mRNA_L-elsbetiae_contig6903.15673.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6903.15673.1
Unique NamemRNA_L-elsbetiae_contig6903.15673.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig6903.15673.1 vs. uniprot
Match: A0A6H5L8M0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8M0_9PHAE)

HSP 1 Score: 591 bits (1524), Expect = 3.370e-204
Identity = 317/422 (75.12%), Postives = 347/422 (82.23%), Query Frame = 1
Query:  124 MPAMSPANVSAAGTTSLPGVVQPRPALAMPQLL---QTT-GSGGVGGKRAAAGTLAHEDLSPTLEHESSKQPRTAGPGTSASVSTGGRRKGQLRQESKSCHGWCRTSKPTGNVRHACQGCGVDEGGEARACSYWLCQRCLGRWREKSRQSGGFWCCLHEGREWCPCKDRVS-KTSKPASVVDRSRLAQNRQESTDVYEFPTPTTSPPTAATTAASPRPCE-PGTTFSVCTSNSQNRVAVIKAGDRFKCSRNECRRVESLRSAETGDTESALPPHCAHADVVRVAERTSTEIPKAETLVSGEGFASALAKVPAGIFNPRTVAAMRARADQAAKEGMPLLVRVGNKKFFAVRDGQKFNRTAIDEWAHVKYEKGGRKMFQCKASNGSPCSDSSSRKNTGRCVHAAIVAVYIYDRHEPGVAGQELE 1371
            MP +SPANVSA      P   QPRPALAMPQLL   QTT  SGGVGGKRAAA TLAH DL PT +H+S  Q RT GPGTSAS STGGRRKGQL Q++ +CHG CR +KPTGNVRHACQG   DEGGEAR C+YW+CQ+C+GRW + S Q  GFWCCLH GREWCPC +RVS K SK  SVVDRSRLAQNRQESTDVYEFPT TTS PTAATTAASP P   PGTT+SVCTSNSQNRVAVIKAGDRF CSR +CRR+E L SA TGDT SALP  CAHA+VV  AERTS  +PKA+ L+S   F SAL KVPAG FNPRTVA+MRARADQAAKEG+PLLVRVGN K+FAVRDGQKFNRT I EW HVKY++ G K+FQCKASNGSPCSDSSSRK+TGRCVHAAIVAVYIYDR++ GVAG+ELE
Sbjct:  159 MPPLSPANVSAPSIAPGPRRAQPRPALAMPQLLPVPQTTVSSGGVGGKRAAAETLAHVDLIPTTDHDSDNQRRTDGPGTSASTSTGGRRKGQLAQQASTCHG-CRINKPTGNVRHACQG--GDEGGEARGCNYWVCQKCMGRWMQASGQPRGFWCCLHSGREWCPCAERVSTKRSKTVSVVDRSRLAQNRQESTDVYEFPT-TTSSPTAATTAASPTPPSGPGTTYSVCTSNSQNRVAVIKAGDRFLCSRPDCRRIEGLSSAATGDTASALPSRCAHAEVVIEAERTSMPMPKADALLSAGDFKSALDKVPAGTFNPRTVASMRARADQAAKEGLPLLVRVGNTKYFAVRDGQKFNRTVIGEWGHVKYDQRGSKVFQCKASNGSPCSDSSSRKSTGRCVHAAIVAVYIYDRYKSGVAGEELE 576          
BLAST of mRNA_L-elsbetiae_contig6903.15673.1 vs. uniprot
Match: A0A6H5L6Z2_9PHAE (CxC4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6Z2_9PHAE)

HSP 1 Score: 573 bits (1478), Expect = 1.370e-195
Identity = 313/449 (69.71%), Postives = 349/449 (77.73%), Query Frame = 1
Query:   43 MGVRGFDMGRAPTSPGSLSRAMVGGTRMPAMSPANVSAAGTTSLPGVVQPRPALAMPQLL---QTT-GSGGVGGKRAAAGTLAHEDLSPTLEHESSKQPRTAGPGTSASVSTGGRRKGQLRQESKSCHGWCRTSKPTGNVRHACQGCGVDEGGEARACSYWLCQRCLGRWREKSRQSGGFWCCLHEGREWCPCKDRVS-KTSKPASVVDRSRLAQNRQESTDVYEFPTPTTSPPTAATTAASPRPCE-PGTTFSVCTSNSQNRVAVIKAGDRFKCSRNECRRVESLRSAETGDTESALPPHCAHADVVRVAERTSTEIPKAETLVSGEGFASALAKVPAGIFNPRTVAAMRARADQAAKEGMPLLVRVGNKKFFAVRDGQKFNRTAIDEWAHVKYEKGGRKMFQCKASNGSPCSDSSSRKNTGRCVHAAIVAVYIYDRHEPGVAGQELE 1371
            MGV G DM  AP S G   RA + G  MP +             P   QPRPALAMPQLL   QTT  SGGVGGKRAAA TLAH DL PT +H+S  Q RT GPGTSAS STGGRRKGQL Q++ +CHG CR +KPTGNVRHACQG   DEGGEAR C+YW+ Q+C+GRW + S Q  GFWCCLH GREWCPC +R+S K SK  SVVDRSRLAQNRQESTDVYEFPT TTS PTAATTAASP P   PGTT+SVCTSN QNRVAVIKAG RF CSR +CRR+E L SA TGDT SALP  CAHA+VV  AE+TS  +PKA+ L+S   F SAL KVPAG FN RTVA+MRARADQAAKEG+PLLVRVGN K+FAVRDGQKFNRT I EW HVKY++ G K+FQCKAS+GSPCSD +SRK+TGRC+HAAIVAVYIYDR++ GVAG+ELE
