prot_L-elsbetiae_contig6928.15699.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig6928.15699.1
Unique Nameprot_L-elsbetiae_contig6928.15699.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length469
Homology
BLAST of mRNA_L-elsbetiae_contig6928.15699.1 vs. uniprot
Match: D7G4M1_ECTSI (Smc-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4M1_ECTSI)

HSP 1 Score: 202 bits (515), Expect = 4.270e-53
Identity = 99/130 (76.15%), Postives = 110/130 (84.62%), Query Frame = 0
Query:  339 RKRKGKNEDDPWPGVVLKIEVSNFMCHRRFSIPLRKRVNFITGRNGSGKSAILAALQICLGAKAHLTHRAKKMADFIRHGWKGDAVVEVTVLNSIGGFKFDEYGDSITVRRTIRPNGSSGFELLGHDRKV 468
            +KRK K E  P  GVVLK+ VSNFMCHR+ S+PL K VNFI GRNGSGKSAILAALQICLGAKAHLTHRAKKMADFIRHGWKGDAV+EVT+LN+  GF F+EYG+SIT+RRTI+     GF LLGHDRKV
Sbjct:   72 KKRKRKTEQ-PEAGVVLKVHVSNFMCHRKLSVPLCKHVNFINGRNGSGKSAILAALQICLGAKAHLTHRAKKMADFIRHGWKGDAVLEVTLLNTEHGFMFEEYGESITIRRTIKQPSGGGFALLGHDRKV 200          
BLAST of mRNA_L-elsbetiae_contig6928.15699.1 vs. uniprot
Match: D7G4M2_ECTSI (Smc-like protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4M2_ECTSI)

HSP 1 Score: 186 bits (473), Expect = 1.540e-47
Identity = 88/117 (75.21%), Postives = 100/117 (85.47%), Query Frame = 0
Query:  352 GVVLKIEVSNFMCHRRFSIPLRKRVNFITGRNGSGKSAILAALQICLGAKAHLTHRAKKMADFIRHGWKGDAVVEVTVLNSIGGFKFDEYGDSITVRRTIRPNGSSGFELLGHDRKV 468
            GVVLKI VSNFMCHR+ ++PL K+VNFI GRNGSGKSAILAALQICLGAKAHLTHRAKKM DFIRHGWKGDAV+EVT+LN+  GF F+EYG+SIT+RRTI+     GF L+G D  V
Sbjct:  177 GVVLKINVSNFMCHRKLTVPLCKQVNFINGRNGSGKSAILAALQICLGAKAHLTHRAKKMTDFIRHGWKGDAVLEVTLLNTEHGFMFEEYGESITIRRTIKQPSGGGFALVGADGAV 293          
BLAST of mRNA_L-elsbetiae_contig6928.15699.1 vs. uniprot
Match: A0A836CML4_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CML4_9STRA)

HSP 1 Score: 156 bits (394), Expect = 3.160e-37
Identity = 74/117 (63.25%), Postives = 88/117 (75.21%), Query Frame = 0
Query:  352 GVVLKIEVSNFMCHRRFSIPLRKRVNFITGRNGSGKSAILAALQICLGAKAHLTHRAKKMADFIRHGWKGDAVVEVTVLNSIGGFKFDEYGDSITVRRTIRPNGSSGFELLGHDRKV 468
            GV+L+I+V NFMCHR  ++ L + +NFI G NGSGKSAILAALQICLGA+A +THRA K+ D IRHGW GDA VEV +LN+  G KFD YG SITVRR I+   S+  ELL HD  V
Sbjct:   75 GVILRIDVKNFMCHRHLTVDLCRNINFINGSNGSGKSAILAALQICLGARARVTHRAHKLEDLIRHGWGGDAEVEVKMLNTPDGHKFDVYGQSITVRRVIKRGASAVVELLSHDGTV 191          
BLAST of mRNA_L-elsbetiae_contig6928.15699.1 vs. uniprot
Match: A0A7S1FSU6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FSU6_9STRA)

HSP 1 Score: 130 bits (327), Expect = 1.110e-28
Identity = 62/118 (52.54%), Postives = 82/118 (69.49%), Query Frame = 0
Query:  352 GVVLKIEVSNFMCHRRFSIPLRKRVNFITGRNGSGKSAILAALQICLGAKAHLTHRAKKMADFIRHGWKGDAVVEVTVLN-SIGGFKFDEYGDSITVRRTIRPNGSSGFELLGHDRKV 468
            G++ ++ V NFMCH++ +I L + VNFI G+NGSGKSA+LAA+QICLGA A  THRA+ + D IR GW G +VV+V +LN     ++ D YGD +TV RTI  NGS G+ LL     V
Sbjct:  100 GIIHRVYVENFMCHKKMTIDLCRNVNFIHGQNGSGKSAVLAAVQICLGAGARRTHRARNLKDLIRKGWGGKSVVKVRLLNRGDDAYEHDLYGDYVTVERTIERNGSGGYRLLDEHEAV 217          
BLAST of mRNA_L-elsbetiae_contig6928.15699.1 vs. uniprot
Match: D0NBA3_PHYIT (Structural maintenance of chromosomes protein, putative n=3 Tax=Phytophthora infestans TaxID=4787 RepID=D0NBA3_PHYIT)

