mRNA_L-elsbetiae_contig11820.1572.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11820.1572.1
Unique NamemRNA_L-elsbetiae_contig11820.1572.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig11820.1572.1 vs. uniprot
Match: D8LRC0_ECTSI (W2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRC0_ECTSI)

HSP 1 Score: 158 bits (399), Expect = 2.690e-44
Identity = 82/89 (92.13%), Postives = 86/89 (96.63%), Query Frame = 3 
Query:    3 ATSESLEVEDAVAFDDSVAAIRRHLEDGTSNETIFEEIRTAQTFAAFPVHYRIHLYVAASFATADKVTQDDIASRAAMFDMLKSRPDDR 269
            ATS SLEVEDAVAFDDSVAAIRRHL+DGTSNE IFEEIRTAQTFAAFPVHYRIHL+VAASFATADKVT+DDI SRAAMFDMLKSRPDD+
Sbjct:  222 ATSGSLEVEDAVAFDDSVAAIRRHLDDGTSNENIFEEIRTAQTFAAFPVHYRIHLFVAASFATADKVTKDDIESRAAMFDMLKSRPDDQ 310
[Close]
BLAST of mRNA_L-elsbetiae_contig11820.1572.1 vs. uniprot
Match: A0A7S2FYP1_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FYP1_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 9.400e-5
Identity = 21/38 (55.26%), Postives = 28/38 (73.68%), Query Frame = 2 
Query:  269 RHIIGAFELLCQVHRPSLMGFFPVILKHLYDSDIVEEE 382
            RH+IGAFE     H PS++  FP++LK LYD D++EEE
Sbjct:   88 RHLIGAFEEFFCKHHPSIIKVFPLVLKTLYDEDVLEEE 125
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11820.1572.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LRC0_ECTSI2.690e-4492.13W2 domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
A0A7S2FYP1_9STRA9.400e-555.26Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11820contigL-elsbetiae_contig11820:3095..5987 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons3
Model size387
Cds size384
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11820.1572.1prot_L-elsbetiae_contig11820.1572.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11820 3096..5987 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815385.3111873-CDS-L-elsbetiae_contig11820:3095..31751622815385.3111873-CDS-L-elsbetiae_contig11820:3095..3175Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11820 3096..3175 -
1691682872.3142953-CDS-L-elsbetiae_contig11820:3095..31751691682872.3142953-CDS-L-elsbetiae_contig11820:3095..3175Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11820 3096..3175 -
1622815385.3262508-CDS-L-elsbetiae_contig11820:4134..43281622815385.3262508-CDS-L-elsbetiae_contig11820:4134..4328Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11820 4135..4328 -
1691682872.3238246-CDS-L-elsbetiae_contig11820:4134..43281691682872.3238246-CDS-L-elsbetiae_contig11820:4134..4328Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11820 4135..4328 -
