prot_L-elsbetiae_contig69.15664.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig69.15664.1
Unique Nameprot_L-elsbetiae_contig69.15664.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length398
Homology
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BLAST of mRNA_L-elsbetiae_contig69.15664.1 vs. uniprot
Match: A0A6H5L0C5_9PHAE (VASt domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L0C5_9PHAE)

HSP 1 Score: 450 bits (1157), Expect = 1.070e-140
Identity = 245/369 (66.40%), Postives = 283/369 (76.69%), Query Frame = 0 
Query:   23 DERPARNAPPEPSESAPGTAISRALAVATRPCDS-FETMVEAVLPCTTAQVFAWVWGRRTTFWEDFLRAQGETGLEINQWRVAAVAAEARRRLSDLFPGETFDEQRELTFTHPRTGFVVGPKKVFTRQQQGFRVERRKRSSGARTSQGVTPMDRVVLCQTTMLERGAPMADTFTVLGRVVLSREPGQGPDREPRCRVHIGFDVAFHKSTMLRGAIRAGAQEETRNSWKSWLQATKKVVLYQRHQLGQKAANDGVAENPPANVFALARDF--KAGAATSAAGKVPRAVEGEAAAKALPGDIGWVNLIVGTVRWLVESGLAAVKSAGVPTVLALFCLLLVARQQREVQRLTTQLEEMLEDLRLEGLRNRVD 388
            DE P     PEPSE+APGTAISRALAVA RP DS FETMVEAVLPCTTAQVFAW+WGR T FW DFLRAQGETGL I  W   AV +EA R L DLFPGE FDEQRELTFTHPRTGFVVGPKKV TRQ QG+RVERR+  +G+R      PMDRVVLCQTTM+ERGAP+AD FT+LG+V+LSR+P  G D+EPRCRV IGFDVAFH+STMLRGAIR+GAQEETRNSWKSWL A+KKVV+YQRHQLG+ AANDGVA  PP  +FALA DF  + GA     G+ P   E E A +    +  W  L+VG  RWL E+G++A++SAGV TVL   CL LV  QQR+V+RL+ Q+EE++  +    +RN VD
Sbjct: 1480 DELPEDLLEPEPSETAPGTAISRALAVAGRPDDSKFETMVEAVLPCTTAQVFAWLWGRDTKFWADFLRAQGETGLTITPWGKTAVHSEAGRGLRDLFPGEAFDEQRELTFTHPRTGFVVGPKKVLTRQVQGYRVERREDWTGSRR-----PMDRVVLCQTTMMERGAPLADHFTLLGKVILSRDP-PGQDQEPRCRVCIGFDVAFHRSTMLRGAIRSGAQEETRNSWKSWLAASKKVVMYQRHQLGRTAANDGVAAKPPEGIFALAEDFVPQDGATAGVDGQAPCGAEMEPAIQPPEKNTDWAKLVVGAARWLAENGVSALESAGVSTVLIFVCLFLVMMQQRDVRRLSGQVEELVNAVG--EMRNNVD 1840
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig69.15664.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L0C5_9PHAE1.070e-14066.40VASt domain-containing protein n=2 Tax=Ectocarpus ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 357..381
NoneNo IPR availablePANTHERPTHR47666FAMILY NOT NAMEDcoord: 56..257
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 359..397
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 338..358
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..337
IPR031968VASt domainPFAMPF16016VAStcoord: 60..242
e-value: 6.9E-24
score: 85.0
IPR031968VASt domainPROSITEPS51778VASTcoord: 56..263
score: 22.877

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig69contigL-elsbetiae_contig69:25188..27833 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig69.15664.1mRNA_L-elsbetiae_contig69.15664.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig69 25179..28193 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig69.15664.1 ID=prot_L-elsbetiae_contig69.15664.1|Name=mRNA_L-elsbetiae_contig69.15664.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=398bp
MSPAAATGAVSPASLGDRFVARDERPARNAPPEPSESAPGTAISRALAVA
TRPCDSFETMVEAVLPCTTAQVFAWVWGRRTTFWEDFLRAQGETGLEINQ
WRVAAVAAEARRRLSDLFPGETFDEQRELTFTHPRTGFVVGPKKVFTRQQ
QGFRVERRKRSSGARTSQGVTPMDRVVLCQTTMLERGAPMADTFTVLGRV
VLSREPGQGPDREPRCRVHIGFDVAFHKSTMLRGAIRAGAQEETRNSWKS
WLQATKKVVLYQRHQLGQKAANDGVAENPPANVFALARDFKAGAATSAAG
KVPRAVEGEAAAKALPGDIGWVNLIVGTVRWLVESGLAAVKSAGVPTVLA
LFCLLLVARQQREVQRLTTQLEEMLEDLRLEGLRNRVDEQMMERELG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR031968VASt