mRNA_L-elsbetiae_contig1182.1571.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1182.1571.1
Unique NamemRNA_L-elsbetiae_contig1182.1571.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1182.1571.1 vs. uniprot
Match: A0A6H5JH06_9PHAE (WW domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH06_9PHAE)

HSP 1 Score: 157 bits (397), Expect = 1.510e-42
Identity = 77/97 (79.38%), Postives = 89/97 (91.75%), Query Frame = 1 
Query:    1 SPSGFVGVCSSATRTREGLAVRVSASMLKRHRPKDRGMHMMSLGSLRPTLREYDSVTGLGRVMLRSNLLTGRPGGSAGNLVDNLGRPFVKWLEEKFN 291
            SP+GF+GV SS++RTREGLAVRVS +M+K HRP+DR M++MSLGSLRPTLREYDSVTGLGRVMLR+NLLTG+PG S GNLVDNLG PFV+WLE KFN
Sbjct:   20 SPNGFLGVVSSSSRTREGLAVRVSINMVKLHRPQDRAMYIMSLGSLRPTLREYDSVTGLGRVMLRANLLTGKPGESTGNLVDNLGLPFVQWLENKFN 116
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BLAST of mRNA_L-elsbetiae_contig1182.1571.1 vs. uniprot
Match: D7G8X2_ECTSI (WW domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8X2_ECTSI)

HSP 1 Score: 115 bits (287), Expect = 1.040e-27
Identity = 54/64 (84.38%), Postives = 60/64 (93.75%), Query Frame = 1 
Query:  100 KDRGMHMMSLGSLRPTLREYDSVTGLGRVMLRSNLLTGRPGGSAGNLVDNLGRPFVKWLEEKFN 291
            +DR M++MSLGSLRPTLREYDSVTGLGRVMLR+NLLTG+PGGS GNLVDNLG PFV+WLE KFN
Sbjct:  117 RDRAMYIMSLGSLRPTLREYDSVTGLGRVMLRANLLTGKPGGSTGNLVDNLGLPFVQWLENKFN 180
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1182.1571.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JH06_9PHAE1.510e-4279.38WW domain-containing protein n=1 Tax=Ectocarpus sp... [more]
D7G8X2_ECTSI1.040e-2784.38WW domain-containing protein n=1 Tax=Ectocarpus si... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1182contigL-elsbetiae_contig1182:20199..25799 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score114.8
Seed ortholog evalue2.3e-23
Seed eggNOG ortholog2880.D7G8X2
KEGG koko:K10706
Hectar predicted targeting categoryother localisation
EggNOG free text desc.positive regulation of termination of RNA polymerase II transcription, poly(A)-coupled
EggNOG OGsCOG1112@1,KOG1801@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03021
Exons3
Model size299
Cds size297