Sbjct:   48 MGVGGADMRGAPGSSGGFPRATMCGAGMPPLXXXXXXXXXXXPGPRRAQPRPALAMPQLLPVPQTTVSSGGVGGKRAAAETLAHVDLIPTTDHDSDNQRRTDGPGTSASTSTGGRRKGQLAQQASTCHG-CRINKPTGNVRHACQG--GDEGGEARGCNYWVRQKCMGRWMQASGQPRGFWCCLHSGREWCPCAERISTKRSKAVSVVDRSRLAQNRQESTDVYEFPT-TTSSPTAATTAASPTPPSGPGTTYSVCTSNGQNRVAVIKAGARFLCSRPDCRRIEGLSSAATGDTASALPSRCAHAEVVIEAEKTSMPMPKADALLSAGDFESALDKVPAGTFNQRTVASMRARADQAAKEGLPLLVRVGNTKYFAVRDGQKFNRTVIGEWGHVKYDQRGSKVFQCKASDGSPCSDGASRKSTGRCIHAAIVAVYIYDRYKSGVAGEELE 492          
BLAST of mRNA_L-elsbetiae_contig6903.15673.1 vs. uniprot
Match: D7FN79_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN79_ECTSI)

HSP 1 Score: 294 bits (753), Expect = 2.650e-89
Identity = 178/369 (48.24%), Postives = 230/369 (62.33%), Query Frame = 1
Query:  175 PGVVQPRPALAMPQLL--------QTTGSGGVGGKRAAAGTLAHEDLSPTLEHESSKQPRTAGPGTSASVSTGGRRKGQLRQESKSCHGWCRTSKPTGNVRHACQGCGVDEGGEARACSYWLCQRCLGRWREKSRQSGGFWCCLHEGREWCPCKDRVSKTSKPASVVDRSRLAQNRQESTDVYEFPTPTTSPPTAATTAASPRPCE-PGTTFSVCTSNSQNRVAVIKAGDRFKCSRNECRRVESLRS--AETGDTESALPPHCAHADVVRVAERTSTEIPKAETLVSGEGFASALAK-VPAGIFNPRTVAAMRARADQAAKEGMPLLVRVGNKKFFAVRDGQKFNRTAIDEWAHVKYE-KGGRKMFQCK 1242
            PG  QPR  LAMP  +        QTTG+ G   +   AGT  HE+L+ ++E ES++Q   A  G S+SVSTGGRRKGQLR+++KSCHG CRT+KP   +++AC    VD  G     +YWLC+ C   W E S   G F CCLH G++WCPC  R      P   ++RS LA++R  ST ++EFP  T    T A T  S  P    G T+SVCTS    RVAVIK GD F CSR +CRRV++ ++  A TG T+SALP  C HA+VV  AER+S  +P A+ L S E F  AL   VPAG F+  T  AM ARADQAA++G+P+LV +G+ K+F + DG + NR  +  WAHVKY+ + G K+FQCK
Sbjct:  146 PGANQPRSPLAMPMFIPIRTSPAPQTTGTSGGVRENRGAGTFVHENLNSSVEPESNRQLAAAVLGMSSSVSTGGRRKGQLREQAKSCHG-CRTNKPGQGIKYAC----VD--GRNPRWNYWLCKSCFKEWTEASGVDG-FLCCLHRGKQWCPCNSRKRVRRGPVPALERSALAKSRIGSTSIFEFPARTRPALTVARTTPSATPTGGAGKTYSVCTSVGLQRVAVIKTGDEFICSRKDCRRVKNPQTSAAATGGTDSALPAPCCHAEVVLQAERSSMPMPTADPLFSAEEFRHALTTAVPAGAFSEGTTRAMHARADQAAEDGVPVLVGLGSTKYFGITDGLQNNRKVVGGWAHVKYDDRDGSKIFQCK 506          
BLAST of mRNA_L-elsbetiae_contig6903.15673.1 vs. uniprot
Match: A0A6H5KAW8_9PHAE (CxC4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAW8_9PHAE)

HSP 1 Score: 264 bits (674), Expect = 9.630e-77
Identity = 174/453 (38.41%), Postives = 223/453 (49.23%), Query Frame = 1
Query:  349 SASVSTGGRRKGQLRQESKSCHGWCRTSKPTGNVRHACQGCGVDEGGEARACSYWLCQRCLGRWREKSRQSGGFWCCLHEGREWCPCKDRVSKTSKPASVVDRSRLAQNRQESTDVYEFPTPTTSPPTAATTAASPRPCE-PGTTFSVCTSNSQNRVAVIKAGDRFKCSRNECRRVESLRSAETGDTESALPPHCAHADVVRVAERTSTEIPKAETLVSGEGFASALAKVPAGIFNPRTVAAMRARADQAAKEGMPLLVRVGNKKFFAVRDGQKFNRTAID------------------------------------------------------------------------------------------------------------------EWAHVKYE-KGGRKMFQCKASNGSPCSDSSSRKNTGRCVHAAIVAVYIYDRHEPGVAG 1359
