0006139,GO:0006355,GO:0006356,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008017,GO:0008092,GO:0008150,GO:0008152,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0015630,GO:0015631,GO:0016070,GO:0016072,GO:0019219,GO:0019222,GO:0022613,GO:0030490,GO:0030515,GO:0030684,GO:0030686,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032040,GO:0032991,GO:0033553,GO:0034455,GO:0034470,GO:0034511,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044452,GO:0044464,GO:0044877,GO:0045893,GO:0045935,GO:0045943,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0065007,GO:0070013,GO:0070840,GO:0071704,GO:0071840,GO:0071944,GO:0080090,GO:0090069,GO:0090070,GO:0090304,GO:0097159,GO:0098687,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0099568,GO:1901360,GO:1901363,GO:1902680,GO:1903506,GO:1903508,GO:1990904,GO:2000112,GO:2000232,GO:2000234,GO:2001141
EggNOG free text desc.rRNA processing
EggNOG OGsKOG1963@1,KOG1963@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009
Exons2
Model size342
Cds size342
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815385.3692653-CDS-L-elsbetiae_contig11821:4382..45391622815385.3692653-CDS-L-elsbetiae_contig11821:4382..4539Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11821 4383..4539 -
1691682872.3489146-CDS-L-elsbetiae_contig11821:4382..45391691682872.3489146-CDS-L-elsbetiae_contig11821:4382..4539Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11821 4383..4539 -
1622815385.4176216-CDS-L-elsbetiae_contig11821:5499..56841622815385.4176216-CDS-L-elsbetiae_contig11821:5499..5684Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11821 5500..5684 -
1691682872.3597767-CDS-L-elsbetiae_contig11821:5499..56841691682872.3597767-CDS-L-elsbetiae_contig11821:5499..5684Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11821 5500..5684 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11821.1573.1prot_L-elsbetiae_contig11821.1573.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11821 4383..5684 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11821.1573.1

>prot_L-elsbetiae_contig11821.1573.1 ID=prot_L-elsbetiae_contig11821.1573.1|Name=mRNA_L-elsbetiae_contig11821.1573.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=114bp
GLQLVTGHLDGSMSQWHELSDRLEAAFGVSGVGAGAGAGAEPSTDMHWHA
YPVRCMAVAPDGVQLFSGGEEAVLVQWNLSKGTKAFLPRLGATLQVSQLD
KPRGAPCLCRADM*
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mRNA from alignment at L-elsbetiae_contig11821:4383..5684-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11821.1573.1 ID=mRNA_L-elsbetiae_contig11821.1573.1|Name=mRNA_L-elsbetiae_contig11821.1573.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1302bp|location=Sequence derived from alignment at L-elsbetiae_contig11821:4383..5684- (Laminarionema elsbetiae ELsaHSoW15)
