mRNA_L-elsbetiae_contig6904.15674.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6904.15674.1
Unique NamemRNA_L-elsbetiae_contig6904.15674.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6904.15674.1 vs. uniprot
Match: A0A6H5KWL2_9PHAE (Myosin motor domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWL2_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 2.470e-32
Identity = 52/65 (80.00%), Postives = 59/65 (90.77%), Query Frame = 1 
Query:    1 DARYLGGLHKTYVQHQDFPRTKPKDVRECFWVKHFAGKVKYTVHGWVERNMDRVPESFSSTLATS 195
            DARYL GLHK Y++HQDFP+T  K++RE FWVKH+AGKVKYTVHGWVERNMDRVPESF +TLATS
Sbjct:  125 DARYLDGLHKAYLRHQDFPQTAQKNMRENFWVKHYAGKVKYTVHGWVERNMDRVPESFGTTLATS 189
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BLAST of mRNA_L-elsbetiae_contig6904.15674.1 vs. uniprot
Match: D7G4Q7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4Q7_ECTSI)

HSP 1 Score: 123 bits (309), Expect = 2.800e-31
Identity = 51/66 (77.27%), Postives = 60/66 (90.91%), Query Frame = 1 
Query:    1 DARYLGGLHKTYVQHQDFPRTKPKDVRECFWVKHFAGKVKYTVHGWVERNMDRVPESFSSTLATST 198
            DARYL GLHKTY +H DFPRT+PKD+R+CFWVKH+AGKVKYT+ GWVERNMD +P+SF+ TLATST
Sbjct:  539 DARYLDGLHKTYARHMDFPRTQPKDMRDCFWVKHYAGKVKYTIGGWVERNMDSIPQSFNDTLATST 604
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BLAST of mRNA_L-elsbetiae_contig6904.15674.1 vs. uniprot
Match: A0A6H5KNS5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNS5_9PHAE)

HSP 1 Score: 123 bits (308), Expect = 3.810e-31
Identity = 51/66 (77.27%), Postives = 60/66 (90.91%), Query Frame = 1 
Query:    1 DARYLGGLHKTYVQHQDFPRTKPKDVRECFWVKHFAGKVKYTVHGWVERNMDRVPESFSSTLATST 198
            DARYL GLHKTY +H DFPRT+PKD+R+CFWVKH+AGKVKYT+ GWVERNMD +P+SF+ TLATST
Sbjct:  190 DARYLEGLHKTYARHMDFPRTQPKDMRDCFWVKHYAGKVKYTIGGWVERNMDSIPQSFNDTLATST 255
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BLAST of mRNA_L-elsbetiae_contig6904.15674.1 vs. uniprot
Match: D7FPQ0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPQ0_ECTSI)

HSP 1 Score: 123 bits (308), Expect = 3.830e-31
Identity = 53/66 (80.30%), Postives = 59/66 (89.39%), Query Frame = 1 
Query:    1 DARYLGGLHKTYVQHQDFPRTKPKDVRECFWVKHFAGKVKYTVHGWVERNMDRVPESFSSTLATST 198
            DARYL GLHKTY +HQDFPRT+P+D+RE FWVKH+AGKVKYTV GWVERNMDR+PESF  TLA ST
Sbjct:  515 DARYLDGLHKTYARHQDFPRTQPRDMRENFWVKHYAGKVKYTVEGWVERNMDRIPESFGGTLAAST 580
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BLAST of mRNA_L-elsbetiae_contig6904.15674.1 vs. uniprot
Match: A0A6H5JRA1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRA1_9PHAE)

HSP 1 Score: 122 bits (305), Expect = 9.720e-31
Identity = 52/66 (78.79%), Postives = 60/66 (90.91%), Query Frame = 1 
Query:    1 DARYLGGLHKTYVQHQDFPRTKPKDVRECFWVKHFAGKVKYTVHGWVERNMDRVPESFSSTLATST 198
            D+RYL  LHK + +H+DFPRTKP+D+RECFWV+H+AGKVKYTV GWVERNMDRVPESFSSTLA ST
Sbjct:  529 DSRYLSALHKEHERHEDFPRTKPQDMRECFWVRHYAGKVKYTVEGWVERNMDRVPESFSSTLAAST 594
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BLAST of mRNA_L-elsbetiae_contig6904.15674.1 vs. uniprot
Match: D8LMS5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMS5_ECTSI)