            S+SVSTGGRRKGQL +E+++CH  CRT  P   +++AC        G++ AC YWLCQ+CL RW E+S + G F CCLH G  WCPCK+R    + P +V+DRS  A+ R   T V+EFP P+    TAATT  S  P    GTT+SVCTS S NRVAVIKAG+++ CSRN+C        + TG T+  LP  C HA+VV  AE +ST +PKA+ + S E F  AL  VP G FN  T  AM  RADQAA+EG+P+LV +G+ ++F ++DG + +RT I                                                                                                                   EWAHVKY+ KGG KMFQCK       +   SR+ TGRC HAAIVA+YIY R + G+ G
Sbjct:    2 SSSVSTGGRRKGQLTEEARTCHE-CRTKDPRQGIKNAC--------GDS-ACCYWLCQKCLERWTEQSGRDG-FQCCLHYGSLWCPCKNRTRVRTGPVAVLDRSTQAKTRHVRTSVFEFPAPSPPVVTAATTTLSATPTSGTGTTYSVCTSVSLNRVAVIKAGNKYMCSRNDC--------SATGVTDPPLPARCPHAEVVLEAEGSSTPMPKADPVFSAEEFRQALTTVPPGTFNESTTRAMHTRADQAAQEGVPVLVGLGSTRYFGIKDGHENDRTVIGGLYTIKAPGLSEPSLPRLSTKPVTSLHTPNTFTLFRKKRKIIDNARNVCRCATVRCRPHAPVSLLRCRCSGAAVAGPSTTKLDPLRFVHALVAVLPSRFLAFSLVALRRGEEGVEWAHVKYDDKGGSKMFQCKG-----WAKGKSRRKTGRCFHAAIVAIYIYHRDKIGLGG 430          
BLAST of mRNA_L-elsbetiae_contig6903.15673.1 vs. uniprot
Match: A0A6H5KZ13_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ13_9PHAE)

HSP 1 Score: 212 bits (540), Expect = 3.010e-61
Identity = 105/132 (79.55%), Postives = 118/132 (89.39%), Query Frame = 1
Query:  976 IPKAETLVSGEGFASALAKVPAGIFNPRTVAAMRARADQAAKEGMPLLVRVGNKKFFAVRDGQKFNRTAIDEWAHVKYEKGGRKMFQCKASNGSPCSDSSSRKNTGRCVHAAIVAVYIYDRHEPGVAGQELE 1371
            +PKA+ L+S   F SAL KVPAG FNPRTVA+MRARADQAAKEG+PLLVRVGN K+FAVRDGQKFNRT I EW HVKY++ G K+FQCKASNGSPCSDSSSRK+TGRCVHAAIVAVYIYDR++ GVAG+ELE
Sbjct:    3 MPKADALLSAGDFKSALDKVPAGTFNPRTVASMRARADQAAKEGLPLLVRVGNTKYFAVRDGQKFNRTVIGEWGHVKYDQRGSKVFQCKASNGSPCSDSSSRKSTGRCVHAAIVAVYIYDRYKSGVAGEELE 134          
BLAST of mRNA_L-elsbetiae_contig6903.15673.1 vs. uniprot
Match: A0A6H5KVV8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVV8_9PHAE)

HSP 1 Score: 191 bits (486), Expect = 2.450e-53
Identity = 112/242 (46.28%), Postives = 151/242 (62.40%), Query Frame = 1
Query:  535 RWREKSRQSGGFWCCLHEGREWCPCKDRVSKTSK-PASVVDRSRLAQNRQESTDVYEFPTPTTSPPTA-ATTAASPRPCEPGTTFSVCTSNSQNRVAVIKAGDRFKCSRNECRRVESL--RSAETGDTESALPPHCAHADVVRVAERTSTEIPKAETLV-SGEGFASALAKVPAGIFNPRTVAAMRARADQAAKEGMPLLVRVGNKKFFAVRDGQKFNRTAIDEWAHVKYEK-GGRKMFQCK 1242
            +W   S Q   F CC+H  +E CPC  R     K P S++DRS  A+ R   T V+E P+  T+P TA +T   +P P E GTT+S CTS  QNRV+V+++  R+ CSR EC+ +E+L  ++A  GDTE  L  HCAHADVV  A+ +S  +  A  L+ S E F  AL  VP G FN  T+ A+RAR  +A + G+P+LV++G+ KFFAVRDG  FNR  +  WAHVK E+ GG+   +CK
Sbjct:    3 KWLRSSAQLSHFMCCVHFEKEPCPCGKRKKNARKGPTSLLDRSTQARTRNVGTSVFELPSTQTTPTTADSTPTPAPTPRE-GTTYSTCTSVGQNRVSVVESNGRYMCSRPECKTIETLSAKAAAGGDTECVLRRHCAHADVVVQAKASSVPMAGATALLPSAEEFLRALDAVPTGTFNKHTMQAIRARVARAEELGIPVLVKLGDTKFFAVRDGPNFNRNIVGGWAHVKCEESGGKTTLRCK 243          
