mRNA_L-elsbetiae_contig6913.15683.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6913.15683.1
Unique NamemRNA_L-elsbetiae_contig6913.15683.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6913.15683.1 vs. uniprot
Match: D8LS28_ECTSI (PX domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LS28_ECTSI)

HSP 1 Score: 213 bits (543), Expect = 2.070e-59
Identity = 121/181 (66.85%), Postives = 140/181 (77.35%), Query Frame = 1 
Query:    1 RAVELLLAAFERLGVSVEWLREVLMDEGGVVDGGRRAGGVLKRFRSPRRGVAAVPKPRQE-ERKARVCLEGASLSLCDIRIVDGKFACYRITVTPAT-----GAQWEVWRRMADTIKLKAALSKVASAEVELPQLPHSYRKSFDASRLTRRRRSIQHFLQVVLKQEALRGCDALVDFLSPE 525
            RA ELLLAA ERLG+ VEW R V+ D GG     R  GGVL+RFRS +R   A+P  +Q  + + RV LEGASLSL D+R+VD KFACY+ITV  +T     GA+WEVWRRMAD IKLKAALSKV++A+VELP LPHSYR+SFDASRL RRRRSIQHFLQV +KQ ALR  DAL+DFLSPE
Sbjct:   52 RAFELLLAALERLGIPVEWTRGVV-DGGGTAGENRGRGGVLRRFRSRKR--CALPSKQQPGQERVRVSLEGASLSLNDVRVVDSKFACYKITVATSTTGASAGARWEVWRRMADLIKLKAALSKVSAADVELPPLPHSYRRSFDASRLARRRRSIQHFLQVAVKQPALRDSDALLDFLSPE 229
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6913.15683.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LS28_ECTSI2.070e-5966.85PX domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6913contigL-elsbetiae_contig6913:6976..9853 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size914
Cds size735
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816766.7973595-UTR-L-elsbetiae_contig6913:6975..71011622816766.7973595-UTR-L-elsbetiae_contig6913:6975..7101Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6913 6976..7101 -
1691683797.5236545-UTR-L-elsbetiae_contig6913:6975..71011691683797.5236545-UTR-L-elsbetiae_contig6913:6975..7101Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6913 6976..7101 -
1622816766.8763666-UTR-L-elsbetiae_contig6913:9800..98531622816766.8763666-UTR-L-elsbetiae_contig6913:9800..9853Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6913 9801..9853 -
1691683797.5881293-UTR-L-elsbetiae_contig6913:9800..98531691683797.5881293-UTR-L-elsbetiae_contig6913:9800..9853Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6913 9801..9853 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816766.8145525-CDS-L-elsbetiae_contig6913:7101..73631622816766.8145525-CDS-L-elsbetiae_contig6913:7101..7363Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6913 7102..7363 -
1691683797.5384734-CDS-L-elsbetiae_contig6913:7101..73631691683797.5384734-CDS-L-elsbetiae_contig6913:7101..7363Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6913 7102..7363 -