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1182.1571.1prot_L-elsbetiae_contig1182.1571.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1182 20199..25799 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815385.2384238-CDS-L-elsbetiae_contig1182:20198..202701622815385.2384238-CDS-L-elsbetiae_contig1182:20198..20270Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1182 20199..20270 -
1691682872.280747-CDS-L-elsbetiae_contig1182:20198..202701691682872.280747-CDS-L-elsbetiae_contig1182:20198..20270Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1182 20199..20270 -
1622815385.2560534-CDS-L-elsbetiae_contig1182:23207..233611622815385.2560534-CDS-L-elsbetiae_contig1182:23207..23361Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1182 23208..23361 -
1691682872.2919416-CDS-L-elsbetiae_contig1182:23207..233611691682872.2919416-CDS-L-elsbetiae_contig1182:23207..23361Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1182 23208..23361 -
1622815385.2693884-CDS-L-elsbetiae_contig1182:25728..257991622815385.2693884-CDS-L-elsbetiae_contig1182:25728..25799Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1182 25729..25799 -
1691682872.3014176-CDS-L-elsbetiae_contig1182:25728..257991691682872.3014176-CDS-L-elsbetiae_contig1182:25728..25799Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1182 25729..25799 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1182.1571.1

>prot_L-elsbetiae_contig1182.1571.1 ID=prot_L-elsbetiae_contig1182.1571.1|Name=mRNA_L-elsbetiae_contig1182.1571.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=99bp
SPSGFVGVCSSATRTREGLAVRVSASMLKRHRPKDRGMHMMSLGSLRPTL
REYDSVTGLGRVMLRSNLLTGRPGGSAGNLVDNLGRPFVKWLEEKFNE*
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mRNA from alignment at L-elsbetiae_contig1182:20199..25799-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1182.1571.1 ID=mRNA_L-elsbetiae_contig1182.1571.1|Name=mRNA_L-elsbetiae_contig1182.1571.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5601bp|location=Sequence derived from alignment at L-elsbetiae_contig1182:20199..25799- (Laminarionema elsbetiae ELsaHSoW15)
AGTCCGAGCGGCTTTGTCGGGGTGTGCTCGTCGGCTACCCGGACCAGAGA
GGGTCTGGCCGTCCGAGTCAGGTAAGGATGAGGGTTACGGTAGAGAGAGA
GGAGAGGATCTATCTCACAAGATCTATCTCACAGGGGTGGTGTAGGGAGA