BLAST of mRNA_L-elsbetiae_contig6903.15673.1 vs. uniprot
Match: A0A6H5JH13_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH13_9PHAE)

HSP 1 Score: 187 bits (475), Expect = 1.990e-47
Identity = 112/208 (53.85%), Postives = 137/208 (65.87%), Query Frame = 1
Query:  637 PASVVDRSRLAQNRQESTDVYEFPTPTTSPP--TAATTAASPRPCE-PGTTFSVCTSNSQNRVAVIKAGDRFKCSRNECRRVESLRS--AETGDTESALPPHCAHADVVRVAERTSTEIPKAETLVSGEGFASALAKVPAGIFNPRTVAAMRARADQAAKEGMPLLVRVGNKKFFAVRDGQKFNRTAIDEWAHVKYE-KGGRKMFQCK 1242
            P  V+DRS  A+ R     V+EFP    SPP  TAATT  S  P    G T SVCTS S NRVAVIKAG+++ CSR+ECRRV ++++  A  G T S LP  C HA+VV  AER+ST +PKA+ L S   F  AL  VP G FN  T  AM  RADQAA+ G+P+LV +G+ + F ++DG + NRT I EWAHVKY+ KGG KMFQCK
Sbjct:  576 PVPVLDRSTQAKTRHVRASVFEFPA--RSPPVVTAATTTLSATPTSGTGATHSVCTSVSLNRVAVIKAGNKYMCSRDECRRVGNVQTSAAAAGVTGSPLPARCPHAEVVLEAERSSTPMPKADPLFSAGEFREALTTVPPGTFNKSTTRAMHTRADQAAQAGVPVLVGLGSTRCFEIKDGHENNRTVIGEWAHVKYDDKGGSKMFQCK 781          
BLAST of mRNA_L-elsbetiae_contig6903.15673.1 vs. uniprot
Match: D8LKG9_ECTSI (CxC4 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKG9_ECTSI)

HSP 1 Score: 147 bits (371), Expect = 4.870e-34
Identity = 86/167 (51.50%), Postives = 108/167 (64.67%), Query Frame = 1
Query:  775 TTFSVCTSNSQNRVAVIKAGDRFKCSRNECRRVESLRSA--ETGDTESALPPHCAHADVVRVAERTSTEIPKAETLVSGEG-FASALAKVPAGIFNPRTVAAMRARADQAAKEGMPLLVRVGNKKFFAVRDGQKFNRTAIDEWAHVKYEK----GGRKMFQCKASNG 1254
            TTFSVCT+ +Q RV+V+KA + F CSR ECR+VE LR+A    GDT SAL   C HADVVR AE +S  IP A   ++G+G F +ALA VP G FN + V AM+ R  +A +EG+P+LVR+    +FAVRDG  F R  I  W HVK       G   MFQCK ++G
Sbjct:  297 TTFSVCTALNQLRVSVVKANNVFMCSRGECRKVEQLRAAAGRQGDTNSALADRCQHADVVRKAEVSSQSIPTATACLNGDGEFENALASVPPGTFNEKMVRAMQQRYARAKEEGVPVLVRLAETAWFAVRDGVTFQRNVIGGWGHVKTRSDTTDGSGHMFQCKDTDG 463          
BLAST of mRNA_L-elsbetiae_contig6903.15673.1 vs. uniprot
Match: A0A6H5KLI9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLI9_9PHAE)

HSP 1 Score: 123 bits (308), Expect = 1.470e-29
Identity = 66/119 (55.46%), Postives = 79/119 (66.39%), Query Frame = 1
Query:  889 AETGDTESALPPHCAHADVVRVAERTSTEIPKAETLVSGEGFASALAKVPAGIFNPRTVAAMRARADQAAKEGMPLLVRVGNKKFFAVRDGQKFNRTAIDEWAHVKYE-KGGRKMFQCK 1242
            A TG T S LP  C   +VV   ER+ST +PKA+ L S   F  AL  VP G FN  T  AM  RADQAAKEG+P+LV +G+ + F ++DG + NRT I EWAHVKY+ KGG KMFQCK
Sbjct:   10 AATGVTGSPLPARCPPVEVVLEVERSSTPMPKADPLFSAGEFREALTTVPPGTFNESTTRAMHTRADQAAKEGVPVLVGLGSTRCFGIKDGHENNRTVIGEWAHVKYDDKGGSKMFQCK 128          
BLAST of mRNA_L-elsbetiae_contig6903.15673.1 vs. uniprot
Match: A0A6H5L2J5_9PHAE (CxC4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2J5_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 6.500e-8
