mRNA_L-elsbetiae_contig6906.15676.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6906.15676.1
Unique NamemRNA_L-elsbetiae_contig6906.15676.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6906.15676.1 vs. uniprot
Match: D8LSN8_ECTSI (WD-40 repeat family protein / mitotic checkpoint protein, putative n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSN8_ECTSI)

HSP 1 Score: 97.8 bits (242), Expect = 1.810e-23
Identity = 44/49 (89.80%), Postives = 49/49 (100.00%), Query Frame = 1 
Query:    1 MVNIWDGKNKKRLWQSNAYSTGIASLAFNHDGTRLAIAASYTFEQGAIA 147
            MVNIWDGKNKKRLWQS+AY+TGI+SL+FNHDGTRLAIA+SYTFEQGAIA
Sbjct:  220 MVNIWDGKNKKRLWQSSAYNTGISSLSFNHDGTRLAIASSYTFEQGAIA 268
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BLAST of mRNA_L-elsbetiae_contig6906.15676.1 vs. uniprot
Match: A0A7S2UWG3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UWG3_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 3.060e-15
Identity = 35/48 (72.92%), Postives = 40/48 (83.33%), Query Frame = 1 
Query:    1 MVNIWDGKNKKRLWQSNAYSTGIASLAFNHDGTRLAIAASYTFEQGAI 144
            +VN+WDG+NKKRL Q   Y TGI+SLAFNHDG+ LAIA SYTFEQG I
Sbjct:  234 IVNVWDGQNKKRLSQFPKYQTGISSLAFNHDGSLLAIAVSYTFEQGEI 281
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BLAST of mRNA_L-elsbetiae_contig6906.15676.1 vs. uniprot
Match: A0A7S2BKC8_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BKC8_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 8.560e-15
Identity = 34/45 (75.56%), Postives = 39/45 (86.67%), Query Frame = 1 
Query:    4 VNIWDGKNKKRLWQSNAYSTGIASLAFNHDGTRLAIAASYTFEQG 138
            VNIWDGKNKKRL Q  ++ T IASL+FNHDGT LA+AASYTFE+G
Sbjct:  240 VNIWDGKNKKRLCQLPSFPTSIASLSFNHDGTMLAVAASYTFEEG 284
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BLAST of mRNA_L-elsbetiae_contig6906.15676.1 vs. uniprot
Match: A0A7S3CBB0_9CHLO (Hypothetical protein n=1 Tax=Chloropicon roscoffensis TaxID=1461544 RepID=A0A7S3CBB0_9CHLO)

HSP 1 Score: 71.6 bits (174), Expect = 1.330e-14
Identity = 31/46 (67.39%), Postives = 39/46 (84.78%), Query Frame = 1 
Query:    1 MVNIWDGKNKKRLWQSNAYSTGIASLAFNHDGTRLAIAASYTFEQG 138
            +VN WDG+NKKRL+Q + Y T IA+L+FN  GT+LA+AASYTFEQG
Sbjct:   71 VVNTWDGENKKRLYQYSKYQTSIAALSFNQQGTKLAVAASYTFEQG 116
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BLAST of mRNA_L-elsbetiae_contig6906.15676.1 vs. uniprot
Match: A0A8J5FVB2_ZINOF (Uncharacterized protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5FVB2_ZINOF)

HSP 1 Score: 69.7 bits (169), Expect = 1.280e-13
Identity = 30/47 (63.83%), Postives = 38/47 (80.85%), Query Frame = 1 
Query:    4 VNIWDGKNKKRLWQSNAYSTGIASLAFNHDGTRLAIAASYTFEQGAI 144
            VN+WDG NKKRL+Q + Y T IA+L+FN DG  LA+A+SYTFE+G I
Sbjct:   92 VNVWDGNNKKRLYQYSKYPTSIAALSFNRDGRLLAVASSYTFEEGEI 138
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BLAST of mRNA_L-elsbetiae_contig6906.15676.1 vs. uniprot
Match: F2ULS7_SALR5 (Mitotic checkpoint protein BUB3 n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2ULS7_SALR5)