HSP 1 Score: 122 bits (305), Expect = 9.730e-31
Identity = 52/66 (78.79%), Postives = 60/66 (90.91%), Query Frame = 1 
Query:    1 DARYLGGLHKTYVQHQDFPRTKPKDVRECFWVKHFAGKVKYTVHGWVERNMDRVPESFSSTLATST 198
            D+RYL  LHK + +H+DFPRTKP+D+RECFWV+H+AGKVKYTV GWVERNMDRVPESFSSTLA ST
Sbjct:  529 DSRYLSALHKEHERHEDFPRTKPQDMRECFWVRHYAGKVKYTVEGWVERNMDRVPESFSSTLAAST 594
[Close]
BLAST of mRNA_L-elsbetiae_contig6904.15674.1 vs. uniprot
Match: D8LHQ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHQ0_ECTSI)

HSP 1 Score: 120 bits (300), Expect = 4.600e-30
Identity = 52/65 (80.00%), Postives = 59/65 (90.77%), Query Frame = 1 
Query:    1 DARYLGGLHKTYVQHQDFPRTKPKDVRECFWVKHFAGKVKYTVHGWVERNMDRVPESFSSTLATS 195
            DARYL GLHK Y++HQDFP+T  K++RE FWVKH+AGKVKYTVHGWVERNMDRVPESF +TLATS
Sbjct:  531 DARYLDGLHKAYLRHQDFPQTSQKNMRENFWVKHYAGKVKYTVHGWVERNMDRVPESFGTTLATS 595
[Close]
BLAST of mRNA_L-elsbetiae_contig6904.15674.1 vs. uniprot
Match: D8LMW4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMW4_ECTSI)

HSP 1 Score: 115 bits (287), Expect = 2.630e-28
Identity = 50/66 (75.76%), Postives = 58/66 (87.88%), Query Frame = 1 
Query:    1 DARYLGGLHKTYVQHQDFPRTKPKDVRECFWVKHFAGKVKYTVHGWVERNMDRVPESFSSTLATST 198
            DARYL GLHKTYV+HQ FPRTKPKD+RECF VKH+AG VKYTV GWVERNMD +P +F+++L TST
Sbjct:  521 DARYLDGLHKTYVRHQHFPRTKPKDMRECFSVKHYAGTVKYTVEGWVERNMDSIPVAFAASLGTST 586
[Close]
BLAST of mRNA_L-elsbetiae_contig6904.15674.1 vs. uniprot
Match: A0A6H5JLA2_9PHAE (Myosin motor domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLA2_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 6.590e-28
Identity = 49/65 (75.38%), Postives = 57/65 (87.69%), Query Frame = 1 
Query:    1 DARYLGGLHKTYVQHQDFPRTKPKDVRECFWVKHFAGKVKYTVHGWVERNMDRVPESFSSTLATS 195
            DARYL GLHKTYV+HQ FPRTKPKD+RECF VKH+AG VKYTV GWVERNMD +P +F+++L TS
Sbjct:  454 DARYLDGLHKTYVRHQHFPRTKPKDMRECFSVKHYAGTVKYTVEGWVERNMDSIPVAFAASLGTS 518
[Close]
BLAST of mRNA_L-elsbetiae_contig6904.15674.1 vs. uniprot
Match: A0A836C7J1_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7J1_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 2.420e-12
Identity = 29/65 (44.62%), Postives = 41/65 (63.08%), Query Frame = 1 
Query:    1 DARYLGGLHKTYVQHQDFPRTKPKDVRECFWVKHFAGKVKYTVHGWVERNMDRVPESFSSTLATS 195
            D  Y   LH  + + Q FP    K +++ F V+H+AG+V+YTV GW+ RN DR+PE+F   LA S
Sbjct:  567 DEGYTRQLHAKHARDQHFPAVHKKFMKDAFMVRHYAGRVQYTVDGWITRNNDRIPEAFQDVLAKS 631
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6904.15674.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KWL2_9PHAE2.470e-3280.00Myosin motor domain-containing protein n=1 Tax=Ect... [more]
D7G4Q7_ECTSI2.800e-3177.27Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KNS5_9PHAE3.810e-3177.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FPQ0_ECTSI3.830e-3180.30Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JRA1_9PHAE9.720e-3178.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LMS5_ECTSI9.730e-3178.79Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LHQ0_ECTSI4.600e-3080.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LMW4_ECTSI2.630e-2875.76Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JLA2_9PHAE6.590e-2875.38Myosin motor domain-containing protein n=1 Tax=Ect... [more]
A0A836C7J1_9STRA2.420e-1244.62P-loop containing nucleoside triphosphate hydrolas... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6904contigL-elsbetiae_contig6904:9564..10187 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score124.0
Seed ortholog evalue2.6e-26
Seed eggNOG ortholog2880.D7G4Q7
Hectar predicted targeting categoryother localisation
EggNOG free text desc.translation initiation factor activity
EggNOG OGsCOG5022@1,KOG0160@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size198
Cds size198
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816765.5264084-CDS-L-elsbetiae_contig6904:9563..96831622816765.5264084-CDS-L-elsbetiae_contig6904:9563..9683Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6904 9564..9683 -
1691683796.6229804-CDS-L-elsbetiae_contig6904:9563..96831691683796.6229804-CDS-L-elsbetiae_contig6904:9563..9683Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6904 9564..9683 -
1622816765.541006-CDS-L-elsbetiae_contig6904:10109..101871622816765.541006-CDS-L-elsbetiae_contig6904:10109..10187Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6904 10110..10187 -
1691683796.6354744-CDS-L-elsbetiae_contig6904:10109..101871691683796.6354744-CDS-L-elsbetiae_contig6904:10109..10187Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6904 10110..10187 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6904.15674.1prot_L-elsbetiae_contig6904.15674.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6904 9564..10187 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6904.15674.1

