mRNA_L-elsbetiae_contig6929.15700.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6929.15700.1
Unique NamemRNA_L-elsbetiae_contig6929.15700.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6929.15700.1 vs. uniprot
Match: A0A6H5JTT4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTT4_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 1.270e-10
Identity = 45/108 (41.67%), Postives = 55/108 (50.93%), Query Frame = 1 
Query:    1 CCLLTCGTNVSPEDKRSFCGKDLNQLTGPFDCLDPAAGIVCEGAD--------GDPTTTNNAICDPDNNIEECAYDGGDCCTSSCEDSEDGMVCGAEE-NGGFDCKDP 297
            CC  TC       D    CG     + G FDC+DP+A  V +           G+  T  N  CD DNN EECAYDGGDCC  +CE S  G+  G++    GFDC+DP
Sbjct:  347 CCSCTC------VDGTYECG-----IVG-FDCVDPSAECVDDDYPSTGVTDDCGNAGTVANGYCDFDNNKEECAYDGGDCCECTCEPS--GLEDGSDSCTSGFDCQDP 440
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BLAST of mRNA_L-elsbetiae_contig6929.15700.1 vs. uniprot
Match: D7G3F4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3F4_ECTSI)

HSP 1 Score: 65.1 bits (157), Expect = 4.340e-10
Identity = 44/112 (39.29%), Postives = 52/112 (46.43%), Query Frame = 1 
Query:    1 CCLLTCGTNVSPEDKRSFCGKDLNQLTGPFDCLDPAAGIVCEGADGDPTTTN------------NAICDPDNNIEECAYDGGDCCTSSCEDSEDGMVCGAEENGGFDCKDPN 300
            CC  TC    SP D       D +     F C+DP+A  V    D D  T +            N  CD +NN EEC YDGGDCC+ +CE   D     + E G FDCKDPN
Sbjct:  220 CCECTCEYE-SPYDWDD----DWDYHCMEFACIDPSAPCV----DDDDITVDMVENCGYVSGIGNGWCDRNNNKEECGYDGGDCCSCTCESPYDDDYSCSSEYGSFDCKDPN 322
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BLAST of mRNA_L-elsbetiae_contig6929.15700.1 vs. uniprot
Match: A0A6H5KB04_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB04_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 2.080e-9
Identity = 42/111 (37.84%), Postives = 51/111 (45.95%), Query Frame = 1 
Query:    1 CCLLTCGTNVSPEDKRSFCGKDLNQLTGPFDCLDPAAGIVCEGADGDPTTT-----------NNAICDPDNNIEECAYDGGDCCTSSCEDSEDGMVCGAEENGGFDCKDPN 300
            CC  TC    SP D       D +     F C+DP A  V   +D D T              N  CD +NN EEC YDGGDCC+ +C+   D     + E G FDC+DPN
Sbjct:  120 CCECTCEYE-SPYDWDD----DWDYHCREFSCIDPNAACV---SDDDITVDMFENCGYVSGIGNGWCDRNNNKEECGYDGGDCCSCTCQSPYDDDYLCSSEYGSFDCQDPN 222
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BLAST of mRNA_L-elsbetiae_contig6929.15700.1 vs. uniprot
Match: A0A6H5JXR2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXR2_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 2.150e-9
Identity = 42/111 (37.84%), Postives = 51/111 (45.95%), Query Frame = 1 
Query:    1 CCLLTCGTNVSPEDKRSFCGKDLNQLTGPFDCLDPAAGIVCEGADGDPTTT-----------NNAICDPDNNIEECAYDGGDCCTSSCEDSEDGMVCGAEENGGFDCKDPN 300
            CC  TC    SP D       D +     F C+DP A  V   +D D T              N  CD +NN EEC YDGGDCC+ +C+   D     + E G FDC+DPN
