mRNA_L-elsbetiae_contig6909.15679.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6909.15679.1
Unique NamemRNA_L-elsbetiae_contig6909.15679.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6909.15679.1 vs. uniprot
Match: A0A6H5L4C8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4C8_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 1.040e-12
Identity = 46/83 (55.42%), Postives = 50/83 (60.24%), Query Frame = 1 
Query:   61 LRGYILSSKPACGGGSSTSIAPAQLTWRAVAARK----AKLATSVRFGGVGDIQANLVRAEKSQLVERDREGASLLMHAAQRG 297
            L G  L S P   G      +P      A A  +    AKL TSVRFGGVGDI+ANL RA+K QLV RD EG SLLMHAAQRG
Sbjct:  483 LGGVQLLSSPGGTGALDAFCSPLSEATAAAAGSEMTHAAKLKTSVRFGGVGDIRANLGRADKQQLVSRDGEGVSLLMHAAQRG 565
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BLAST of mRNA_L-elsbetiae_contig6909.15679.1 vs. uniprot
Match: D7FHF4_ECTSI (Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHF4_ECTSI)

HSP 1 Score: 70.5 bits (171), Expect = 4.900e-12
Identity = 37/45 (82.22%), Postives = 39/45 (86.67%), Query Frame = 1 
Query:  163 AKLATSVRFGGVGDIQANLVRAEKSQLVERDREGASLLMHAAQRG 297
            AKL TSVRFGGVGDI+ANL RA+K QLV RD EG SLLMHAAQRG
Sbjct:  287 AKLKTSVRFGGVGDIRANLGRADKPQLVSRDGEGVSLLMHAAQRG 331
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6909.15679.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L4C8_9PHAE1.040e-1255.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FHF4_ECTSI4.900e-1282.22Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6909contigL-elsbetiae_contig6909:818..1316 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-25_002600.1
Exons2
Model size300
Cds size297
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816765.9067907-CDS-L-elsbetiae_contig6909:818..9521622816765.9067907-CDS-L-elsbetiae_contig6909:818..952Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6909 819..952 -
1691683796.835222-CDS-L-elsbetiae_contig6909:818..9521691683796.835222-CDS-L-elsbetiae_contig6909:818..952Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6909 819..952 -
1622816765.9193485-CDS-L-elsbetiae_contig6909:1153..13161622816765.9193485-CDS-L-elsbetiae_contig6909:1153..1316Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6909 1154..1316 -
1691683796.8461359-CDS-L-elsbetiae_contig6909:1153..13161691683796.8461359-CDS-L-elsbetiae_contig6909:1153..1316Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6909 1154..1316 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6909.15679.1prot_L-elsbetiae_contig6909.15679.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6909 819..1316 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6909.15679.1

>prot_L-elsbetiae_contig6909.15679.1 ID=prot_L-elsbetiae_contig6909.15679.1|Name=mRNA_L-elsbetiae_contig6909.15679.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=99bp
RPETSHRHHKQKHHNCTSRFLRGYILSSKPACGGGSSTSIAPAQLTWRAV
AARKAKLATSVRFGGVGDIQANLVRAEKSQLVERDREGASLLMHAAQRG
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mRNA from alignment at L-elsbetiae_contig6909:818..1316-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6909.15679.1 ID=mRNA_L-elsbetiae_contig6909.15679.1|Name=mRNA_L-elsbetiae_contig6909.15679.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=499bp|location=Sequence derived from alignment at L-elsbetiae_contig6909:818..1316- (Laminarionema elsbetiae ELsaHSoW15)
CGCCCTGAGACAAGCCACCGCCACCACAAGCAGAAGCATCACAACTGCAC
CTCTCGTTTCCTTCGTGGGTACATTTTAAGCTCAAAACCCGCGTGCGGCG
GCGGCAGTAGCACAAGCATCGCACCTGCACAGCTGACATGGCGCGCAGTG
GCAGCAAGGAAAGGTGGGCCGCATACTTGACTGAGATACGGACATAAAGA
TTGTCTTAGACGGACTCAGGATCATTGTTTGTCTGATCCGAACCGCAGCA
CTACTAGACTATATGTACATAATCTACATATGTCTACAGTACATGCCCTG
TGTACCCTGCCTGCCTCGCCTTGCCGCCTTTCACCTTGCCTTACCGCCGC
GGTTGGCCGAGCAGCCAAGCTGGCGACGTCTGTGAGGTTCGGGGGCGTGG
GCGATATCCAGGCAAACCTCGTCAGGGCCGAAAAGTCGCAGCTGGTGGAG
AGGGACAGGGAAGGGGCGTCCCTGCTGATGCACGCCGCGCAGCGCGGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6909:818..1316-

>mRNA_L-elsbetiae_contig6909.15679.1 ID=mRNA_L-elsbetiae_contig6909.15679.1|Name=mRNA_L-elsbetiae_contig6909.15679.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=594bp|location=Sequence derived from alignment at L-elsbetiae_contig6909:818..1316- (Laminarionema elsbetiae ELsaHSoW15)
CGCCCTGAGACAAGCCACCGCCACCACAAGCAGAAGCATCACAACTGCAC
CTCTCGTTTCCTTCGTGGGTACATTTTAAGCTCAAAACCCGCGTGCGGCG
GCGGCAGTAGCACAAGCATCGCACCTGCACAGCTGACATGGCGCGCAGTG
GCAGCAAGGAAAGCGCCCTGAGACAAGCCACCGCCACCACAAGCAGAAGC
ATCACAACTGCACCTCTCGTTTCCTTCGTGGGTACATTTTAAGCTCAAAA
CCCGCGTGCGGCGGCGGCAGTAGCACAAGCATCGCACCTGCACAGCTGAC
ATGGCGCGCAGTGGCAGCAAGGAAAGCCAAGCTGGCGACGTCTGTGAGGT
TCGGGGGCGTGGGCGATATCCAGGCAAACCTCGTCAGGGCCGAAAAGTCG
CAGCTGGTGGAGAGGGACAGGGAAGGGGCGTCCCTGCTGATGCACGCCGC
GCAGCGCGGGCCAAGCTGGCGACGTCTGTGAGGTTCGGGGGCGTGGGCGA
TATCCAGGCAAACCTCGTCAGGGCCGAAAAGTCGCAGCTGGTGGAGAGGG
ACAGGGAAGGGGCGTCCCTGCTGATGCACGCCGCGCAGCGCGGG
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