HSP 1 Score: 120 bits (302), Expect = 9.270e-28
Identity = 60/117 (51.28%), Postives = 75/117 (64.10%), Query Frame = 0
Query:  349 PWPGVVLKIEVSNFMCHRRFSIPLRKRVNFITGRNGSGKSAILAALQICLGAKAHLTHRAKKMADFIRHGWKGDAVVEVTVLNSIGG----FKFDEYGDSITVRRTIRPNGSSGFEL 461
            P  GV+ +I   NFMCHR+  + L   +NFITG NGSGKSAI+AA+QIC GA A  THR K +  FIRHG  G+A V VT+ N  G     F+ D+YG  I V R IR +GS+ + L
Sbjct:   74 PEMGVIEEIYCENFMCHRKLRVTLSPHINFITGENGSGKSAIIAAIQICFGASARTTHRGKNIKSFIRHGCDGNAFVRVTLRNDDGAGSDAFQADKYGKKIIVERLIRRDGSAEYRL 190          
BLAST of mRNA_L-elsbetiae_contig6928.15699.1 vs. uniprot
Match: W7U0X2_9STRA (Structural maintenance of chromosomes 6 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U0X2_9STRA)

HSP 1 Score: 124 bits (312), Expect = 1.160e-26
Identity = 63/113 (55.75%), Postives = 82/113 (72.57%), Query Frame = 0
Query:  352 GVVLKIEVSNFMCHRRFSIPLRKRVNFITGRNGSGKSAILAALQICLGAKAHLTHRAKKMADFIRHGWKGDAVVEVTVLNS-IGGFKFDEYGDSITVRRTIRPNGSS-GFELL 462
            GV++KI   NFMCHR+ SI L   VNFI G+NGSGKSAILAALQICLGA+A++THR  +++D IR G  G A+V V++LN     +++D+YGD ITV R I  + S  G+ LL
Sbjct:  148 GVIVKIYCENFMCHRKLSINLCPNVNFIHGQNGSGKSAILAALQICLGARANVTHRGARLSDMIRQGHDGHAIVRVSLLNKGPDAYEYDKYGDYITVERRIERHASGCGYRLL 260          
BLAST of mRNA_L-elsbetiae_contig6928.15699.1 vs. uniprot
Match: A0A1V9ZWG2_9STRA (Structural maintenance of chromosomes protein 6 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZWG2_9STRA)

HSP 1 Score: 122 bits (306), Expect = 6.420e-26
Identity = 61/120 (50.83%), Postives = 79/120 (65.83%), Query Frame = 0
Query:  352 GVVLKIEVSNFMCHRRFSIPLRKRVNFITGRNGSGKSAILAALQICLGAKAHLTHRAKKMADFIRHGWKGDAVVEVTVLNSIGG---FKFDEYGDSITVRRTIRPNGSSGFELLGHDRKV 468
            G++ +I   NFMCHRR SI L   +NFITG NGSGKSAI+AALQICLGA A  THR K + + IRHG  G+A+V +T+LN   G   F+ + +G  I V R IR +G++ + L     KV
Sbjct:   42 GIIQEIYCENFMCHRRMSIQLCPNINFITGENGSGKSAIIAALQICLGASARATHRGKSIKNLIRHGHDGNALVRITLLNDASGTDAFRPETFGRIIQVERLIRRDGTAEYRLKDEHGKV 161          
BLAST of mRNA_L-elsbetiae_contig6928.15699.1 vs. uniprot
Match: A0A2R5G690_9STRA (Structural maintenance of chromosomes protein 6 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G690_9STRA)

HSP 1 Score: 121 bits (304), Expect = 1.190e-25
Identity = 60/117 (51.28%), Postives = 78/117 (66.67%), Query Frame = 0
Query:  352 GVVLKIEVSNFMCHRRFSIPLRKRVNFITGRNGSGKSAILAALQICLGAKAHLTHRAKKMADFIRHGWKGDAVVEVTVLNS-IGGFKFDEYGDSITVRRTIRPNGSSGFELLGHDRK 467
            G V KIE +NFMCHRR  + L + +NFITG+NGSGKSAI+AALQICLG  A  T R  K+++ IRHG   DA+V V +LN     +K D YG  I + R ++P+G+S F +L    K
Sbjct:   90 GKVKKIECTNFMCHRRLEVNLGRHINFITGQNGSGKSAIVAALQICLGLSARNTKRGSKLSNLIRHGSNADAIVAVELLNEGPTAYKPDLYGPVIRIERVLKPSGTSSFRILNAKTK 206          
BLAST of mRNA_L-elsbetiae_contig6928.15699.1 vs. uniprot
Match: A0A6A3STL2_9STRA (AAA_23 domain-containing protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3STL2_9STRA)