Sbjct:  482 CCECTCEYE-SPYDWDD----DWDYHCREFSCIDPNAACV---SDDDITVDMFENCGYVSGIGNGWCDRNNNKEECGYDGGDCCSCTCQSPYDDDYLCSSEYGSFDCQDPN 584
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BLAST of mRNA_L-elsbetiae_contig6929.15700.1 vs. uniprot
Match: A0A6H5JM92_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM92_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 5.410e-9
Identity = 41/111 (36.94%), Postives = 51/111 (45.95%), Query Frame = 1 
Query:    1 CCLLTCGTNVSPEDKRSFCGKDLNQLTGPFDCLDPAAGIVCEGADGDPTTT-----------NNAICDPDNNIEECAYDGGDCCTSSCEDSEDGMVCGAEENGGFDCKDPN 300
            CC  TC  N   ED R             F C+DP+A  V    D D T              N  CD +NN EEC YDGGDCC+ +C+ + D     + E G FDC+DP+
Sbjct:  446 CCECTC-ENERDEDYRCM----------EFSCIDPSAPCV---NDDDVTIDMVENCGYVSGIGNGWCDRNNNKEECGYDGGDCCSCTCQSAYDDDYSCSSEYGYFDCQDPS 542
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BLAST of mRNA_L-elsbetiae_contig6929.15700.1 vs. uniprot
Match: D7FI88_ECTSI (Similar to Pappalysin-2 (Pregnancy-associated plasma protein-A2) (PAPP-A2) (Pregnancy-associated plasma protein-E1) (PAPP-E) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI88_ECTSI)

HSP 1 Score: 58.9 bits (141), Expect = 4.560e-8
Identity = 33/82 (40.24%), Postives = 43/82 (52.44%), Query Frame = 1 
Query:   88 FDCLDPAAGIVCEGADGDPTTTN------------NAICDPDNNIEECAYDGGDCCTSSCEDSEDGMVCGAEENGGFDCKDP 297
            F C+DP+A  V    D D  T +            N  CD +NN EEC YDGGDCC+ +C+ + D     + E G FDC+DP
Sbjct:    3 FACIDPSAPCV----DDDDVTVDMVENCGYVSGIGNGWCDRNNNKEECGYDGGDCCSCTCQSAYDDDYSCSSEYGYFDCQDP 80
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BLAST of mRNA_L-elsbetiae_contig6929.15700.1 vs. uniprot
Match: A0A6H5JRC1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRC1_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 4.850e-8
Identity = 30/72 (41.67%), Postives = 38/72 (52.78%), Query Frame = 1 
Query:   37 EDKRSFCGKDLNQLTGPFDC---LDPAAGIV----CEGADGDPTTTNNAICDPDNNIEECAYDGGDCCTSSC 231
            +D    C  D +  T   DC      +AGI     C GA GD  T  + +CDP+NN++EC YDGGDCC   C
Sbjct:  405 DDGDFVCSDDGDTCTVDSDCCVGFCGSAGICATEQCGGAGGDTATIEDMVCDPENNVDECQYDGGDCCECDC 476
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BLAST of mRNA_L-elsbetiae_contig6929.15700.1 vs. uniprot
Match: A0A6H5JF50_9PHAE (LNR domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF50_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 9.130e-8
Identity = 26/65 (40.00%), Postives = 32/65 (49.23%), Query Frame = 1 
Query:   37 EDKRSFCGKDLNQLTGPFDCLDPAAGIVCEGADGDPTTTNNAICDPDNNIEECAYDGGDCCTSSC 231
             D    C  D++   G        A   C G  GD  T  + +CDP+NN+EEC YDGGDCC   C