1622816766.8297746-CDS-L-elsbetiae_contig6913:7888..80441622816766.8297746-CDS-L-elsbetiae_contig6913:7888..8044Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6913 7889..8044 -
1691683797.549019-CDS-L-elsbetiae_contig6913:7888..80441691683797.549019-CDS-L-elsbetiae_contig6913:7888..8044Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6913 7889..8044 -
1622816766.8423364-CDS-L-elsbetiae_contig6913:8581..86481622816766.8423364-CDS-L-elsbetiae_contig6913:8581..8648Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6913 8582..8648 -
1691683797.559483-CDS-L-elsbetiae_contig6913:8581..86481691683797.559483-CDS-L-elsbetiae_contig6913:8581..8648Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6913 8582..8648 -
1622816766.8556647-CDS-L-elsbetiae_contig6913:9166..92801622816766.8556647-CDS-L-elsbetiae_contig6913:9166..9280Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6913 9167..9280 -
1691683797.568897-CDS-L-elsbetiae_contig6913:9166..92801691683797.568897-CDS-L-elsbetiae_contig6913:9166..9280Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6913 9167..9280 -
1622816766.8659482-CDS-L-elsbetiae_contig6913:9664..98001622816766.8659482-CDS-L-elsbetiae_contig6913:9664..9800Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6913 9665..9800 -
1691683797.578095-CDS-L-elsbetiae_contig6913:9664..98001691683797.578095-CDS-L-elsbetiae_contig6913:9664..9800Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6913 9665..9800 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6913.15683.1prot_L-elsbetiae_contig6913.15683.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6913 7102..9800 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6913.15683.1

>prot_L-elsbetiae_contig6913.15683.1 ID=prot_L-elsbetiae_contig6913.15683.1|Name=mRNA_L-elsbetiae_contig6913.15683.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=245bp
MAEGGLDGRGRRCGRWQAGGRSAEEVPIASARGSGCSQAAARRAEGAGVL
GRSQPIPLRHSYRGRQVCMLQDNCHASHGRTVGGLEKDGGHDQAESGLEQ
GGFSRGGTPPVASLLPQELRRQPSHQAAKEHPALLAGGAEAGSPQRLRRA
GRLPLPRSCRCCFCAPRELRRRKLACSRCQRYSQRRHRLQQQQQQQWRRV
RHHTDSLAPPVSQRGSSSSSSNGSSSSSSGWRQRGRGHRQAVDG*
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mRNA from alignment at L-elsbetiae_contig6913:6976..9853-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6913.15683.1 ID=mRNA_L-elsbetiae_contig6913.15683.1|Name=mRNA_L-elsbetiae_contig6913.15683.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2878bp|location=Sequence derived from alignment at L-elsbetiae_contig6913:6976..9853- (Laminarionema elsbetiae ELsaHSoW15)