GAGGAGGGGATCTATCTCACAAGATCTATCTCACAGGGGTGGTGTAGGGA
GAGAGGAGAGAGGGATGGGATCTGTCTCACAAGGGTGGGGTCGGAAGAGA
GGAGATATTGAGGGGATCTGTCTCACAAGGGTGGGGGTAGGGAGAGAGGA
GAGAAGAGAGGGGATCCGTCTCACAAGGGTGGGTTAGGAAGAGAGGAGAG
ATGGGATCTACACAAGGGAGGACGGAAAGGGAAGATAGAAGGGGATCTGC
ACCACAATCGCAAGGGTGAGGGTAGGGAGAGAGGAGAGAGGGAGGGGATC
TATCCCTCAAGGGAAAGAGTAGGAAGATGAGAGATGGGAGGAGGTCTGGT
AAAGGTAAGGAGAGGAGAGATAGTAGGGGATCTATTCCAAAAGAGCAAAG
GTAAGGAGGGAAGAGAGAGCATGGAACGTATCTCCCACGGGTAATAGTAG
GGAGAGGAGAGATGGGAGGAGGTCTGATAAGGGTAAGGAGATAAGAGATA
GGAGGGGATCTATTCCAAAAGAGCAAAGGTAAGCAGGGAAGAGAGAGCAT
GGAACCTATCTCCCACGGGTAATGCAAGGGAGACAAGAGAGGGGAGGGGT
CTACCTCGCAACAGCACCACCAGGTATTTTCGAGATTGCGGCATAACTGT
CGCCGCTTGCGGCGGAACCGGGAAAATGTGCATCTGGCGCGGGGTGTAGA
AGCACATACGAAGTGGCATTTAGCATTATTTCACGTTTCAGGTGGGATGC
TCGGGGTTTGGCCGTAAGTCGCTCAATACGGAACATGTGACGAGTGAAGA
AGTAAAGAGCAATCCGAGCTAAATATGCATGATAAGTAAACGTTTCTTTT
TTTTTAGCTGTAACAAGAAAGATAACACACCCCCTGGGCCGATTTTCAAA
GCTCGGTTACTCCGCGACGAGTATGATTCTAGTACCGAACGGCACGCTTT
CGGGCAGAGCCCTTGATGAGATCTTTCCAACGCCGCCCTTTTCGGGACTG
CCGCTTTTCTCCCTGTAGAGTACTTGAGCTTTGAAAATCGGTCCAGGGGG
TGTCTTATCTTGTGTCATAGTATGCCATACACGGTATGCTGCCAACGAGT
CTCGGGTGTATAATACCGGGTACTCCGGGACATGCGGCAGAAGGCGTTGG
TGCAGGGGCACGGCCGGTCCAATTCGCTGGTGTTTGTTTGGAGATGAGCG
CTCGTTTTCTATCCGGCGATAAATAAGCGTTCGTTTTTTTTGTTTTTGTT
TTACCTTACTTTGCTTCTCTCTCTTTTTCAGCTTGCCTGAGACGCTTGTC
TGCTTTGTGCTCAGTAGCCTACGCAGTGTGTTTTTCCCGATTTCCATACT
TTTATCTGGTATGTTTGCTTGATGTGTTTTTGGTTCTGGGTGTTAGGTTA
GGATAAGGGTTAGGGTTGCGGAGCCCCTTACTCTATTTCCCATATAATTA
AAAGTTAATTTTCTTGCGTACAGGCGGTCCTTTGTACTCCTCGCTCTCGT
GGCTCGTTTCTCGGGCTTCGACTCTCCCCTCTCTCTCTTGTCTTCTCTTT
TCCGTGTCCGCGCCGGAGTGCCGAAAATACAGCATCGATCCCATAGGACC
GCTGCATGCACGTCAAGGTTGACATGCCGAAACTACAGCATCGATCCCAG
AGGACCGCTGCGTGTACATTGGGGTTCTCGGAACACTGCTGTCTGTTGTG
GCCCTTTCTTTGTACATACAAGAGTATGTAGTATGTTTCGTTTTTTCGTT
TTTTCCGATCCGCCGACACCGATCAGGCCCAGCTGTTTTTGTCGTTGTCT
TGTATTGAACGGCAGTTCTGCTCTGTGCTCCGCTCTTTTTCTCCTTTGGC
GGACTCTCGTCTCTCCTCTCGTCTCTCTCTCTCTCTTTCTCTCTCTCTCT
CTCTCTCTCTCTCTTTCTCTTTTTCCTTGTCAATTTTCGGGCTTCGACTT
CTCTCGTCTCTTTCGTCTCTCTCTTTCTCGTTTTCCGTGTCAGTTTTCGG
GCTTCGACTTCTCTCGTCTCTCTCTCCCCTCTCTTTCTCGTTTTCCACGT
CATTTTTCGGGCTTCGACTCTCTCGTCTCTCTCTCTCTCTTTGAAAGATA
AATCAGATACATAGTTAAAATCGGAAGCAACCTAGCCCACATTTGAGACG