Sbjct:  592 SDDGDACAVDIDCCVGFCGSAGICATEECAGLGGDTATIEDMVCDPENNVEECQYDGGDCCECDC 656
[Close]
BLAST of mRNA_L-elsbetiae_contig6929.15700.1 vs. uniprot
Match: D7G0S4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0S4_ECTSI)

HSP 1 Score: 56.2 bits (134), Expect = 4.800e-7
Identity = 35/86 (40.70%), Postives = 41/86 (47.67%), Query Frame = 1 
Query:    1 CCLLTCGTNVSPEDKRSFCGKDLNQLTGPFDCLDPAAGIVCEGADGD--------PTTTNNAICDPDNNIEECAYDGGDCCTSSCE 234
            CC  TC    + E     CG+        F C+DP A  V E +           P +  N  CD DNNIEECAYDGGDCC  +CE
Sbjct:  226 CCECTCEDQPNQE-----CGR-----WSGFACIDPEAPCVDEDSFTVDMVESCKYPGSFGNGWCDEDNNIEECAYDGGDCCECTCE 301
[Close]
BLAST of mRNA_L-elsbetiae_contig6929.15700.1 vs. uniprot
Match: D7G0S3_ECTSI (LNR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0S3_ECTSI)

HSP 1 Score: 54.7 bits (130), Expect = 1.700e-6
Identity = 40/112 (35.71%), Postives = 49/112 (43.75%), Query Frame = 1 
Query:    1 CCLLTCGTNVSPEDKRSFCGKDLNQLTGPFDCLDPAAGIVCEGADGDPTTT-----------NNAICDPDNNIEECAYDGGDCCTSSCEDS-EDGMVCGAEENGGFDCKDPN 300
            CC  TC             G D +     F C+DP A  V    D D T              +  CD +NN E C YDGGDCC+ +CE   +D   CG  E+  FDCKDP+
Sbjct:   15 CCECTCE------------GDDDDYKCMQFSCIDPNAPCV---NDDDITVDMFDNCGYVSGIGDGWCDSNNNKEACGYDGGDCCSCTCESVWDDDYTCG--EDAFFDCKDPS 109
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6929.15700.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A6H5JTT4_9PHAE1.270e-1041.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G3F4_ECTSI4.340e-1039.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KB04_9PHAE2.080e-937.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXR2_9PHAE2.150e-937.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JM92_9PHAE5.410e-936.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FI88_ECTSI4.560e-840.24Similar to Pappalysin-2 (Pregnancy-associated plas... [more]
A0A6H5JRC1_9PHAE4.850e-841.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JF50_9PHAE9.130e-840.00LNR domain-containing protein n=2 Tax=Ectocarpus s... [more]
D7G0S4_ECTSI4.800e-740.70Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G0S3_ECTSI1.700e-635.71LNR domain-containing protein n=1 Tax=Ectocarpus s... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6929contigL-elsbetiae_contig6929:1216..3309 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.4
Seed ortholog evalue1.4e-07
Seed eggNOG ortholog2880.D7FTI5
Hectar predicted targeting categoryother localisation
EggNOG OGs2BFIX@1,2S176@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size312
Cds size312