Identity = 33/50 (66.00%), Postives = 37/50 (74.00%), Query Frame = 1
Query: 1228 MFQCKASNGSPCSDSSSRKNTGRCVHAAIVAVYIYDRHEPGVA-GQELER 1374
            M   K +NG+PCSDS+SRK+TGRCVHA IVAVYIYDR       G ELER
Sbjct:   16 MALVKGNNGNPCSDSTSRKHTGRCVHAGIVAVYIYDRQVSSSGEGPELER 65          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6903.15673.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6H5L8M0_9PHAE3.370e-20475.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L6Z2_9PHAE1.370e-19569.71CxC4 domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FN79_ECTSI2.650e-8948.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KAW8_9PHAE9.630e-7738.41CxC4 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KZ13_9PHAE3.010e-6179.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KVV8_9PHAE2.450e-5346.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JH13_9PHAE1.990e-4753.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LKG9_ECTSI4.870e-3451.50CxC4 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KLI9_9PHAE1.470e-2955.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L2J5_9PHAE6.500e-866.00CxC4 domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6903contigL-elsbetiae_contig6903:5825..8714 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size1717
Cds size1359
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6903.15673.1prot_L-elsbetiae_contig6903.15673.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6903 6141..8672 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816765.4347484-UTR-L-elsbetiae_contig6903:5824..61401622816765.4347484-UTR-L-elsbetiae_contig6903:5824..6140Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6903 5825..6140 -
1691683796.5478463-UTR-L-elsbetiae_contig6903:5824..61401691683796.5478463-UTR-L-elsbetiae_contig6903:5824..6140Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6903 5825..6140 -
1622816765.4911122-UTR-L-elsbetiae_contig6903:8672..87141622816765.4911122-UTR-L-elsbetiae_contig6903:8672..8714Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6903 8673..8714 -
1691683796.611747-UTR-L-elsbetiae_contig6903:8672..87141691683796.611747-UTR-L-elsbetiae_contig6903:8672..8714Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6903 8673..8714 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816765.4448156-CDS-L-elsbetiae_contig6903:6140..62991622816765.4448156-CDS-L-elsbetiae_contig6903:6140..6299Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6903 6141..6299 -
1691683796.5680408-CDS-L-elsbetiae_contig6903:6140..62991691683796.5680408-CDS-L-elsbetiae_contig6903:6140..6299Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6903 6141..6299 -
1622816765.4545088-CDS-L-elsbetiae_contig6903:6737..71101622816765.4545088-CDS-L-elsbetiae_contig6903:6737..7110Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6903 6738..7110 -