GGCCTCCAGCTGGTGACCGGCCATCTCGACGGGAGCATGAGCCAGTGGCA
CGAGCTGTCAGACCGCCTCGAGGCAGCGTTCGGAGTGTCCGGCGTCGGAG
CGGGGGCGGGGGCCGGGGCGGAGCCATCGACCGACATGCACTGGCACGCG
TACCCTGTCCGGTGCATGGCGGTCGCCCCAGACGGGTGAGAGAGAGACGG
GGCCCCTGAAGTATTTTTGTGCATGGTGGATACCGCTGGCTTCGGAGGTT
GCTGCTGTTGTTGTTGTTGTTGTTGTTGTGGCGGGTGTGTAGATGGACGG
AAACATCCAAGGTACAAGGTACCGCAGTCAAAATAAGAAGCAGATACAGA
TAACAACCGTAAGAAACGGCCGTACATGAAAATACATGGTATGTTCACTT
TTACTTCTATTAAATTATGAATGTTGTGGTTTGGAGCAGGGAAAATCTGT
CTAGATGCATTAAAAGATAGTTTGTCAGTATGCATGATACTTGACCATTT
TTTTTTCTCGCTAAAACTGCGGTCTCTACTCCTTCCTTCGTAGGGCGCTT
AGTTTATCATGGCGACCCCGACTACGCTGTGTTGATGGACACAAACATAT
GTTTCTTACCCCCCCCCCCCTCCCCCCCCCTTCCTCTCTGTTTTGAAACA
GCCAACTCCTTCTGGTGTAAGATAGATCTCTGATGCATTCTTTGTATCTG
TTGTAGCCGGGTATTGTAGGGTTTCCATCACTTAAAAAAAAAAAAAAAAA
TGTGCCTCCTTCTCCGCGTGAGAGCGTTTTTTATTTTTTTTATTTTTTTA
TCTACTTGTTCGATCGACCCTCTGGCATGTCAACTTACATCTACCCCACC
CCCCTCCCTTCCCCGCTCTGCGACGAATGCTCCTTGAAACACGGGGGGAA
AAACGAAACGTCGATGCCTGCTCCTCTGGCCCCACGATCACTATCGCCGT
CATGACATCATCACCGTCGATCAAATGACGTCGTCACCAACTCTCATCAC
CACCACCACCACCACCACCACCGTCAACGTCCATCCACATCATCATCATC
CACATCATTATCATCCACACATCATCATCATCACCACCGCCATCACCATC
ATGACGTCATCACCACCACTACTGTCGTGGCGTCATCACCATCAGGGTCC
AGCTGTTCTCCGGGGGAGAGGAGGCGGTGTTGGTGCAGTGGAACCTGAGC
AAGGGTACCAAAGCGTTTCTCCCTCGCTTGGGGGCAACCCTTCAGGTTAG
TCAGCTGGACAAACCGCGGGGGGCCCCGTGTCTTTGTCGTGCCGATATGT
AA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11821:4383..5684-

>mRNA_L-elsbetiae_contig11821.1573.1 ID=mRNA_L-elsbetiae_contig11821.1573.1|Name=mRNA_L-elsbetiae_contig11821.1573.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=684bp|location=Sequence derived from alignment at L-elsbetiae_contig11821:4383..5684- (Laminarionema elsbetiae ELsaHSoW15)
GGCCTCCAGCTGGTGACCGGCCATCTCGACGGGAGCATGAGCCAGTGGCA
CGAGCTGTCAGACCGCCTCGAGGCAGCGTTCGGAGTGTCCGGCGTCGGAG
CGGGGGCGGGGGCCGGGGCGGAGCCATCGACCGACATGCACTGGCACGCG
TACCCTGTCCGGTGCATGGCGGTCGCCCCAGACGGGGCCTCCAGCTGGTG
ACCGGCCATCTCGACGGGAGCATGAGCCAGTGGCACGAGCTGTCAGACCG
CCTCGAGGCAGCGTTCGGAGTGTCCGGCGTCGGAGCGGGGGCGGGGGCCG
GGGCGGAGCCATCGACCGACATGCACTGGCACGCGTACCCTGTCCGGTGC
ATGGCGGTCGCCCCAGACGGGGTCCAGCTGTTCTCCGGGGGAGAGGAGGC
GGTGTTGGTGCAGTGGAACCTGAGCAAGGGTACCAAAGCGTTTCTCCCTC
GCTTGGGGGCAACCCTTCAGGTTAGTCAGCTGGACAAACCGCGGGGGGCC
CCGTGTCTTTGTCGTGCCGATATGTAAGGTCCAGCTGTTCTCCGGGGGAG
AGGAGGCGGTGTTGGTGCAGTGGAACCTGAGCAAGGGTACCAAAGCGTTT
CTCCCTCGCTTGGGGGCAACCCTTCAGGTTAGTCAGCTGGACAAACCGCG
GGGGGCCCCGTGTCTTTGTCGTGCCGATATGTAA
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