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6929.15700.1prot_L-elsbetiae_contig6929.15700.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6929 1216..3309 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816768.3275766-CDS-L-elsbetiae_contig6929:1215..13331622816768.3275766-CDS-L-elsbetiae_contig6929:1215..1333Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6929 1216..1333 +
1691683798.6192193-CDS-L-elsbetiae_contig6929:1215..13331691683798.6192193-CDS-L-elsbetiae_contig6929:1215..1333Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6929 1216..1333 +
1622816768.3406854-CDS-L-elsbetiae_contig6929:2115..21721622816768.3406854-CDS-L-elsbetiae_contig6929:2115..2172Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6929 2116..2172 +
1691683798.6316478-CDS-L-elsbetiae_contig6929:2115..21721691683798.6316478-CDS-L-elsbetiae_contig6929:2115..2172Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6929 2116..2172 +
1622816768.3518434-CDS-L-elsbetiae_contig6929:2639..26771622816768.3518434-CDS-L-elsbetiae_contig6929:2639..2677Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6929 2640..2677 +
1691683798.6421127-CDS-L-elsbetiae_contig6929:2639..26771691683798.6421127-CDS-L-elsbetiae_contig6929:2639..2677Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6929 2640..2677 +
1622816768.3619173-CDS-L-elsbetiae_contig6929:3210..33091622816768.3619173-CDS-L-elsbetiae_contig6929:3210..3309Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6929 3211..3309 +
1691683798.655676-CDS-L-elsbetiae_contig6929:3210..33091691683798.655676-CDS-L-elsbetiae_contig6929:3210..3309Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6929 3211..3309 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6929.15700.1

>prot_L-elsbetiae_contig6929.15700.1 ID=prot_L-elsbetiae_contig6929.15700.1|Name=mRNA_L-elsbetiae_contig6929.15700.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=104bp
CCLLTCGTNVSPEDKRSFCGKDLNQLTGPFDCLDPAAGIVCEGADGDPTT
TNNAICDPDNNIEECAYDGGDCCTSSCEDSEDGMVCGAEENGGFDCKDPN
EGR*
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mRNA from alignment at L-elsbetiae_contig6929:1216..3309+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6929.15700.1 ID=mRNA_L-elsbetiae_contig6929.15700.1|Name=mRNA_L-elsbetiae_contig6929.15700.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2094bp|location=Sequence derived from alignment at L-elsbetiae_contig6929:1216..3309+ (Laminarionema elsbetiae ELsaHSoW15)
TGCTGCTTGCTCACCTGCGGCACGAACGTCTCCCCAGAGGACAAAAGAAG
CTTTTGCGGCAAAGACTTGAACCAACTCACTGGGCCTTTCGACTGCCTGG
ACCCGGCCGCTGGTATTGGTAGGTCGCCGCGTTGGATAATTGCTTGAAGG
AGTGTGTGCATGATTGTAAAGTTTATAATGTCAGCGTGTGTTCTGAAGGG
TGCAAGGTTTAACACAATTGGTATTTCTTAGTTTAGCAATGAAATTAACA
CAAACCCGAATTGGCGACTTTGGCGGTTCCTCAACTGGCAGTCTCTAGCG
CATGCACATGGTTTTAAGCGATTGTTCATAATCAAGAGTGTTGTCGAAGA
CATGGAATGACTAATCACCACACAAACTGAAGCCTTGGGCGTAAAATGAT
GTGGCGTTGTGTGGATTTATTGTGCAATAAATACGCCGGCACACGATTAA