1691683796.5787776-CDS-L-elsbetiae_contig6903:6737..71101691683796.5787776-CDS-L-elsbetiae_contig6903:6737..7110Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6903 6738..7110 -
1622816765.467245-CDS-L-elsbetiae_contig6903:7332..75841622816765.467245-CDS-L-elsbetiae_contig6903:7332..7584Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6903 7333..7584 -
1691683796.589134-CDS-L-elsbetiae_contig6903:7332..75841691683796.589134-CDS-L-elsbetiae_contig6903:7332..7584Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6903 7333..7584 -
1622816765.4796078-CDS-L-elsbetiae_contig6903:8097..86721622816765.4796078-CDS-L-elsbetiae_contig6903:8097..8672Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6903 8098..8672 -
1691683796.601977-CDS-L-elsbetiae_contig6903:8097..86721691683796.601977-CDS-L-elsbetiae_contig6903:8097..8672Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6903 8098..8672 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6903.15673.1

>prot_L-elsbetiae_contig6903.15673.1 ID=prot_L-elsbetiae_contig6903.15673.1|Name=mRNA_L-elsbetiae_contig6903.15673.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=453bp
MGVRGFDMGRAPTSPGSLSRAMVGGTRMPAMSPANVSAAGTTSLPGVVQP
RPALAMPQLLQTTGSGGVGGKRAAAGTLAHEDLSPTLEHESSKQPRTAGP
GTSASVSTGGRRKGQLRQESKSCHGWCRTSKPTGNVRHACQGCGVDEGGE
ARACSYWLCQRCLGRWREKSRQSGGFWCCLHEGREWCPCKDRVSKTSKPA
SVVDRSRLAQNRQESTDVYEFPTPTTSPPTAATTAASPRPCEPGTTFSVC
TSNSQNRVAVIKAGDRFKCSRNECRRVESLRSAETGDTESALPPHCAHAD
VVRVAERTSTEIPKAETLVSGEGFASALAKVPAGIFNPRTVAAMRARADQ
AAKEGMPLLVRVGNKKFFAVRDGQKFNRTAIDEWAHVKYEKGGRKMFQCK
ASNGSPCSDSSSRKNTGRCVHAAIVAVYIYDRHEPGVAGQELERSMMAKW
TA*
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mRNA from alignment at L-elsbetiae_contig6903:5825..8714-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6903.15673.1 ID=mRNA_L-elsbetiae_contig6903.15673.1|Name=mRNA_L-elsbetiae_contig6903.15673.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2890bp|location=Sequence derived from alignment at L-elsbetiae_contig6903:5825..8714- (Laminarionema elsbetiae ELsaHSoW15)
CTCGGTGTGGAGCTGTTCAACCCGGGTAGTCGGCGAGTGCACATGGGCGT TCGCGGATTCGACATGGGAAGGGCACCGACGTCCCCGGGCTCTTTGTCTC GGGCGATGGTGGGTGGCACGAGAATGCCGGCGATGTCCCCAGCCAATGTG TCTGCAGCCGGTACCACTTCTCTCCCGGGTGTGGTCCAGCCACGCCCGGC ACTTGCAATGCCACAGCTTCTTCAGACCACAGGCAGTGGAGGGGTCGGGG GGAAGAGAGCAGCCGCAGGAACACTAGCACACGAGGACCTCAGCCCAACC CTGGAACATGAGAGCAGCAAGCAGCCACGGACTGCCGGGCCCGGCACTTC CGCCAGCGTATCGACGGGGGGGAGGCGGAAAGGGCAGCTGAGGCAAGAAA GCAAAAGTTGCCACGGATGGTGTAGGACCAGTAAACCCACGGGCAACGTC AGGCATGCTTGCCAGGGCTGTGGCGTCGACGAGGGTGGTGAGGCACGGGC ATGCAGCTATTGGCTGTGCCAGAGGTGTTTGGGACGATGGCGAGAAAAGT CTCGACAGTCGGGGGGGTTCTGGTGCTGCCTACATGAGGGGAGGGAGTGG TGCCCGTGCAAAGACAGGTGAGGTTTTGGGTTAGTAAAAAATGAATACCC