1622815385.3369596-CDS-L-elsbetiae_contig11820:5877..59871622815385.3369596-CDS-L-elsbetiae_contig11820:5877..5987Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11820 5878..5987 -
1691682872.339284-CDS-L-elsbetiae_contig11820:5877..59871691682872.339284-CDS-L-elsbetiae_contig11820:5877..5987Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11820 5878..5987 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11820.1572.1

>prot_L-elsbetiae_contig11820.1572.1 ID=prot_L-elsbetiae_contig11820.1572.1|Name=mRNA_L-elsbetiae_contig11820.1572.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=128bp
WLPRKALRWKTLLRSTTPLPPFAATSRTALPTRLSSRRSVPPRPSPPSLS
TTASTSTSRPPSPPPTRLPRTISRPAPRCSTCSSLAQTTEAHHRCVRAAL
PGAPPQPHGLLPRHPEAPLRLGHRGGGG
back to top

mRNA from alignment at L-elsbetiae_contig11820:3095..5987-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11820.1572.1 ID=mRNA_L-elsbetiae_contig11820.1572.1|Name=mRNA_L-elsbetiae_contig11820.1572.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2893bp|location=Sequence derived from alignment at L-elsbetiae_contig11820:3095..5987- (Laminarionema elsbetiae ELsaHSoW15)
TGGCTACCTCGGAAAGCCTTGAGGTGGAAGACGCTGTTGCGTTCGACGAC
TCCGTTGCCGCCATTCGCCGCCACCTCGAGGACGGCACTTCCAACGAGAC
TATCTTCGAGGTTTGTGCCTTCTTTGTGTGTCTGGTTGAGAGTTTCGTGT
GGGGGTGAGAGCGAGGGAAAGGCCGCGTGTTCTCCACGCTTTTTATGCGT
TCCAGAATTCCCCGCGGTGGAAGCGGCGTGTGAGTCCAGGAGGGAGGGAT
GGCTGTTTACTCGTCGCTGCATGCCCAAAACCGTTCAACGCGTGAGGTCA
TGTGGAGAACGTAGCGCCCCCCCCGTCCTCGGGTATCTAGAGTAAAGGCG
TGGGTGTTACAGGCCAACGGTTTCAAAAAAACAGCTCTGTTCTTTGTATG
GTCCGTCCGGGACAATTTCTCCATTTACGTTTTTTCGGGTTTCAAGTAAT
TTACTGGCCAGGGGCCTAAAAACGAACTTCGGAGACTGGGAAGATATGTG
GGTTTTGGACAAAGAACGAAATTTCTCAACAGAATAGGATGTTTTTCAAA
AATCGGAAGAAAGGTGTACCTGGGGATTTCCGAGAGGAATCGTTTGCCGT
GCGTGGTCTACTTGAAAATCTGACGTTTGGAATCAAAATCGAACGATAGG
TCTACCCGGGGAATCTCAAGAGCTGTCCATCCAGATCCGGTCTCGGAATT
GTGGTCTGAAAAAAACTCACCCCAGGAAAAAGCGAACAAACTTTTCCATT
TTTGTTTGTGATGACGAGACAAAATAAAAAATAACAATCGCTTTCCATTC
AAAGACGCGCGTAGAGACGGGGCGTTTGGCGGTGTTTTTAAAATTGGAAA
CAGCCCTCCCACTCCCGAGAATAAGTGTACCTAAGTGCCGCTTAAATTGT
GGACAAGTTGTCCCAGACGGACCATATGTATCGAACACAGGCGGAAAACT
AAAAACCTTAGAGGACTTCTTTTTTTTCCTTCGTGCTTTCTCGGACAAAT
CATTATTTTTCGCGTCTCAGAAGCCTTTTCGTACCATCATCATGACTGCG
TACCCAAGGACAGGTTCTGAAAAGAAAGCATCAGAATGGGCGCAAAGTCT
ACCCGGAAAATGGAATGGTCTTCATAGCCCTGCAGGTCATTTTTTCCTTG
TTTCCCGTATATTCCTCCGAAGTGCAGTAAACCCAAGCTGGCTCCATGTC
GTCATCAATTCTTCTTTTACGCTGTTTGGCCTTGTAGGCTATGTGAAAAG
CTATCGAGCGATGCCCAAATATTGCCACAAATCGTCGTGACACCTTAGAA
CAAAGGTATCAGAGCGGAGAGGTCCCTGAAGTGCTCCTCAATAAGGACCA
CCCCACTCGATCTGTGTGGACGAAGCCAAGATATGTAGCACCCACGTGCT
GGTGGGGTTTGGTCTCAACTCCAGTGATCAGCTGCCGCGTTTGAATGTAA
GGAATGGCTCGCGAACGCAAGCGAGAACGCCTTGAGAGCAGTTTGGCGAC
