mRNA_L-elsbetiae_contig6948.15718.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6948.15718.1
Unique NamemRNA_L-elsbetiae_contig6948.15718.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6948.15718.1 vs. uniprot
Match: A0A6H5JRT8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRT8_9PHAE)

HSP 1 Score: 219 bits (559), Expect = 1.170e-63
Identity = 123/230 (53.48%), Postives = 159/230 (69.13%), Query Frame = 1 
Query:    7 LRLASPISWRKQYLLRKFPGLSRLWSLEDASFAVTGTGKKAQQLRKRGRAAALWAFALENVLQANYDKRLKNGSRGQRRMFRQLIALDSIQALLQAGHAFVTAILLRLQLLTRLRILTKTMVFISTIDSSENSLRWLKRDITDTAMGLRLSRKVKLPMITIDTVILDEAACVLEPAIPVLLSLGTKNLTLVGDHNQLRPFSQVREGKASMNHARSLMERAINSGVTPQFL 696
            L  A  +SWR+ +L   FPG++RL +LE  S   TGTG+K  +LR+ GR A  WAFAL  VL+AN+ KRL+NGSR QR M RQL ALD    LL  G + V ++L+RL+ LTR RI T+T V I T+DS+E  +R ++    + A+ +          +T+DT I+DEAACVLE A+PVLL+LG KNLTLVGDH QL+PFSQVRE +A  +H+RSLMERAI+SG   QFL
Sbjct:  373 LEKAKAVSWRRLHL-PSFPGIARLLALEQESLRSTGTGEKHDKLRRSGRTAGKWAFALTCVLKANFYKRLENGSRAQRLMLRQLNALDKWVRLLSQGASRVASLLMRLEGLTRFRIFTETRVLICTVDSTERMVRTMEEGTREAAIAIGHELDASSCRLTLDTAIMDEAACVLEAAVPVLLALGIKNLTLVGDHRQLQPFSQVRENEAGKHHSRSLMERAIDSGRANQFL 601
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BLAST of mRNA_L-elsbetiae_contig6948.15718.1 vs. uniprot
Match: D7FY65_ECTSI (AAA_12 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY65_ECTSI)

HSP 1 Score: 119 bits (299), Expect = 2.310e-27
Identity = 77/161 (47.83%), Postives = 100/161 (62.11%), Query Frame = 1 
Query:    7 LRLASPISWRKQYLLRKFPGLSRLWSLEDASFAVTGTGKKAQQLRKRGRAAALWAFALENVLQANYDKRLKNGSRGQRRMFRQLIALDSIQALLQAGHAFVTAILLRLQLLTRLRILTKTMVFISTIDSSENSLRWLKRDITD----TAMGLRLSRKVKLP 477
            L+ A  +SW + +L   FPG++RL++LE  S   TGTGKK  QLR+ GRAA  WAFAL+ VL+AN+ KRL NGS  QR M  QL ALD    LL  G + V ++L+RL+ LTR RI T+T V I T+DS+E  +  +     D    TA  LRL+R    P
Sbjct:  388 LKSAQAVSWSRLHL-PNFPGVARLFALEQESLKSTGTGKKHHQLRRSGRAAGKWAFALKRVLKANFYKRLVNGSLAQRLMLHQLKALDKWVRLLSEGASRVASLLMRLEGLTRFRIFTETRVLICTVDSTERMV--VSSTFYDGKLKTAEELRLTRMSHQP 545
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BLAST of mRNA_L-elsbetiae_contig6948.15718.1 vs. uniprot
Match: E1ZLN5_CHLVA (Expressed protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZLN5_CHLVA)

HSP 1 Score: 60.5 bits (145), Expect = 5.550e-7
Identity = 42/115 (36.52%), Postives = 55/115 (47.83%), Query Frame = 1 
Query:  352 ILTKTMVFISTIDSSENSLRWLKRDITDTAMGLRLSRKVKLPMITIDTVILDEAACVLEPAIPVLLSLGTKNLTLVGDHNQLRPFSQVREGKASMNHARSLMERAINSGVTPQFL 696
            IL  T V+  TIDS+   +  L     D               + +DT+++DEA CV E A+P L+ L   NL LVGDH QL  +S +       NH RS MERA+   V    L
Sbjct:  455 ILASTRVYACTIDSTPRMVFELADHGVD---------------VDVDTILMDEAGCVAEMAVPPLIKLAPANLVLVGDHLQLPAYSDL--VSPPPNHVRSFMERAVALAVPAAML 552
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BLAST of mRNA_L-elsbetiae_contig6948.15718.1 vs. uniprot
Match: A0A2P6VHN8_9CHLO (Putative ATP-dependent helicase-like n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VHN8_9CHLO)