HSP 1 Score: 118 bits (296), Expect = 2.590e-25
Identity = 59/115 (51.30%), Postives = 76/115 (66.09%), Query Frame = 0
Query:  352 GVVLKIEVSNFMCHRRFSIPLRKRVNFITGRNGSGKSAILAALQICLGAKAHLTHRAKKMADFIRHGWKGDAVVEVTVLNSIGG---FKFDEYGDSITVRRTIRPNGSSGFELLG 463
            GVV +I   NFMCHR+  + L   VNFITG NGSGKSAI+AALQ+C G+ AH THR K +   IRHG+ G+A+V VT+ N   G   F+ +++G  I V R IR +GS  + L G
Sbjct:   70 GVVEEIYCENFMCHRKLRVTLSPHVNFITGENGSGKSAIIAALQVCFGSSAHSTHRGKSLKSLIRHGFDGNALVRVTLRNDDVGSDAFRPEKFGRKIIVERVIRRDGSGEYCLRG 184          
BLAST of mRNA_L-elsbetiae_contig6928.15699.1 vs. uniprot
Match: A0A8K1CAM0_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CAM0_PYTOL)

HSP 1 Score: 120 bits (301), Expect = 2.820e-25
Identity = 55/113 (48.67%), Postives = 78/113 (69.03%), Query Frame = 0
Query:  352 GVVLKIEVSNFMCHRRFSIPLRKRVNFITGRNGSGKSAILAALQICLGAKAHLTHRAKKMADFIRHGWKGDAVVEVTVLNSIGG---FKFDEYGDSITVRRTIRPNGSSGFEL 461
            G++ +I   NFMCHR+  + L   +NFITG NGSGKSAI+AA+QICLGA A  THR K + + IRHG++G+A+V +T+ N   G   F+ +++G  I V R IR +GS+ + L
Sbjct:   74 GIIEEIYCENFMCHRKLRVQLSPHINFITGENGSGKSAIIAAIQICLGASARSTHRGKSIKNLIRHGYEGNALVRITLRNDASGSDAFRAEQFGKKILVERLIRRDGSAEYRL 186          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6928.15699.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G4M1_ECTSI4.270e-5376.15Smc-like protein n=1 Tax=Ectocarpus siliculosus Ta... [more]
D7G4M2_ECTSI1.540e-4775.21Smc-like protein n=2 Tax=Ectocarpus TaxID=2879 Rep... [more]
A0A836CML4_9STRA3.160e-3763.25P-loop containing nucleoside triphosphate hydrolas... [more]
A0A7S1FSU6_9STRA1.110e-2852.54Hypothetical protein (Fragment) n=1 Tax=Corethron ... [more]
D0NBA3_PHYIT9.270e-2851.28Structural maintenance of chromosomes protein, put... [more]
W7U0X2_9STRA1.160e-2655.75Structural maintenance of chromosomes 6 n=2 Tax=Mo... [more]
A0A1V9ZWG2_9STRA6.420e-2650.83Structural maintenance of chromosomes protein 6 n=... [more]
A0A2R5G690_9STRA1.190e-2551.28Structural maintenance of chromosomes protein 6 n=... [more]
A0A6A3STL2_9STRA2.590e-2551.30AAA_23 domain-containing protein n=2 Tax=Phytophth... [more]
A0A8K1CAM0_PYTOL2.820e-2548.67Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003395RecF/RecN/SMC, N-terminalPFAMPF02463SMC_Ncoord: 355..464
e-value: 2.5E-14
score: 53.2
NoneNo IPR availableGENE3D3.40.50.300coord: 354..467
e-value: 3.0E-23
score: 84.9
NoneNo IPR availablePANTHERPTHR19306STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 SMC5, SMC6coord: 336..463
IPR027132Structural maintenance of chromosomes protein 6PANTHERPTHR19306:SF6STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 6coord: 336..463
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 354..461

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6928contigL-elsbetiae_contig6928:1289..5274 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6928.15699.1mRNA_L-elsbetiae_contig6928.15699.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig6928 1289..5274 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig6928.15699.1 ID=prot_L-elsbetiae_contig6928.15699.1|Name=mRNA_L-elsbetiae_contig6928.15699.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=469bp
RNTERPRKAQRLSSGSVDEELSSGGSADGSVDGSLDGSPETDRESFSAAT
PALVETPPTPAATAAVAAATIAAAAASTYPAAAVAAPAPSPAASPATDDD
EMEEDDDDDDEVQPQAPKGKGKRAAIPGGDDSGPELQEEEEGEETDDDDD
VQVVGPPAPPAPIASHDEEEEEEQEEEGDSDVENVDPPALPVPLANHDQR
DQRDQHDQHHHEDRGDDDREDIRLAIADGVEGGSVEGEQEDPGEGDLNGA
VSNATATASNGDGEETEEEKEQEEGTAEAEGGAEEVVQGGESSEECRSSN
TDAQSGGEGSGAGGVSAVAAATEENQEISSGFSGGKSSRKRKGKNEDDPW
PGVVLKIEVSNFMCHRRFSIPLRKRVNFITGRNGSGKSAILAALQICLGA
KAHLTHRAKKMADFIRHGWKGDAVVEVTVLNSIGGFKFDEYGDSITVRRT
IRPNGSSGFELLGHDRKV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003395RecF/RecN/SMC_N
IPR027132SMC6
IPR027417P-loop_NTPase