>prot_L-elsbetiae_contig6904.15674.1 ID=prot_L-elsbetiae_contig6904.15674.1|Name=mRNA_L-elsbetiae_contig6904.15674.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=66bp
DARYLGGLHKTYVQHQDFPRTKPKDVRECFWVKHFAGKVKYTVHGWVERN
MDRVPESFSSTLATST
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mRNA from alignment at L-elsbetiae_contig6904:9564..10187-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6904.15674.1 ID=mRNA_L-elsbetiae_contig6904.15674.1|Name=mRNA_L-elsbetiae_contig6904.15674.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=624bp|location=Sequence derived from alignment at L-elsbetiae_contig6904:9564..10187- (Laminarionema elsbetiae ELsaHSoW15)
GACGCCCGCTACTTGGGCGGTTTGCACAAGACCTACGTGCAGCATCAAGA
CTTCCCGCGCACCAAACCGAAGGACGTGGTGAGTACGCGCAGCAGTGGTG
CTATGTAAGAGATATCGAGCTATCTCTGTTGTCGTTGGTATTTTCTCGTC
TCTTGTTGGATTTTTTCTGTTTTGTTACCATTGGTTGGGACGCATTATTG
TGTTCACCTTGAGCTCGTTCGTGCAATGCCTACGAACGTCCTCGCGTGTG
TCTGGTCACCGCCGGCTGAAGGAGTGTCTGCTGTGTAGATGTAACGCCTA
AAGTGGGTAATGGCGTTTTTCGGTCCTGGGCTCGGACGCCGCCGCCTCAA
CATGCAAGCAAGCGCTTGACTCGCTTCGCAGCCGCAGCAGCACTCACGGG
GGGGGTATTGCTAGCGTTGGTCGCGCTGGAACTGATCGCAAGAATCTTGT
CCTGGATGCTCCTTTCTATCCCACTCACTCTCCTGTTGGAACCAATTATT
TCAGCGCGAATGCTTCTGGGTGAAGCACTTCGCCGGGAAAGTGAAGTACA
CCGTGCACGGGTGGGTGGAGAGGAACATGGACCGCGTCCCCGAGTCGTTC
AGCAGCACGCTAGCCACCAGCACG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6904:9564..10187-

>mRNA_L-elsbetiae_contig6904.15674.1 ID=mRNA_L-elsbetiae_contig6904.15674.1|Name=mRNA_L-elsbetiae_contig6904.15674.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=396bp|location=Sequence derived from alignment at L-elsbetiae_contig6904:9564..10187- (Laminarionema elsbetiae ELsaHSoW15)
GACGCCCGCTACTTGGGCGGTTTGCACAAGACCTACGTGCAGCATCAAGA
CTTCCCGCGCACCAAACCGAAGGACGTGGACGCCCGCTACTTGGGCGGTT
TGCACAAGACCTACGTGCAGCATCAAGACTTCCCGCGCACCAAACCGAAG
GACGTGCGCGAATGCTTCTGGGTGAAGCACTTCGCCGGGAAAGTGAAGTA
CACCGTGCACGGGTGGGTGGAGAGGAACATGGACCGCGTCCCCGAGTCGT
TCAGCAGCACGCTAGCCACCAGCACGCGCGAATGCTTCTGGGTGAAGCAC
TTCGCCGGGAAAGTGAAGTACACCGTGCACGGGTGGGTGGAGAGGAACAT
GGACCGCGTCCCCGAGTCGTTCAGCAGCACGCTAGCCACCAGCACG
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