AGGGCGGTTGAGCTCCTGCTGGCGGCGTTCGAGAGGCTGGGGGTCTCTGT
AGAATGGCTGAGGGAGGTCTTGATGGACGAGGGAGGCGTTGTGGACGGTG
GCAGGCGGGCGGGAGGAGTGCTGAAGAGGTTCCGATCGCCTCGGCGAGGG
GTAGCGGCTGTTCCCAAGCCGCGGCAAGAAGAGCGGAAGGTGATAAACAG
AAAGTCTGTTGTTGCCGCTGCAGCTACAGCTGCTGCTCTATTATCGTTCG
TTCTAGCCGCCCTTGTTACTGTTGCTGCTATATTGCGTCGCCGGTGTTGC
TTCTGCTGCCTCAGATATCCACTCCTCTATGTTTTTTGGCGAAGAATTTA
AGTCTGCTTCCCCCTCCTTCCCCTTCACCTTCCCGTCAGTTGTGTGTGTT
TTCAGCAGCAGCGTTGCCAGCAGGCACGCACCGTGCGATATATCGATATA
TTGATACTCCGAACCCTGACTTGCTGCACCTTCGATGTTATGTTTTTATA
TAGCAAGTCAGCTGTGCCGAACACACCCAAGCGCCCCCCCCCCCTCTCTC
TCCACGCCAATGTTGTGCGGCAGGCGCGGGTGTGCTTGGAAGGAGCCAGC
CTATCCCTTTGCGACATTCGTATCGTGGACGGCAAGTTTGCATGCTACAG
GATAACTGTCACGCCAGCCACGGGCGCACAGTGGGAGGTGCGTCTGGGAT
CGGCTGGGCTGGGCGAAATGGTGCAGAGCGCGGCGAAGCCGGACATATGT
CGGCGATGCGTCAACGTCATTTTATGTTACGCCTGCTGCTAGTTTCCTTA
CCTCTGCTGCTGTCTGCTGGCTGTAGTTCTCTTGCGTTGTTTGTGTGGCA
AAGTGGTTGATTTTGTGTCAGAGCCGGAGCTAAGAGGTGGTGTGACGGCT
CTGCTTCCTGCTGGAGAGGCTACGGCAGTGGGCCTACACATAACGCCTCT
TCATATGCCTCGTGGCGTGGTACGGCCAGTGCCGGATCTCACCGGCGTCG
CAAAATACTGCACAAGTTGACAGCAATTTTGTTTTTGTCTACCTTGTACG
TTGCTTACGACGTGGCACTACTGCCACCGCTTGACAAACATCGAGCTCGA
TTGGCTACATGACGCCACACCGCCGTGACTCGGCAGCCACGCCTTCGCGC
CGACACCGTTGTTTTGACATGGCACACCGCATGCTGCTGCTGCTGCCGCG
GGCAGGTCTGGAGAAGGATGGCGGACACGATCAAGCTGAAAGCGGCCTTG
AGCAAGGTGGCTTCAGCAGAGGGTGAGGAAGAGGAAGAGGAGGCCGCACG
CGCAAGAGTCAACAGATGACGCGCAAGTGCCTTGTTATTATCTCGTTGAA
AGGTATACAGCAATATTCCCCACGGAAGGGCGTCCATGGAAGGCAGCAAC
AGGCTGCGGAGAGGAAAATACAGCCCCAAAGCAGCGACGTATGCCTGTGG
CGCCTTGGATGTACGCTGTGAGGGCATGGGGGCAGCATTCAGCCCGATTT
TTTTGGCTGACAGGCATCGCCATCCGCCTCGTTCAAAATATCCTTTGCTG
CTCTTGCTTGGAGGTCGAATGCTTTTTTTACGAGGCCTGCCTTTACTGCG
GCTGCCCTGTTGTGATCCCCAAAACCTCTCCTCGATCCGCGTGCTGCCTC
CGTCGGTGGGTGGTTCCGTGATGCCAAACCCCGCCAAGTGACCCCCCCAC
CACCCCCGCCCACACCCCTCGCCCTACTGCTTGACTAATCGTTGCGCCGT
TTGACGTCCGACGCTGGTTGGTTTTGTGTTTCCATGGTGGTGGTGGGGTG
AAATCGCAGTGGAACTCCCCCAGTTGCCTCACTCTTACCGCAAGAGCTTC
GACGCCAGCCGTCTCACCAGGCGGCGAAGGAGCATCCAGCACTTCTTGCA
GGTGGTGCTGAAGCAGGAAGCCCTCAGAGGCTGCGACGCGCTGGTCGACT
TCCTCTCCCCCGAAGGTGTGTTCGACGCCAGCGAGGAGTAGGGTGTTGCC
CTTGTCGTTGTTGCTCCGAGTGACGGTGGTTGGTGACTGCTTGTGCCGGC
ATGGCCGGCTTTCCCCTCCCTTCCACGTGTGTACCGCCAGGACGTACAGA
ATAGCTGCGGCTGTGCGATACCACGGCAGCAATTTCCACCCACCCCGGCA
AGCACAACAGGCTCATCCGCGGGGACATCGGCAAGGATTGGGCCTGTGGT
CTCATCCGCCCCTTCCATTCATTGTGCGCCAATCCTGCGACCAACAGCGG
TGTCCCGTCCCGCATGCCGATCCCCTCCACCCGATGCACCTCACACCAGT
ATCTACCCTCTCTTGACGATGTTGCCCTTTTCACCTTTTTAAATCCATGT
ACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGTATCCCCC
CCCTCTCTCCGCTTTTCCCCTTTTCCCCTTTTTAACCCCCCTCCCCCCCC
CCCCCCCCCCCCATCCCTGCCCCCCTCGCCGCTCATGCAGTTGCAGGTGC
TGTTTCTGCGCGCCCCGGGAGCTTCGTCGGCGTAAGCTCGCCTGCTCCCG
CTGCCAGCGTTACTCTCAACGGCGGCATCGGCTGCAGCAGCAGCAGCAAC
AACAGTGGCGGCGGGTACGACACCACACCGACTCGCTTGCACCTCCGGTC
TCGCAGCGAGGCAGCAGCAGCAGTAGCAGCAACGGCAGCAGCAGCAGCAG
CAGCGGGTGGCGGCAGCGGGGGCGGGGGCATCGGCAGGCGGTTGACGGGT
AGCGGCGCAGGAGAACGGCCGTCACGCGTCCGCTCTTGCGATCACCCGCC
GCCCAAGCGCTTGTCGCAAGAGGAGGACCGGGAGGAAGAGGATGACGACG
ACCCCTCGGCGAGTAGCGACGACGAAGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6913:6976..9853-

>mRNA_L-elsbetiae_contig6913.15683.1 ID=mRNA_L-elsbetiae_contig6913.15683.1|Name=mRNA_L-elsbetiae_contig6913.15683.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1470bp|location=Sequence derived from alignment at L-elsbetiae_contig6913:6976..9853- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCTGAGGGAGGTCTTGATGGACGAGGGAGGCGTTGTGGACGGTGGCA
GGCGGGCGGGAGGAGTGCTGAAGAGGTTCCGATCGCCTCGGCGAGGGGTA
GCGGCTGTTCCCAAGCCGCGGCAAGAAGAGCGGAAGATGGCTGAGGGAGG
TCTTGATGGACGAGGGAGGCGTTGTGGACGGTGGCAGGCGGGCGGGAGGA
GTGCTGAAGAGGTTCCGATCGCCTCGGCGAGGGGTAGCGGCTGTTCCCAA
GCCGCGGCAAGAAGAGCGGAAGGCGCGGGTGTGCTTGGAAGGAGCCAGCC
TATCCCTTTGCGACATTCGTATCGTGGACGGCAAGTTTGCATGCTACAGG
ATAACTGTCACGCCAGCCACGGGCGCACAGTGGGAGGCGCGGGTGTGCTT
GGAAGGAGCCAGCCTATCCCTTTGCGACATTCGTATCGTGGACGGCAAGT
TTGCATGCTACAGGATAACTGTCACGCCAGCCACGGGCGCACAGTGGGAG
GTCTGGAGAAGGATGGCGGACACGATCAAGCTGAAAGCGGCCTTGAGCAA
GGTGGCTTCAGCAGAGGGTCTGGAGAAGGATGGCGGACACGATCAAGCTG
AAAGCGGCCTTGAGCAAGGTGGCTTCAGCAGAGGTGGAACTCCCCCAGTT
GCCTCACTCTTACCGCAAGAGCTTCGACGCCAGCCGTCTCACCAGGCGGC
GAAGGAGCATCCAGCACTTCTTGCAGGTGGTGCTGAAGCAGGAAGCCCTC
AGAGGCTGCGACGCGCTGGTCGACTTCCTCTCCCCCGAAGTGGAACTCCC
CCAGTTGCCTCACTCTTACCGCAAGAGCTTCGACGCCAGCCGTCTCACCA
GGCGGCGAAGGAGCATCCAGCACTTCTTGCAGGTGGTGCTGAAGCAGGAA
GCCCTCAGAGGCTGCGACGCGCTGGTCGACTTCCTCTCCCCCGAAGTTGC
AGGTGCTGTTTCTGCGCGCCCCGGGAGCTTCGTCGGCGTAAGCTCGCCTG
CTCCCGCTGCCAGCGTTACTCTCAACGGCGGCATCGGCTGCAGCAGCAGC
AGCAACAACAGTGGCGGCGGGTACGACACCACACCGACTCGCTTGCACCT
CCGGTCTCGCAGCGAGGCAGCAGCAGCAGTAGCAGCAACGGCAGCAGCAG
CAGCAGCAGCGGGTGGCGGCAGCGGGGGCGGGGGCATCGGCAGGCGGTTG
ACGGGTAGTTGCAGGTGCTGTTTCTGCGCGCCCCGGGAGCTTCGTCGGCG
TAAGCTCGCCTGCTCCCGCTGCCAGCGTTACTCTCAACGGCGGCATCGGC
TGCAGCAGCAGCAGCAACAACAGTGGCGGCGGGTACGACACCACACCGAC
TCGCTTGCACCTCCGGTCTCGCAGCGAGGCAGCAGCAGCAGTAGCAGCAA
CGGCAGCAGCAGCAGCAGCAGCGGGTGGCGGCAGCGGGGGCGGGGGCATC
GGCAGGCGGTTGACGGGTAG
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