GGACCGGACTCCGTGGGGTTCAACCGGTATTCCATACAGTGACGTCATAT
TGGCCCGGCCCTCTTTCTCTTTTTCCGTGTCGTTTTTCTCGTCTCTCCTG
TCTCTCTCGCCTCTTCTCTTCTCTTTTCCCGCTACCAGCGCCTCCATGCT
GAAGCGGCACCGGCCCAAGGACCGCGGCATGCACATGATGTCTCTCGGAT
CCCTGAGGCCGACCCTCCGAGAGTACGACTCCGTGACCGGCCTCGGCAGG
GTGATGCTGAGGAGCAACCTGCTGACAGGCAGGCCGGGCGGGGTAAGTAA
ATTAGGAACGAACGGTAGCTCTTACAGCAGCAGGGCCGTGGCGCGTTCCA
CAGGGCTGTCGGCTCGATTATGGGTGCGCCAAAAGATTGAGAAAGTTCGC
GCAACATCAGTCCGTAAAATGTGGTAGATCAAGGGGGCATGCGGGCTGCA
ATGCCCAACACCTATGCCCCCCCGTTTCGATTTTGTTTTGGGCCTAATCC
AGTTTGTTTTCTATTTATATAGGAAATAGTAAGGGGGAGACCCATGGGGG
TTATACCCCGCACGCGGCGCCCCATTACAAAGCTAGGCTGCAGCCCCCCC
GCAAAAAATACATATATTATTTAGTATGCCCCCCCCCCCCCTTGGGTTTG
TTTTGGCCAAGCTCAGTTTGTCGGCATAGGTGTTGGGTATTGCAACCCGC
ATGCCCCTTTGGGTAGATACAGGGGGAGGGTACGCGATATCGCTCCGGGG
GGGGGGCAGCCTGCTGACGGGCAGGCCGGGCGGGGTGAGAAAGAACGAAC
GAACGATGCAACAGTAGAAAGGCAATGCTGGCGTTGATGGTGGCAGAGAA
AGACAGGAGACGTCCAACAGACCAATCATATCACGATCCACTCTCTCCAG
CAGTGCAACCCCCTTGTTGTTTTGTTCTTGACATTTATTTGAAATGCTCG
ACGGGCTCCTTTTGCCACGAGGGCAATTTCCAATTTCTACTGAACCGTGG
TCAGACAGAAGCGTTCCTTTCCCCGAGGCCCCCCACTCCCACCTTCTGCC
GTGCTCGCCCCCCTTAAGGTTTTTATCGCGAGAAGGGTTTAGCCGTCCCA
TTCCCTCGTCGACGGTGACGTCGAAGTTCGAAGTTTGTGCACACACTATG
TAAGTGTTGTCCACTGACAGGGATGAACGCGAGAGAAAAAAAACACTTTC
TGCGAGAAACCCTTGGGACTTCAAAAAATTGGGCATAATTGTACAGTTAA
ATTTTTCCACCACGTGTACCCCCCTTTTTCTCGCTCAAAATTGAGAGTTA
TCAAATAAAACAAAGTGCGTTGTGATCGTATAGGCTATGGGAATGCAAAG
TCATCGGCGTTTTGGACATCAGAGGACCTTTGGTGATTTCGTATACTAAG
ATCAAGTGTGCGCGAAAATTGGAACGATGCAGCTCACATTTTCGGCAGAT
TTTGTTCGACACATTTTGAGCGAACAAAAATGAGTTGAAAGAAAAGAGAG
AGTGTTTTGAACTCCCTGTAACGAGCACAAGCAGATGGTTAAATAACATT
TTCCAATAAGTGCACTCGATGCGGGCTGAAGTTGCCCAATTTCGATGAGG
AAACTTTGCATGGCCATATCTCTCTGCAAAACGTTTTTTTCGGGAAAAAA
AAAAAATCCGGCCTGGGCAAAGGTCCAATTCGCCGGAATCCGTCGAGTTT
TTTTAGTTGTATTGGTTCAAATTTCTTCAAAAAAACACACAAAATGGCTG
CCTCAAATCAGGGTTTTCACCCTGTTCTCCCTCAAATAATTTTTTGTGGA
GAAACCACCTGAACGCGGCCTGGACAAAGGGCCAATTCGTCCGAATCCGT
CGAGTTTTTTTCTTTCTATCGGCTCAAATTTCTTCAAAAAACCAAGCAAA
ATATCTCTGGGGGAATTGAATTTGTTCGACACCGAGAAGGCAAAACAAAA
CCTTCTCCGATCACATGATCCGCCTGAAACAGGGCTTTCTTTCGATGTAT
CGCATGTCACCTGGGGGTGTGCTAGTCGCTCGGAATATTACTCACAGTGA
ATTGGGAGTTTGTGGAACAAAATTACTGCTTAGACTATAGTAATATTGTG
TTTTGTTTTCGCCGCCTGCCGGGGTATATTTAGCGTACGAAATACCGCAC
