mRNA_L-elsbetiae_contig692.15690.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig692.15690.1
Unique NamemRNA_L-elsbetiae_contig692.15690.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig692.15690.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig692contigL-elsbetiae_contig692:8441..9230 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size790
Cds size438
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig692.15690.1prot_L-elsbetiae_contig692.15690.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig692 8456..8893 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816767.4009478-UTR-L-elsbetiae_contig692:8440..84551622816767.4009478-UTR-L-elsbetiae_contig692:8440..8455Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig692 8441..8455 +
1691683797.9424021-UTR-L-elsbetiae_contig692:8440..84551691683797.9424021-UTR-L-elsbetiae_contig692:8440..8455Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig692 8441..8455 +
1622816767.4259436-UTR-L-elsbetiae_contig692:8893..92301622816767.4259436-UTR-L-elsbetiae_contig692:8893..9230Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig692 8894..9230 +
1691683797.9644873-UTR-L-elsbetiae_contig692:8893..92301691683797.9644873-UTR-L-elsbetiae_contig692:8893..9230Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig692 8894..9230 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816767.415149-CDS-L-elsbetiae_contig692:8455..88931622816767.415149-CDS-L-elsbetiae_contig692:8455..8893Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig692 8456..8893 +
1691683797.9535668-CDS-L-elsbetiae_contig692:8455..88931691683797.9535668-CDS-L-elsbetiae_contig692:8455..8893Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig692 8456..8893 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig692.15690.1

>prot_L-elsbetiae_contig692.15690.1 ID=prot_L-elsbetiae_contig692.15690.1|Name=mRNA_L-elsbetiae_contig692.15690.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=146bp
MSYGMTVIKTGCSTRSGGTMWLQGGPGTFWLDHGREHCHNHEQRATEVIN
LAGTRGVSLQTLILLKHATFPFILAVTKEHAVLVGEIKCTNQTATTPIVR
ILASTPSGREHLRQTEVNDGRYGGSQGRGGASLERPGPPQPTSTV*
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mRNA from alignment at L-elsbetiae_contig692:8441..9230+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig692.15690.1 ID=mRNA_L-elsbetiae_contig692.15690.1|Name=mRNA_L-elsbetiae_contig692.15690.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=790bp|location=Sequence derived from alignment at L-elsbetiae_contig692:8441..9230+ (Laminarionema elsbetiae ELsaHSoW15)
GTAAAATAAAATAAAATGTCATATGGCATGACCGTCATCAAAACGGGTTG
CTCGACAAGGAGTGGGGGGACGATGTGGCTTCAGGGCGGACCCGGCACGT
TTTGGCTTGACCACGGGAGAGAGCACTGCCACAACCACGAGCAGCGAGCG
ACAGAGGTGATTAATCTTGCTGGAACACGGGGCGTTTCCCTACAAACCTT
AATCTTGCTGAAACACGCGACGTTTCCCTTCATTCTCGCGGTGACAAAAG
AGCACGCCGTGTTGGTTGGAGAAATCAAATGCACAAACCAAACCGCAACC
ACACCCATTGTCCGCATTCTCGCTTCCACTCCAAGCGGGCGAGAGCACCT
CAGACAAACTGAAGTAAACGACGGCAGGTACGGTGGGAGCCAGGGCAGGG
GGGGCGCATCACTAGAGAGGCCCGGCCCGCCACAACCGACTTCGACCGTC
TGAAGCCTTCCGACCACTACATAAAACCGTTCCCCGCACACTTTCCTTTG
GTGCGCAAAAAGACACCCCCTGAGGCGCACCACAATATATACTGTACCGA
CTCCGCAACACACAAGAACACAAATACCACCCACAGGACAAACGATTCTT
GATGGCCACCAAGAGAGCACAACCGTCCTCAAAACAGCCAAAAACAAACA
CACACACACACACCCCCTCCTATGTGACCCCGGTTGGGTCGTATGGCTAG
AGAAGAAGTGGAGGATGGGGGCCAGAGGGGCAGACGACAAAATCCAATAA
TGGGCAGACAAAATCCAAAAAAAAAAAAAAAAAAAACACA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig692:8441..9230+

>mRNA_L-elsbetiae_contig692.15690.1 ID=mRNA_L-elsbetiae_contig692.15690.1|Name=mRNA_L-elsbetiae_contig692.15690.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=876bp|location=Sequence derived from alignment at L-elsbetiae_contig692:8441..9230+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCATATGGCATGACCGTCATCAAAACGGGTTGCTCGACAAGGAGTGG
GGGGACGATGTGGCTTCAGGGCGGACCCGGCACGTTTTGGCTTGACCACG
GGAGAGAGCACTGCCACAACCACGAGCAGCGAGCGACAGAGGTGATTAAT
CTTGCTGGAACACGGGGCGTTTCCCTACAAACCTTAATCTTGCTGAAACA
CGCGACGTTTCCCTTCATTCTCGCGGTGACAAAAGAGCACGCCGTGTTGG
TTGGAGAAATCAAATGCACAAACCAAACCGCAACCACACCCATTGTCCGC
ATTCTCGCTTCCACTCCAAGCGGGCGAGAGCACCTCAGACAAACTGAAGT
AAACGACGGCAGGTACGGTGGGAGCCAGGGCAGGGGGGGCGCATCACTAG
AGAGGCCCGGCCCGCCACAACCGACTTCGACCGTCTGAATGTCATATGGC
ATGACCGTCATCAAAACGGGTTGCTCGACAAGGAGTGGGGGGACGATGTG
GCTTCAGGGCGGACCCGGCACGTTTTGGCTTGACCACGGGAGAGAGCACT
GCCACAACCACGAGCAGCGAGCGACAGAGGTGATTAATCTTGCTGGAACA
CGGGGCGTTTCCCTACAAACCTTAATCTTGCTGAAACACGCGACGTTTCC
CTTCATTCTCGCGGTGACAAAAGAGCACGCCGTGTTGGTTGGAGAAATCA
AATGCACAAACCAAACCGCAACCACACCCATTGTCCGCATTCTCGCTTCC
ACTCCAAGCGGGCGAGAGCACCTCAGACAAACTGAAGTAAACGACGGCAG
GTACGGTGGGAGCCAGGGCAGGGGGGGCGCATCACTAGAGAGGCCCGGCC
CGCCACAACCGACTTCGACCGTCTGA
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