mRNA_L-elsbetiae_contig6948.15719.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig6948.15719.1 vs. uniprot
Match: D7FY65_ECTSI (AAA_12 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY65_ECTSI) HSP 1 Score: 89.0 bits (219), Expect = 3.280e-19 Identity = 45/56 (80.36%), Postives = 50/56 (89.29%), Query Frame = 1 Query: 19 VDSCQGSDADVIIISTVRSGG-RRKLSGFMLDRSRVNVAISRAKQECIVVGDRDTL 183 VDSCQGSDADV++ISTVRSGG KLSGFM DR RVNVAISRAK+ECI+VGD+ TL Sbjct: 620 VDSCQGSDADVVVISTVRSGGVGYKLSGFMTDRRRVNVAISRAKEECIIVGDKHTL 675
BLAST of mRNA_L-elsbetiae_contig6948.15719.1 vs. uniprot
Match: C1E7F3_MICCC (AAA_12 domain-containing protein (Fragment) n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1E7F3_MICCC) HSP 1 Score: 66.6 bits (161), Expect = 2.610e-13 Identity = 32/55 (58.18%), Postives = 43/55 (78.18%), Query Frame = 1 Query: 19 VDSCQGSDADVIIISTVRSGGRRKLSGFMLDRSRVNVAISRAKQECIVVGDRDTL 183 VD+CQG++ D ++IS VRS GR+ + GF+ D RVNVAISRAK+ CI+ GDR T+ Sbjct: 7 VDACQGAEFDYVLISPVRSNGRKAI-GFVADSRRVNVAISRAKRMCIIFGDRRTM 60
BLAST of mRNA_L-elsbetiae_contig6948.15719.1 vs. uniprot
Match: A0A7S0PMJ3_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0PMJ3_MICPS) HSP 1 Score: 67.8 bits (164), Expect = 9.300e-12 Identity = 32/55 (58.18%), Postives = 43/55 (78.18%), Query Frame = 1 Query: 19 VDSCQGSDADVIIISTVRSGGRRKLSGFMLDRSRVNVAISRAKQECIVVGDRDTL 183 VD+CQG++ D ++IS VRS GRR + GF+ D RVNVA+SRAK+ CI+ GDR T+ Sbjct: 557 VDACQGAEFDYVLISPVRSNGRRAI-GFVADSRRVNVAVSRAKRMCIIFGDRKTM 610
BLAST of mRNA_L-elsbetiae_contig6948.15719.1 vs. uniprot
Match: UPI000C77B63B (putative regulator of nonsense transcripts 1 n=1 Tax=Eurytemora affinis TaxID=88015 RepID=UPI000C77B63B) HSP 1 Score: 63.9 bits (154), Expect = 4.840e-11 Identity = 34/55 (61.82%), Postives = 41/55 (74.55%), Query Frame = 1 Query: 19 VDSCQGSDADVIIISTVRSGGRRKLSGFMLDRSRVNVAISRAKQECIVVGDRDTL 183 VD QGS+ DVIIIS VRSGG GF+ D+ RVNVA++RAKQ I++GD DTL Sbjct: 96 VDGYQGSERDVIIISCVRSGGES--IGFLSDKERVNVALTRAKQALILIGDLDTL 148
BLAST of mRNA_L-elsbetiae_contig6948.15719.1 vs. uniprot
Match: A0A7S0GNV1_MICPS (Hypothetical protein (Fragment) n=2 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0GNV1_MICPS) HSP 1 Score: 63.9 bits (154), Expect = 2.090e-10 Identity = 29/55 (52.73%), Postives = 43/55 (78.18%), Query Frame = 1 Query: 19 VDSCQGSDADVIIISTVRSGGRRKLSGFMLDRSRVNVAISRAKQECIVVGDRDTL 183 VD+CQGS+ D ++IST R+ RR + GF+ D R+NVAISRAK++C+++GD T+ Sbjct: 149 VDACQGSEFDFVLISTTRANDRRAV-GFVSDPRRINVAISRAKRQCVILGDARTM 202
BLAST of mRNA_L-elsbetiae_contig6948.15719.1 vs. uniprot
Match: UPI000D142C80 (AAA domain-containing protein n=1 Tax=Brumimicrobium mesophilum TaxID=392717 RepID=UPI000D142C80) HSP 1 Score: 60.5 bits (145), Expect = 3.500e-9 Identity = 31/59 (52.54%), Postives = 44/59 (74.58%), Query Frame = 1 Query: 7 KQTQVDSCQGSDADVIIISTVRSGGRRKLSGFMLDRSRVNVAISRAKQECIVVGDRDTL 183 K + +D+ QG +ADVII+S VRS G K+ GF+ D R+NVA++RAK++ IV+GD TL Sbjct: 525 KVSTIDAFQGQEADVIILSLVRSNGEGKI-GFLSDYRRMNVALTRAKKKLIVIGDSATL 582
BLAST of mRNA_L-elsbetiae_contig6948.15719.1 vs. uniprot