CAATACGGTTGATGGTTGGTGATGCTCAAGGGGAATCCGGGCGGGGTCGG
CAATACAGACGATACATACCGTATATGACACAAGATACCACCCCCCCCTG
CTGGGCATGTTTTCAAAGTTCGATTAAATACTCCGTAACGAAGACGGTGC
CCCAGCACCAAACGACACGTTTTCGGACAGCTATCGACGAGATTTTCCGA
CGCCACCCTTTTCGGCACTGTCATTCTTCTCGCTGGGGAGGAATCGAGCT
TCGAAAAGCCGTCCAGGGGGGGGTGGTATCTTGTGTCACCTACGGTACGG
GGTTTCCAAGGACCCTGGGATGTTTTTATCGGGTCGGGAGTGGTTGCTAC
GTTACATGTACACAAAAGTATTCATGTATTTCATCCTGGTACAATTGTAT
GTGTTTTTTTTTTTTGACGTAAGGTTTACATCCGGGTGACTATTTGGGTC
AATGGATAGGTGACACAAGATATCACCCCCCTCCTGGACCGACTTTCAGA
GCAGCTCCATTACTCCGCAATGAAGAGGGTGCCAGCACCAAACGACGCAT
TATCGGACAGCCCTCGGCTATTGTAGATGTTTCCGACGCCATCTCCTTTC
GACACTGGCACTCTTCTTGCTGGGGAGGAATCGAGCATTGAAAATCTGTC
CAGGGGGGGTGGTATCTGGTGTCACCCACGACGGTACCAACAATCTCGGC
GGCTGAGGACTATTTAGGTCAATGTATAGGTGGATCGATTGCGGGGTTTT
GGGTTCCCCGCAACGTTGATTGCTTTTTTGCCTCTCCCATCAGCTATGGA
CCAGCATCGGCACACGCTTGCTCTCCCCCTTTAACGGCACCCTCTAAAAA
TATAAAATACCCCCCCCCTCTGCCCGTTATTGTTATTATTTTTCCCTGTA
CATATGTTCGTGTTAGGGACCAGCAAAACATCCTGCCACTGCCGCTGTCA
TTGCAAAGAAACACCTGTATGCTCGTGTTTGGATCAACCAAACATCATGT
CACTGCCGCTCGCTGTCATCGTAAATTGACGCCTCTTTTTCCTTCGCTTC
TTCGTGACGTCACTCCTGGTTCGGTTCAGTCGGCCGGTAACCTGGTGGAC
AACCTGGGACGGCCTTTCGTGAAGTGGCTTGAGGAGAAGTTCAACGAGTG
A
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1182:20199..25799-

>mRNA_L-elsbetiae_contig1182.1571.1 ID=mRNA_L-elsbetiae_contig1182.1571.1|Name=mRNA_L-elsbetiae_contig1182.1571.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=594bp|location=Sequence derived from alignment at L-elsbetiae_contig1182:20199..25799- (Laminarionema elsbetiae ELsaHSoW15)
AGTCCGAGCGGCTTTGTCGGGGTGTGCTCGTCGGCTACCCGGACCAGAGA
GGGTCTGGCCGTCCGAGTCAGAGTCCGAGCGGCTTTGTCGGGGTGTGCTC
GTCGGCTACCCGGACCAGAGAGGGTCTGGCCGTCCGAGTCAGCGCCTCCA
TGCTGAAGCGGCACCGGCCCAAGGACCGCGGCATGCACATGATGTCTCTC
GGATCCCTGAGGCCGACCCTCCGAGAGTACGACTCCGTGACCGGCCTCGG
CAGGGTGATGCTGAGGAGCAACCTGCTGACAGGCAGGCCGGGCGGGCGCC
TCCATGCTGAAGCGGCACCGGCCCAAGGACCGCGGCATGCACATGATGTC
TCTCGGATCCCTGAGGCCGACCCTCCGAGAGTACGACTCCGTGACCGGCC
TCGGCAGGGTGATGCTGAGGAGCAACCTGCTGACAGGCAGGCCGGGCGGG
TCGGCCGGTAACCTGGTGGACAACCTGGGACGGCCTTTCGTGAAGTGGCT
TGAGGAGAAGTTCAACGAGTGATCGGCCGGTAACCTGGTGGACAACCTGG
GACGGCCTTTCGTGAAGTGGCTTGAGGAGAAGTTCAACGAGTGA
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