HSP 1 Score: 71.2 bits (173), Expect = 2.410e-13
Identity = 30/46 (65.22%), Postives = 40/46 (86.96%), Query Frame = 1 
Query:    1 MVNIWDGKNKKRLWQSNAYSTGIASLAFNHDGTRLAIAASYTFEQG 138
            +VN+WDG N+KR++Q + Y T IASL+FNHDG+ LAIAASYT+E+G
Sbjct:  253 LVNVWDGVNRKRVYQFHEYPTSIASLSFNHDGSLLAIAASYTYEEG 298
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BLAST of mRNA_L-elsbetiae_contig6906.15676.1 vs. uniprot
Match: A0A7S2HTA8_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HTA8_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 3.330e-13
Identity = 31/45 (68.89%), Postives = 38/45 (84.44%), Query Frame = 1 
Query:    4 VNIWDGKNKKRLWQSNAYSTGIASLAFNHDGTRLAIAASYTFEQG 138
            VN+WDG+NKKRL Q  +Y T IASL+FN DGT LA+A+SYTFE+G
Sbjct:  254 VNVWDGRNKKRLCQLPSYPTSIASLSFNRDGTMLAVASSYTFEEG 298
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BLAST of mRNA_L-elsbetiae_contig6906.15676.1 vs. uniprot
Match: B5M785_AMBAM (Spleen mitotic checkpoint BUB3 isoform 1-like protein (Fragment) n=2 Tax=Amblyomma americanum TaxID=6943 RepID=B5M785_AMBAM)

HSP 1 Score: 66.6 bits (161), Expect = 1.030e-12
Identity = 31/47 (65.96%), Postives = 37/47 (78.72%), Query Frame = 1 
Query:    4 VNIWDGKNKKRLWQSNAYSTGIASLAFNHDGTRLAIAASYTFEQGAI 144
            VNIWDG NKKRL Q + Y + IASLAF+HDG+ LAI +SY +EQG I
Sbjct:   68 VNIWDGFNKKRLCQFHKYPSSIASLAFSHDGSLLAIGSSYLYEQGEI 114
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BLAST of mRNA_L-elsbetiae_contig6906.15676.1 vs. uniprot
Match: A0A1V9YSG2_9STRA (Mitotic checkpoint protein BUB3-like n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YSG2_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 1.660e-12
Identity = 28/46 (60.87%), Postives = 40/46 (86.96%), Query Frame = 1 
Query:    1 MVNIWDGKNKKRLWQSNAYSTGIASLAFNHDGTRLAIAASYTFEQG 138
            +VN+WDG+NKKRL Q   +S+ IAS+ FNHDG+++A+A+SYTFE+G
Sbjct:  250 VVNVWDGENKKRLCQLAKFSSSIASMDFNHDGSKIAVASSYTFEEG 295
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BLAST of mRNA_L-elsbetiae_contig6906.15676.1 vs. uniprot
Match: A0A4V4H9N6_MUSBA (Uncharacterized protein n=1 Tax=Musa balbisiana TaxID=52838 RepID=A0A4V4H9N6_MUSBA)

