mRNA_L-elsbetiae_contig6956.15728.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6956.15728.1
Unique NamemRNA_L-elsbetiae_contig6956.15728.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6956.15728.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6956contigL-elsbetiae_contig6956:2934..3408 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size475
Cds size336
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6956.15728.1prot_L-elsbetiae_contig6956.15728.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6956 2988..3323 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816770.8029954-UTR-L-elsbetiae_contig6956:2933..29871622816770.8029954-UTR-L-elsbetiae_contig6956:2933..2987Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6956 2934..2987 +
1691683800.59189-UTR-L-elsbetiae_contig6956:2933..29871691683800.59189-UTR-L-elsbetiae_contig6956:2933..2987Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6956 2934..2987 +
1622816770.8248792-UTR-L-elsbetiae_contig6956:3323..34081622816770.8248792-UTR-L-elsbetiae_contig6956:3323..3408Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6956 3324..3408 +
1691683800.618852-UTR-L-elsbetiae_contig6956:3323..34081691683800.618852-UTR-L-elsbetiae_contig6956:3323..3408Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6956 3324..3408 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816770.8144479-CDS-L-elsbetiae_contig6956:2987..33231622816770.8144479-CDS-L-elsbetiae_contig6956:2987..3323Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6956 2988..3323 +
1691683800.6065402-CDS-L-elsbetiae_contig6956:2987..33231691683800.6065402-CDS-L-elsbetiae_contig6956:2987..3323Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6956 2988..3323 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6956.15728.1

>prot_L-elsbetiae_contig6956.15728.1 ID=prot_L-elsbetiae_contig6956.15728.1|Name=mRNA_L-elsbetiae_contig6956.15728.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=112bp
MVRCPSLPIGATSVIVSQILSIFSRLENSFWHATMGKHVPGFHCDFQLLS
SRARFRYKTHVILIEFSLGAGSGSVGCWSSHLRALEPGFSGGDFFRLATH
VATYASSGPLV*
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mRNA from alignment at L-elsbetiae_contig6956:2934..3408+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6956.15728.1 ID=mRNA_L-elsbetiae_contig6956.15728.1|Name=mRNA_L-elsbetiae_contig6956.15728.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=475bp|location=Sequence derived from alignment at L-elsbetiae_contig6956:2934..3408+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTGTGTATGTGGTACTATTGACATGCTTGGGGTACAATAGAACAGAGG
GGAGATGGTGCGTTGCCCAAGCTTGCCAATTGGTGCCACGTCTGTAATCG
TTTCGCAAATCTTATCTATTTTTTCGCGATTGGAAAACTCGTTTTGGCAC
GCGACCATGGGTAAACATGTTCCTGGTTTTCATTGCGATTTCCAGCTTCT
TTCGAGCAGAGCGCGTTTCCGTTATAAAACACATGTTATATTGATTGAGT
TTTCCCTGGGTGCAGGGTCAGGGTCTGTGGGCTGTTGGTCGAGCCACTTA
AGGGCACTAGAACCAGGCTTCTCAGGAGGAGACTTTTTCAGGCTGGCGAC
GCACGTGGCGACGTACGCTAGTTCTGGCCCTTTAGTGTGACAGCTGTTCT
GACGCACTGCCCTCGGCAACTTTATAGTGGTGCGTAACTCGAACAGCAGT
CAACAAGCATCAGGTTATTGACAGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6956:2934..3408+

>mRNA_L-elsbetiae_contig6956.15728.1 ID=mRNA_L-elsbetiae_contig6956.15728.1|Name=mRNA_L-elsbetiae_contig6956.15728.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=672bp|location=Sequence derived from alignment at L-elsbetiae_contig6956:2934..3408+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTGCGTTGCCCAAGCTTGCCAATTGGTGCCACGTCTGTAATCGTTTC
GCAAATCTTATCTATTTTTTCGCGATTGGAAAACTCGTTTTGGCACGCGA
CCATGGGTAAACATGTTCCTGGTTTTCATTGCGATTTCCAGCTTCTTTCG
AGCAGAGCGCGTTTCCGTTATAAAACACATGTTATATTGATTGAGTTTTC
CCTGGGTGCAGGGTCAGGGTCTGTGGGCTGTTGGTCGAGCCACTTAAGGG
CACTAGAACCAGGCTTCTCAGGAGGAGACTTTTTCAGGCTGGCGACGCAC
GTGGCGACGTACGCTAGTTCTGGCCCTTTAGTGTGAATGGTGCGTTGCCC
AAGCTTGCCAATTGGTGCCACGTCTGTAATCGTTTCGCAAATCTTATCTA
TTTTTTCGCGATTGGAAAACTCGTTTTGGCACGCGACCATGGGTAAACAT
GTTCCTGGTTTTCATTGCGATTTCCAGCTTCTTTCGAGCAGAGCGCGTTT
CCGTTATAAAACACATGTTATATTGATTGAGTTTTCCCTGGGTGCAGGGT
CAGGGTCTGTGGGCTGTTGGTCGAGCCACTTAAGGGCACTAGAACCAGGC
TTCTCAGGAGGAGACTTTTTCAGGCTGGCGACGCACGTGGCGACGTACGC
TAGTTCTGGCCCTTTAGTGTGA
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