Match: A4S6Q6_OSTLU (Uncharacterized protein n=1 Tax=Ostreococcus lucimarinus (strain CCE9901) TaxID=436017 RepID=A4S6Q6_OSTLU) HSP 1 Score: 60.1 bits (144), Expect = 4.770e-9 Identity = 30/55 (54.55%), Postives = 41/55 (74.55%), Query Frame = 1 Query: 19 VDSCQGSDADVIIISTVRSGGRRKLSGFMLDRSRVNVAISRAKQECIVVGDRDTL 183 VDS QGS+ADV++ S VRS + + GF+ D+ R+NVA++RAK IV+G RDTL Sbjct: 466 VDSFQGSEADVVVCSAVRSNAKANV-GFLSDKRRLNVALTRAKYSSIVLGSRDTL 519
BLAST of mRNA_L-elsbetiae_contig6948.15719.1 vs. uniprot
Match: A0A2N7WHV9_9BURK (DNA helicase n=5 Tax=Burkholderiaceae TaxID=119060 RepID=A0A2N7WHV9_9BURK) HSP 1 Score: 60.1 bits (144), Expect = 4.840e-9 Identity = 32/55 (58.18%), Postives = 41/55 (74.55%), Query Frame = 1 Query: 19 VDSCQGSDADVIIISTVRSGGRRKLSGFMLDRSRVNVAISRAKQECIVVGDRDTL 183 VDS QGS+ADV+I+S VR+ R L GF+ DR R+NVA+SRAK + I+VG D L Sbjct: 1083 VDSFQGSEADVVILSLVRNNPRNAL-GFLRDRRRMNVALSRAKTQLIIVGSLDFL 1136
BLAST of mRNA_L-elsbetiae_contig6948.15719.1 vs. uniprot
Match: UPI001B959F51 (AAA domain-containing protein n=2 Tax=Burkholderia cepacia complex TaxID=87882 RepID=UPI001B959F51) HSP 1 Score: 60.1 bits (144), Expect = 4.840e-9 Identity = 32/55 (58.18%), Postives = 41/55 (74.55%), Query Frame = 1 Query: 19 VDSCQGSDADVIIISTVRSGGRRKLSGFMLDRSRVNVAISRAKQECIVVGDRDTL 183 VDS QGS+ADV+I+S VR+ R L GF+ DR R+NVA+SRAK + I+VG D L Sbjct: 1083 VDSFQGSEADVVILSLVRNNPRNAL-GFLRDRRRMNVALSRAKAQLIIVGSLDFL 1136
BLAST of mRNA_L-elsbetiae_contig6948.15719.1 vs. uniprot
Match: A0A5A8DY40_CAFRO (AAA domain-containing protein n=5 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DY40_CAFRO) HSP 1 Score: 59.3 bits (142), Expect = 9.060e-9 Identity = 27/54 (50.00%), Postives = 41/54 (75.93%), Query Frame = 1 Query: 19 VDSCQGSDADVIIISTVRSGGRRKLSGFMLDRSRVNVAISRAKQECIVVGDRDT 180 VDS QG +A+ +++S VRS R ++ GF+ D R+NVA++RA++ C+VVGD DT Sbjct: 860 VDSYQGQEAEAVVLSLVRSNARGEV-GFLADSRRINVAVTRARRLCVVVGDSDT 912 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6948.15719.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig6948.15719.1 >prot_L-elsbetiae_contig6948.15719.1 ID=prot_L-elsbetiae_contig6948.15719.1|Name=mRNA_L-elsbetiae_contig6948.15719.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=61bp MPKQTQVDSCQGSDADVIIISTVRSGGRRKLSGFMLDRSRVNVAISRAKQback to top mRNA from alignment at L-elsbetiae_contig6948:7845..8027+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig6948.15719.1 ID=mRNA_L-elsbetiae_contig6948.15719.1|Name=mRNA_L-elsbetiae_contig6948.15719.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=183bp|location=Sequence derived from alignment at L-elsbetiae_contig6948:7845..8027+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig6948:7845..8027+ >mRNA_L-elsbetiae_contig6948.15719.1 ID=mRNA_L-elsbetiae_contig6948.15719.1|Name=mRNA_L-elsbetiae_contig6948.15719.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=366bp|location=Sequence derived from alignment at L-elsbetiae_contig6948:7845..8027+ (Laminarionema elsbetiae ELsaHSoW15)back to top |