GAATGGACCTGGCTTTGTTCATCTATGTATCGAGCGAGTCAAGGTTGCCA
ACCAGCCTGCTCTGGCGTGTGTTTCACAACAATTACCCCCCCCCGCCCTT
CTAACAATAGCCATCGGTCCGCTCCCGTTCACCTCTCGTTCTGATCTTTT
GCGTTGCAGGAGATCCGTACCGCCCAGACCTTCGCCGCCTTCCCTGTCCA
CTACCGCATCCACCTCTACGTCGCGGCCTCCTTCGCCACCGCCGACAAGG
TTACCCAGGACGATATCGCGTCCCGCGCCGCGATGTTCGACATGCTCAAG
TCTCGCCCAGACGACAGAGGCACATCATCGGTGCGTTCGAGCTGCTCTGC
CAGGCAAGTTCGAGTTTTTATTTATTTCCATGTAGATAAATTCCTGTTCA
TTTTTCGTTGTTTTCGTTCTGATATCTTTTGTTGTTGCGCTGTTCACGCA
AATTCAACACCGGTCGCCCTGGTTATCTAGTGTTTAAACTCAAACCCGCT
AGCAACAAGGGCATGAGAGCGAATCTCTTTGCATCGGGATGAAGAATTTG
CGGCTTTGCAATAGAAGCGAAAAGGCTAAAAAGTTCATGCGCAGACAGAA
TTCGACTTGAACGTTGACTAGAGGAAGGTTTCAGCTGAACCCTGGTCGCG
ATAGAAATTGAGGCAACCATCGTAGGAGGGAAGGCGAGGCAAAACAAAAG
AAAAAAAAGCCCCGTTGTTTTTGTTTTACCCTCTCCTGTGTGACCCCGGC
GGATACGTGTCATGATGCAGAAAACCTACACCGAAACGTGCAGATTACAT
ACACCACACGAAACGTGTGGCATAAACGACCATATGATGAACAAAAACAC
ACACACACACACACGCATTCTCTCTCTCTCTCCCGTGGGTTGTGTTCTTG
GTGTGAGCTCCGTTTTCCCCCCTCATGTTCGTGTCCTGTTCCCTGCCATT
TACATGCAGTGTGCAAGTAGATATACTGCCAACTCTTTCATGCAAGTACC
AACGTATACCCTGCACTCCGGCGTATCTAGCACAGCGTATCCAGGGTAAT
AACTTAGCCTCTTACTGTCTTGAACTGTTCGTACTCCTTGCTGTATCTTG
ACACGGGCATATCCAGACTAATATTGGATCCCATAACACTAGCCGACCCT
GAGGGGGCGTCGATGCAGCATACGCCCGCTAAATACTGCTGTGAACACCT
CTCAAAAAACAATTTTCCCTTTCCGGCCCCCGTCCTATCTCCTTCGTCTT
TGCTTGCTTGCCCCCCACCCCGAAAATCAAAACCTTGTCAACTCGACAAC
ATCCACGAACAGGTGCACCGCCCCAGCCTCATGGGCTTCTTCCCCGTCAT
CCTGAAGCACCTCTACGACTCGGACATCGTGGAGGAGGAGGCC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig11820:3095..5987-

>mRNA_L-elsbetiae_contig11820.1572.1 ID=mRNA_L-elsbetiae_contig11820.1572.1|Name=mRNA_L-elsbetiae_contig11820.1572.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=768bp|location=Sequence derived from alignment at L-elsbetiae_contig11820:3095..5987- (Laminarionema elsbetiae ELsaHSoW15)
TGGCTACCTCGGAAAGCCTTGAGGTGGAAGACGCTGTTGCGTTCGACGAC
TCCGTTGCCGCCATTCGCCGCCACCTCGAGGACGGCACTTCCAACGAGAC
TATCTTCGAGTGGCTACCTCGGAAAGCCTTGAGGTGGAAGACGCTGTTGC
GTTCGACGACTCCGTTGCCGCCATTCGCCGCCACCTCGAGGACGGCACTT
CCAACGAGACTATCTTCGAGGAGATCCGTACCGCCCAGACCTTCGCCGCC
TTCCCTGTCCACTACCGCATCCACCTCTACGTCGCGGCCTCCTTCGCCAC
CGCCGACAAGGTTACCCAGGACGATATCGCGTCCCGCGCCGCGATGTTCG
ACATGCTCAAGTCTCGCCCAGACGACAGAGGCACATCATCGGTGCGTTCG
AGCTGCTCTGCCAGGAGATCCGTACCGCCCAGACCTTCGCCGCCTTCCCT
GTCCACTACCGCATCCACCTCTACGTCGCGGCCTCCTTCGCCACCGCCGA
CAAGGTTACCCAGGACGATATCGCGTCCCGCGCCGCGATGTTCGACATGC
TCAAGTCTCGCCCAGACGACAGAGGCACATCATCGGTGCGTTCGAGCTGC
TCTGCCAGGTGCACCGCCCCAGCCTCATGGGCTTCTTCCCCGTCATCCTG
AAGCACCTCTACGACTCGGACATCGTGGAGGAGGAGGCGTGCACCGCCCC
AGCCTCATGGGCTTCTTCCCCGTCATCCTGAAGCACCTCTACGACTCGGA
CATCGTGGAGGAGGAGGC
back to top