HSP 1 Score: 56.2 bits (134), Expect = 8.460e-6
Identity = 30/70 (42.86%), Postives = 42/70 (60.00%), Query Frame = 1 
Query:  487 IDTVILDEAACVLEPAIPVLLSLGTKNLTLVGDHNQLRPFSQVREGKASMNHARSLMERAINSGVTPQFL 696
            +D+V++DEA CV E A+P L+ L   NL L+GD  QL  ++ +       NH RS MERA++ GV    L
Sbjct:   14 LDSVLIDEAGCVSEMALPTLICLAPSNLVLIGDPLQLPAYTDL--VSPPHNHCRSFMERAVSFGVPAALL 81
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BLAST of mRNA_L-elsbetiae_contig6948.15718.1 vs. uniprot
Match: A0A7S3B264_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3B264_9EUKA)

HSP 1 Score: 50.4 bits (119), Expect = 8.490e-5
Identity = 34/83 (40.96%), Postives = 48/83 (57.83%), Query Frame = 1 
Query:  415 LKRDITDTAMGLRLSRKVKLPMITIDTVILDEAACVLEPAIPVLLSLGTKNLTLVGDHNQLRPFSQVREGKASMNHARSLMER 663
            L+RD+ +   G     K ++  +T D VILDEAA +LEP     L  G K + LVGDH QL PFS+ R+ + +  +  S+M R
Sbjct:    2 LQRDMEEGGRG----GKQQVEPLTFDFVILDEAAAMLEPDAIGCLLHGAKAVLLVGDHQQLPPFSKWRDAE-TQRYTVSMMAR 79
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6948.15718.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JRT8_9PHAE1.170e-6353.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FY65_ECTSI2.310e-2747.83AAA_12 domain-containing protein n=1 Tax=Ectocarpu... [more]
E1ZLN5_CHLVA5.550e-736.52Expressed protein n=1 Tax=Chlorella variabilis Tax... [more]
A0A2P6VHN8_9CHLO8.460e-642.86Putative ATP-dependent helicase-like n=1 Tax=Micra... [more]
A0A7S3B264_9EUKA8.490e-540.96Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6948contigL-elsbetiae_contig6948:5603..6299 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score121.3
Seed ortholog evalue5.9e-25
Seed eggNOG ortholog2880.D7FY65
Hectar predicted targeting categorymitochondrion
EggNOG free text desc.nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
EggNOG OGsCOG1112@1,KOG1802@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size697
Cds size696
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816770.2797184-CDS-L-elsbetiae_contig6948:5602..62981622816770.2797184-CDS-L-elsbetiae_contig6948:5602..6298Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6948 5603..6298 +
1691683800.2080915-CDS-L-elsbetiae_contig6948:5602..62981691683800.2080915-CDS-L-elsbetiae_contig6948:5602..6298Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6948 5603..6298 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6948.15718.1prot_L-elsbetiae_contig6948.15718.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6948 5603..6298 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6948.15718.1

>prot_L-elsbetiae_contig6948.15718.1 ID=prot_L-elsbetiae_contig6948.15718.1|Name=mRNA_L-elsbetiae_contig6948.15718.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=232bp
AALRLASPISWRKQYLLRKFPGLSRLWSLEDASFAVTGTGKKAQQLRKRG
RAAALWAFALENVLQANYDKRLKNGSRGQRRMFRQLIALDSIQALLQAGH
AFVTAILLRLQLLTRLRILTKTMVFISTIDSSENSLRWLKRDITDTAMGL
RLSRKVKLPMITIDTVILDEAACVLEPAIPVLLSLGTKNLTLVGDHNQLR
PFSQVREGKASMNHARSLMERAINSGVTPQFL
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mRNA from alignment at L-elsbetiae_contig6948:5603..6299+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6948.15718.1 ID=mRNA_L-elsbetiae_contig6948.15718.1|Name=mRNA_L-elsbetiae_contig6948.15718.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=697bp|location=Sequence derived from alignment at L-elsbetiae_contig6948:5603..6299+ (Laminarionema elsbetiae ELsaHSoW15)
GCGGCTTTACGCCTGGCGTCTCCGATCTCCTGGCGGAAGCAATATCTTCT
CAGGAAGTTCCCCGGCCTTTCTCGGCTGTGGAGTCTTGAGGATGCATCGT
TTGCCGTAACGGGAACAGGAAAGAAGGCCCAACAGCTTCGGAAGAGGGGT
AGGGCAGCGGCCTTGTGGGCGTTCGCCCTTGAGAACGTGCTCCAGGCCAA
CTACGATAAGCGCCTCAAGAACGGGAGCCGCGGCCAGCGCCGCATGTTCC
GCCAGCTTATTGCTCTCGACAGCATCCAAGCTCTTCTCCAGGCCGGGCAC
GCTTTCGTGACGGCAATCCTTCTCCGGCTGCAACTCCTCACACGCCTCCG
CATCCTAACCAAGACAATGGTATTCATCTCCACGATCGACAGCTCGGAGA
ACTCCCTCCGCTGGCTCAAGAGAGACATCACGGACACCGCGATGGGGCTT
CGGCTTTCCCGCAAGGTGAAACTACCCATGATCACCATCGACACCGTCAT
ACTGGATGAAGCGGCATGCGTCCTCGAGCCGGCGATCCCCGTCCTCCTTT
CCCTGGGAACGAAAAACCTCACGCTCGTAGGGGACCACAACCAGCTGCGG
CCTTTCTCCCAGGTTCGGGAGGGTAAGGCGAGCATGAACCACGCCAGGAG
CCTTATGGAACGTGCGATCAACAGTGGGGTGACCCCGCAGTTCTTGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6948:5603..6299+