HSP 1 Score: 67.4 bits (163), Expect = 1.720e-12
Identity = 28/45 (62.22%), Postives = 38/45 (84.44%), Query Frame = 1 
Query:    4 VNIWDGKNKKRLWQSNAYSTGIASLAFNHDGTRLAIAASYTFEQG 138
            VN+WDG NKKRL+Q + Y T IA+L+F+ DG +LA+A+SYTFE+G
Sbjct:  142 VNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRQLAVASSYTFEEG 186
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6906.15676.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LSN8_ECTSI1.810e-2389.80WD-40 repeat family protein / mitotic checkpoint p... [more]
A0A7S2UWG3_9STRA3.060e-1572.92Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2BKC8_9STRA8.560e-1575.56Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S3CBB0_9CHLO1.330e-1467.39Hypothetical protein n=1 Tax=Chloropicon roscoffen... [more]
A0A8J5FVB2_ZINOF1.280e-1363.83Uncharacterized protein n=1 Tax=Zingiber officinal... [more]
F2ULS7_SALR52.410e-1365.22Mitotic checkpoint protein BUB3 n=1 Tax=Salpingoec... [more]
A0A7S2HTA8_9STRA3.330e-1368.89Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
B5M785_AMBAM1.030e-1265.96Spleen mitotic checkpoint BUB3 isoform 1-like prot... [more]
A0A1V9YSG2_9STRA1.660e-1260.87Mitotic checkpoint protein BUB3-like n=1 Tax=Thrau... [more]
A0A4V4H9N6_MUSBA1.720e-1262.22Uncharacterized protein n=1 Tax=Musa balbisiana Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6906contigL-elsbetiae_contig6906:125..274 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score97.8
Seed ortholog evalue1.5e-18
Seed eggNOG ortholog2880.D8LSN8
Preferred nameBUB3
KEGG koko:K02180,ko:K04532,ko:K14298
KEGG TC1.I.1
KEGG Pathwayko03013,ko04110,ko04111,ko05010,ko05164,ko05166,map03013,map04110,map04111,map05010,map05164,map05166
KEGG ModuleM00427
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0000070,GO:0000075,GO:0000228,GO:0000278,GO:0000280,GO:0000775,GO:0000776,GO:0000777,GO:0000778,GO:0000779,GO:0000780,GO:0000793,GO:0000794,GO:0000819,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005829,GO:0006508,GO:0006511,GO:0006807,GO:0006996,GO:0007049,GO:0007059,GO:0007088,GO:0007093,GO:0007094,GO:0007154,GO:0007165,GO:0007275,GO:0007346,GO:0008104,GO:0008150,GO:0008152,GO:0008608,GO:0009056,GO:0009057,GO:0009790,GO:0009792,GO:0009987,GO:0010498,GO:0010564,GO:0010639,GO:0010948,GO:0010965,GO:0016043,GO:0019538,GO:0019941,GO:0022402,GO:0022414,GO:0023052,GO:0030071,GO:0030163,GO:0031145,GO:0031570,GO:0031577,GO:0031974,GO:0031981,GO:0032182,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0033045,GO:0033046,GO:0033047,GO:0033048,GO:0033313,GO:0033316,GO:0033597,GO:0034613,GO:0035556,GO:0040020,GO:0043130,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044774,GO:0044779,GO:0045786,GO:0045835,GO:0045839,GO:0045841,GO:0045930,GO:0048285,GO:0048519,GO:0048523,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051129,GO:0051179,GO:0051276,GO:0051321,GO:0051445,GO:0051447,GO:0051603,GO:0051641,GO:0051716,GO:0051726,GO:0051783,GO:0051784,GO:0051983,GO:0051985,GO:0065007,GO:0070013,GO:0070727,GO:0071173,GO:0071174,GO:0071704,GO:0071840,GO:0072395,GO:0072413,GO:0072416,GO:0072477,GO:0072480,GO:0072486,GO:0098687,GO:0098813,GO:0140014,GO:1901564,GO:1901565,GO:1901575,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1901993,GO:1901994,GO:1902099,GO:1902100,GO:1902102,GO:1902103,GO:1903046,GO:1903047,GO:1905132,GO:1905133,GO:1905818,GO:1905819,GO:1990298,GO:2000241,GO:2000242,GO:2000816,GO:2001251
EggNOG free text desc.spindle assembly checkpoint
EggNOG OGsKOG1036@1,KOG1036@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019,ko03036,ko03041,ko04121
Exons1
Model size150
Cds size150
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816765.7788448-CDS-L-elsbetiae_contig6906:124..2741622816765.7788448-CDS-L-elsbetiae_contig6906:124..274Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6906 125..274 +
1691683796.7640204-CDS-L-elsbetiae_contig6906:124..2741691683796.7640204-CDS-L-elsbetiae_contig6906:124..274Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6906 125..274 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6906.15676.1prot_L-elsbetiae_contig6906.15676.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6906 125..274 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6906.15676.1

>prot_L-elsbetiae_contig6906.15676.1 ID=prot_L-elsbetiae_contig6906.15676.1|Name=mRNA_L-elsbetiae_contig6906.15676.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=50bp
MVNIWDGKNKKRLWQSNAYSTGIASLAFNHDGTRLAIAASYTFEQGAIA*
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mRNA from alignment at L-elsbetiae_contig6906:125..274+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6906.15676.1 ID=mRNA_L-elsbetiae_contig6906.15676.1|Name=mRNA_L-elsbetiae_contig6906.15676.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=150bp|location=Sequence derived from alignment at L-elsbetiae_contig6906:125..274+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTGAACATTTGGGACGGGAAGAACAAGAAGCGGCTGTGGCAGTCGAA
CGCCTACTCCACGGGTATCGCGTCGTTGGCCTTCAACCACGACGGCACGA
GGCTCGCGATCGCCGCCTCCTACACCTTCGAGCAGGGCGCCATCGCGTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6906:125..274+

>mRNA_L-elsbetiae_contig6906.15676.1 ID=mRNA_L-elsbetiae_contig6906.15676.1|Name=mRNA_L-elsbetiae_contig6906.15676.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=300bp|location=Sequence derived from alignment at L-elsbetiae_contig6906:125..274+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTGAACATTTGGGACGGGAAGAACAAGAAGCGGCTGTGGCAGTCGAA
CGCCTACTCCACGGGTATCGCGTCGTTGGCCTTCAACCACGACGGCACGA
GGCTCGCGATCGCCGCCTCCTACACCTTCGAGCAGGGCGCCATCGCGTAA
ATGGTGAACATTTGGGACGGGAAGAACAAGAAGCGGCTGTGGCAGTCGAA
CGCCTACTCCACGGGTATCGCGTCGTTGGCCTTCAACCACGACGGCACGA
GGCTCGCGATCGCCGCCTCCTACACCTTCGAGCAGGGCGCCATCGCGTAA
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