CTTATGCCGCAGATAGTTCGAGGCCGATGCATGCCGTTCCGATGCCTTTA
CTTCATTCACTTCCTTTCAACCAGCTTCCGGGTATCCATTGCTTTTGGCA
CCACTTACACGTCTACCTACGTGCGCCCGGCGGTTGCGACAGGGCATCTC
CAAACCCAACCCGAAGTCAAGAACTAACACACGTGTGAAATCGAGTCCGA
AACGCGAAAAATTGCATTTACAAACGAACGCAAGCAAGTGATGCACGATC
ACCAAACGGGTACAGGCTTGCTATCAGGACGCAGTGGTCATGGATGGGTG
AAACCAACGGATGATCAATAGACACTCGCAGGCGTGGAGTTGCGATGCTG
CACGACTCAAACCACCAAAACCGTCTTGATCCTTGAACCGACACGCACGC
CGCCCTGCTTACTCGCTTTAATGAACGTATGTGATTCATTTCGCGCACAG
TCTGCGAGGGCGCCGATGGAGATCCGACCACTACAAACAACGCGATCTGC
GATCCTGGTACGTTCGTTGCCTAAAGGGCGTTGTAGCAACGGGAGGCTTG
AGGTTGGGGTAACACGATAATATTTAACCTTTTTAGTTGCTCTGCATATT
CCAAGCAACTCATCATGTCTAGCAAGAGGCTCTTCCCCTATACAGGTAGA
GCATGATATCCTAAGCGTGCCTGGGGGGCAGTGTGAAGAGAAGCGCTTCT
GGTAGTTGATTGCCATGGCGTTGATCGTGTGTGTACTTTACTTCATTCAT
TCCATATGCTTCTTGGTGACTGGCCGGCACGAAACATCCACGAAATATCA
TGGATTCATCTGTTGGCTAGTTTTAGCATGCGTGAGATACCTCCGTAGTT
CTCCGATGGCGCGCCCAATGCCCGAACCCGGGCTCCTCCAAAACGGCTCA
AAGCTATCTCGTGAAGCTCCAGAACATCGGAACACTCACTTTCCGTCGCC
TTGCGGTGCTATGTTTTGACGCAGATAACAACATCGAAGAGTGTGCCTAC
GACGGTGGTGATGTGAGTATAAAATGTCAAATGTGACAGCATACTTACTT
GTAGATGCCTCATTTTCATGGAAGCAACCATTCCGTCTGACAGTAATATA
TTGCCACACGAAATATCAATATTCTTCGAGATGGTAAGGTTTCTGCCGAT
GCGAAGCCTTGGTGCAGCGATAATGTTGGTTGTCAAAGGAATCTAGTCAA
ATCAAGAAAGGAGATAGTTGTGGTGCAGACGGCAAAGGGCCCGAAGAATA
ACAGTGCAAGGGGCGACGGGTAAGAACCAATTACATATTCATGATGGTTG
TCCACAAAAAGAGGGTACCACAAAATGTCTGTCAGGAAGTAAGACTTTGA
ACCTCGACCGCACCAGAATACATCTAGTCTATCTACATAATAAATGTTCT
ACTTTGATATAGTCTAGTACGAGCAAACAATTCTACAAGTATTAGTCGGC
GGTCAGGGCTTGCGGCATCATGTATCATGGATCATGCGAGGGTTAATCGA
CGATCCCCGACTCTGGCCGAACCCATTTTGCCGCTCTCCTGCCAGTGCTG
CACGAGCAGCTGCGAAGATTCTGAAGACGGCATGGTCTGCGGAGCAGAAG
AAAATGGAGGTTTCGACTGCAAGGACCCGAATGAAGGTAGGTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6929:1216..3309+

>mRNA_L-elsbetiae_contig6929.15700.1 ID=mRNA_L-elsbetiae_contig6929.15700.1|Name=mRNA_L-elsbetiae_contig6929.15700.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=624bp|location=Sequence derived from alignment at L-elsbetiae_contig6929:1216..3309+ (Laminarionema elsbetiae ELsaHSoW15)
TGCTGCTTGCTCACCTGCGGCACGAACGTCTCCCCAGAGGACAAAAGAAG
CTTTTGCGGCAAAGACTTGAACCAACTCACTGGGCCTTTCGACTGCCTGG
ACCCGGCCGCTGGTATTGTGCTGCTTGCTCACCTGCGGCACGAACGTCTC
CCCAGAGGACAAAAGAAGCTTTTGCGGCAAAGACTTGAACCAACTCACTG
GGCCTTTCGACTGCCTGGACCCGGCCGCTGGTATTGTCTGCGAGGGCGCC
GATGGAGATCCGACCACTACAAACAACGCGATCTGCGATCCTGTCTGCGA
GGGCGCCGATGGAGATCCGACCACTACAAACAACGCGATCTGCGATCCTG
ATAACAACATCGAAGAGTGTGCCTACGACGGTGGTGATATAACAACATCG
AAGAGTGTGCCTACGACGGTGGTGATTGCTGCACGAGCAGCTGCGAAGAT
TCTGAAGACGGCATGGTCTGCGGAGCAGAAGAAAATGGAGGTTTCGACTG
CAAGGACCCGAATGAAGGTAGGTAATGCTGCACGAGCAGCTGCGAAGATT
CTGAAGACGGCATGGTCTGCGGAGCAGAAGAAAATGGAGGTTTCGACTGC
AAGGACCCGAATGAAGGTAGGTAA
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