>mRNA_L-elsbetiae_contig6948.15718.1 ID=mRNA_L-elsbetiae_contig6948.15718.1|Name=mRNA_L-elsbetiae_contig6948.15718.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1392bp|location=Sequence derived from alignment at L-elsbetiae_contig6948:5603..6299+ (Laminarionema elsbetiae ELsaHSoW15)
GCGGCTTTACGCCTGGCGTCTCCGATCTCCTGGCGGAAGCAATATCTTCT
CAGGAAGTTCCCCGGCCTTTCTCGGCTGTGGAGTCTTGAGGATGCATCGT
TTGCCGTAACGGGAACAGGAAAGAAGGCCCAACAGCTTCGGAAGAGGGGT
AGGGCAGCGGCCTTGTGGGCGTTCGCCCTTGAGAACGTGCTCCAGGCCAA
CTACGATAAGCGCCTCAAGAACGGGAGCCGCGGCCAGCGCCGCATGTTCC
GCCAGCTTATTGCTCTCGACAGCATCCAAGCTCTTCTCCAGGCCGGGCAC
GCTTTCGTGACGGCAATCCTTCTCCGGCTGCAACTCCTCACACGCCTCCG
CATCCTAACCAAGACAATGGTATTCATCTCCACGATCGACAGCTCGGAGA
ACTCCCTCCGCTGGCTCAAGAGAGACATCACGGACACCGCGATGGGGCTT
CGGCTTTCCCGCAAGGTGAAACTACCCATGATCACCATCGACACCGTCAT
ACTGGATGAAGCGGCATGCGTCCTCGAGCCGGCGATCCCCGTCCTCCTTT
CCCTGGGAACGAAAAACCTCACGCTCGTAGGGGACCACAACCAGCTGCGG
CCTTTCTCCCAGGTTCGGGAGGGTAAGGCGAGCATGAACCACGCCAGGAG
CCTTATGGAACGTGCGATCAACAGTGGGGTGACCCCGCAGTTCTTGGCGG
CTTTACGCCTGGCGTCTCCGATCTCCTGGCGGAAGCAATATCTTCTCAGG
AAGTTCCCCGGCCTTTCTCGGCTGTGGAGTCTTGAGGATGCATCGTTTGC
CGTAACGGGAACAGGAAAGAAGGCCCAACAGCTTCGGAAGAGGGGTAGGG
CAGCGGCCTTGTGGGCGTTCGCCCTTGAGAACGTGCTCCAGGCCAACTAC
GATAAGCGCCTCAAGAACGGGAGCCGCGGCCAGCGCCGCATGTTCCGCCA
GCTTATTGCTCTCGACAGCATCCAAGCTCTTCTCCAGGCCGGGCACGCTT
TCGTGACGGCAATCCTTCTCCGGCTGCAACTCCTCACACGCCTCCGCATC
CTAACCAAGACAATGGTATTCATCTCCACGATCGACAGCTCGGAGAACTC
CCTCCGCTGGCTCAAGAGAGACATCACGGACACCGCGATGGGGCTTCGGC
TTTCCCGCAAGGTGAAACTACCCATGATCACCATCGACACCGTCATACTG
GATGAAGCGGCATGCGTCCTCGAGCCGGCGATCCCCGTCCTCCTTTCCCT
GGGAACGAAAAACCTCACGCTCGTAGGGGACCACAACCAGCTGCGGCCTT
TCTCCCAGGTTCGGGAGGGTAAGGCGAGCATGAACCACGCCAGGAGCCTT
ATGGAACGTGCGATCAACAGTGGGGTGACCCCGCAGTTCTTG
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