ACACGTCGTTCATACAGCATGTGGATGAAACAGAAGGCTGCAGATATCGC TAGCCTCTTCATGAAAGAGTCAGAGAGGGGAGGTTTGGCTTGCATGTGGA CAGCAGAACTTCTTTGGATCAAATGTGCAGCTCAAGTCCATGCTCGTGCG GCGTTGAGAGAAAGATACCCCCAAGTAGAATGTAGAGCTGATGAAGTGAG GGGTGTACTTCCATATGCTATGGAAGATGGGGCGTACCGGGTAAGCGATA AGGGGTACGTTGTTATGTACCATATGCGTGAGATGAGCAGGCCTCGGATG AAAACTTCGAGGAACTTGTTCTTAATCTTGCAAGGTTCACCCGCAAAGCC TACAACCCCTAGAGCCATATCCTTGCAATCTGTCCTGTTTCTCTCGTATT GTCGACCGTCTTGTCTGATCCATGTTGCGGCGGCCGTCTTGCTCCACTAT TTGTGACGCCGTCTTCACCGCCTAATTTAGGGTTTCCAAGACGAGCAAGC CTGCCTCGGTGGTGGATCGATCCAGGCTAGCGCAGAATCGACAGGAGAGC ACGGACGTGTACGAGTTCCCGACACCGACAACGTCACCTCCCACGGCCGC AACTACAGCTGCTAGTCCCAGACCATGTGAACCGGGCACGACTTTTTCGG TGTGCACATCCAACAGCCAAAATCGCGTGGCGGTGATCAAGGCTGGTGAC CGGTTCAAGTGCTCGCGGAACGAATGCAGACGGTGAGAGACAGATTCAAG AGTTTCGACTCAAGAGTTTTCGTTGTTCGGAGTTAGGAGTTACGCGCATA GACTTCATCGTTGATAGTATTCCTCATAACATATCTTCCGGTTGAATCTC AAAGCGGCAACTGCTTCCTCAGAGCCGTTCGCTTTGGTGCTCGAACGCAA AAAGGTCTCACACTCGCCCCCATCACGCCAAAACTTCCGCCTTTTTTAAT CCAGAGTCGAGAGTCTCAGATCCGCAGAAACTGGCGATACGGAGTCTGCA CTGCCACCTCACTGCGCTCACGCAGACGTCGTGAGGGTTGCAGAGAGAAC ATCTACGGAGATACCAAAAGCAGAAACTCTAGTCTCGGGGGAGGGGTTTG CCAGCGCGTTGGCTAAAGTTCCGGCAGGAATTTTCAACCCACGCACGGTG GCAGCCATGCGCGCACGCGCTGACCAGGCGGCGAAAGAAGGCATGCCGTT GCTTGTTCGCGTCGGCAACAAGAAGTTCTTTGCGGTGCGGGACGGCCAGA AGTTCAACCGCACAGCGATTGACGAGTGGGCGCACGTGAAGTACGAGAAG GGCGGGAGAAAAATGTTCCAGTGCAAGGTGGGTGAAGTTTTTAAGGTTCA ACGTGCGGTGGGGTAGTGTCGTCATGGTTGAGGTGCTTGGGGGACGTGAG GGTACCGAGCTCTAGTTTGGCTAACCGTGGGTCCGACAGGAGTGATGTTT TTCTTGTACAAAGAAAATGATATTTGAGGTGGTGAGCCCAAGACCGATAA CACCTAAAGAGCGTGGGGCACTAAGTACATTGAAACTTGGGATATACCCA TTGGAAACACTGTGTCGGAATGGACATGACGTACATACGCGTTTTTTTTT CTGGGATGATGGATCGAAACGCACGCATCTGGAGGTTCCGACACCCGCAG GCCTTGCGAGTTGGCCACGAAACCCCACCCTCCAGCGCACCCCAATGCCC GGCTCAATGGCTGCTGACGTTTTTTTTCCCTCTCGACTTTTTCTCGTGCT GGCCTTTGACTTAAGGCAAGCAACGGCAGCCCGTGCAGTGACAGCTCGTC GAGGAAGAATACCGGCCGTTGTGTTCACGCCGCCATCGTTGCGGTGTACA TTTACGACCGGCACGAACCCGGCGTTGCGGGGCAAGAGCTGGAGCGGAGC ATGATGGCGAAATGGACGGCATGATGCGAACTAAGAGCACCCAGCAGTAG CTTTTCGTGTGTGCTCGTGCGCCGGTACGGCGAACGGTGGCGGCGGACCC TGATCCTACACACAGGAACCCATGACATTGTACACCACGGCCGGCACATG TCCTTACCATGTGCACATCCTCTTGGGTTATGGATATATGATACGAAACA AGTACTAGGGTCGATGTTATCTAACATAGAACAACAACTTTTGCCTCGAA GCGACCCATATGCTGCCGAAAACCAGCCCCCAGCGTCCGTTTCTCTACAA GTTGAAAAGGAGCATCCCGCCCGACACAAAAGAGACCCAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6903:5825..8714-

>mRNA_L-elsbetiae_contig6903.15673.1 ID=mRNA_L-elsbetiae_contig6903.15673.1|Name=mRNA_L-elsbetiae_contig6903.15673.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2718bp|location=Sequence derived from alignment at L-elsbetiae_contig6903:5825..8714- (Laminarionema elsbetiae ELsaHSoW15)
ATGGGCGTTCGCGGATTCGACATGGGAAGGGCACCGACGTCCCCGGGCTC
TTTGTCTCGGGCGATGGTGGGTGGCACGAGAATGCCGGCGATGTCCCCAG
CCAATGTGTCTGCAGCCGGTACCACTTCTCTCCCGGGTGTGGTCCAGCCA
CGCCCGGCACTTGCAATGCCACAGCTTCTTCAGACCACAGGCAGTGGAGG
GGTCGGGGGGAAGAGAGCAGCCGCAGGAACACTAGCACACGAGGACCTCA
GCCCAACCCTGGAACATGAGAGCAGCAAGCAGCCACGGACTGCCGGGCCC
GGCACTTCCGCCAGCGTATCGACGGGGGGGAGGCGGAAAGGGCAGCTGAG
GCAAGAAAGCAAAAGTTGCCACGGATGGTGTAGGACCAGTAAACCCACGG
GCAACGTCAGGCATGCTTGCCAGGGCTGTGGCGTCGACGAGGGTGGTGAG
GCACGGGCATGCAGCTATTGGCTGTGCCAGAGGTGTTTGGGACGATGGCG
AGAAAAGTCTCGACAGTCGGGGGGGTTCTGGTGCTGCCTACATGAGGGGA
GGGAGTGGTGCCCGTGCAAAGACAGATGGGCGTTCGCGGATTCGACATGG
GAAGGGCACCGACGTCCCCGGGCTCTTTGTCTCGGGCGATGGTGGGTGGC
ACGAGAATGCCGGCGATGTCCCCAGCCAATGTGTCTGCAGCCGGTACCAC
TTCTCTCCCGGGTGTGGTCCAGCCACGCCCGGCACTTGCAATGCCACAGC
TTCTTCAGACCACAGGCAGTGGAGGGGTCGGGGGGAAGAGAGCAGCCGCA
GGAACACTAGCACACGAGGACCTCAGCCCAACCCTGGAACATGAGAGCAG
CAAGCAGCCACGGACTGCCGGGCCCGGCACTTCCGCCAGCGTATCGACGG
GGGGGAGGCGGAAAGGGCAGCTGAGGCAAGAAAGCAAAAGTTGCCACGGA
TGGTGTAGGACCAGTAAACCCACGGGCAACGTCAGGCATGCTTGCCAGGG
CTGTGGCGTCGACGAGGGTGGTGAGGCACGGGCATGCAGCTATTGGCTGT
GCCAGAGGTGTTTGGGACGATGGCGAGAAAAGTCTCGACAGTCGGGGGGG
TTCTGGTGCTGCCTACATGAGGGGAGGGAGTGGTGCCCGTGCAAAGACAG
GGTTTCCAAGACGAGCAAGCCTGCCTCGGTGGTGGATCGATCCAGGCTAG
CGCAGAATCGACAGGAGAGCACGGACGTGTACGAGTTCCCGACACCGACA
ACGTCACCTCCCACGGCCGCAACTACAGCTGCTAGTCCCAGACCATGTGA
ACCGGGCACGACTTTTTCGGTGTGCACATCCAACAGCCAAAATCGCGTGG
CGGTGATCAAGGCTGGTGACCGGTTCAAGTGCTCGCGGAACGAATGCAGA
CGGGTTTCCAAGACGAGCAAGCCTGCCTCGGTGGTGGATCGATCCAGGCT
AGCGCAGAATCGACAGGAGAGCACGGACGTGTACGAGTTCCCGACACCGA
CAACGTCACCTCCCACGGCCGCAACTACAGCTGCTAGTCCCAGACCATGT
GAACCGGGCACGACTTTTTCGGTGTGCACATCCAACAGCCAAAATCGCGT
GGCGGTGATCAAGGCTGGTGACCGGTTCAAGTGCTCGCGGAACGAATGCA
GACGAGTCGAGAGTCTCAGATCCGCAGAAACTGGCGATACGGAGTCTGCA
CTGCCACCTCACTGCGCTCACGCAGACGTCGTGAGGGTTGCAGAGAGAAC
ATCTACGGAGATACCAAAAGCAGAAACTCTAGTCTCGGGGGAGGGGTTTG
CCAGCGCGTTGGCTAAAGTTCCGGCAGGAATTTTCAACCCACGCACGGTG
GCAGCCATGCGCGCACGCGCTGACCAGGCGGCGAAAGAAGGCATGCCGTT
GCTTGTTCGCGTCGGCAACAAGAAGTTCTTTGCGGTGCGGGACGGCCAGA
AGTTCAACCGCACAGCGATTGACGAGTGGGCGCACGTGAAGTACGAGAAG
GGCGGGAGAAAAATGTTCCAGTGCAAGAGTCGAGAGTCTCAGATCCGCAG
AAACTGGCGATACGGAGTCTGCACTGCCACCTCACTGCGCTCACGCAGAC
GTCGTGAGGGTTGCAGAGAGAACATCTACGGAGATACCAAAAGCAGAAAC
TCTAGTCTCGGGGGAGGGGTTTGCCAGCGCGTTGGCTAAAGTTCCGGCAG
GAATTTTCAACCCACGCACGGTGGCAGCCATGCGCGCACGCGCTGACCAG
GCGGCGAAAGAAGGCATGCCGTTGCTTGTTCGCGTCGGCAACAAGAAGTT
CTTTGCGGTGCGGGACGGCCAGAAGTTCAACCGCACAGCGATTGACGAGT
GGGCGCACGTGAAGTACGAGAAGGGCGGGAGAAAAATGTTCCAGTGCAAG
GCAAGCAACGGCAGCCCGTGCAGTGACAGCTCGTCGAGGAAGAATACCGG
CCGTTGTGTTCACGCCGCCATCGTTGCGGTGTACATTTACGACCGGCACG
AACCCGGCGTTGCGGGGCAAGAGCTGGAGCGGAGCATGATGGCGAAATGG
ACGGCATGAGCAAGCAACGGCAGCCCGTGCAGTGACAGCTCGTCGAGGAA
GAATACCGGCCGTTGTGTTCACGCCGCCATCGTTGCGGTGTACATTTACG
ACCGGCACGAACCCGGCGTTGCGGGGCAAGAGCTGGAGCGGAGCATGATG
GCGAAATGGACGGCATGA
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