mRNA_L-elsbetiae_contig6899.15659.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6899.15659.1
Unique NamemRNA_L-elsbetiae_contig6899.15659.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6899.15659.1 vs. uniprot
Match: D8LNB9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNB9_ECTSI)

HSP 1 Score: 108 bits (270), Expect = 3.790e-26
Identity = 71/129 (55.04%), Postives = 83/129 (64.34%), Query Frame = 1 
Query:  163 MSAGKRESLEIALRRTLGFHLGVDGTGQH-EQLVFALLDAAAEGGLRDGAAIAQEFADYLPDVT------NTSSPPSSPEKQREGQDSVELYEDVLRDARKYFPLDASENEEDDDRGGGRGSGDDVVEP 528
            MSA +RE LE ALRRTLGFHLG D  G   E LV ALLD+A EG L D AA+ +EF +YLP+V       ++ S PSS +K+ E    VELYEDVLRDA K+FPL  S  EE+   G G G  D V EP
Sbjct:    1 MSARRREDLETALRRTLGFHLGADVAGDDGEVLVSALLDSAEEGKLMDSAAVGREFDNYLPNVACAASSKSSLSSPSSEQKEEE----VELYEDVLRDALKHFPLAPSNPEEE---GSGSGEDDSVSEP 122
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6899.15659.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LNB9_ECTSI3.790e-2655.04Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6899contigL-elsbetiae_contig6899:461..1370 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score110.2
Seed ortholog evalue7.1e-22
Seed eggNOG ortholog2880.D8LNB9
Hectar predicted targeting categoryother localisation
EggNOG OGs2C6BY@1,2S89B@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-04_004430.1
Exons2
Model size530
Cds size366
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6899.15659.1prot_L-elsbetiae_contig6899.15659.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6899 461..1208 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816763.4774487-CDS-L-elsbetiae_contig6899:460..5571622816763.4774487-CDS-L-elsbetiae_contig6899:460..557Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6899 461..557 -
1691683795.1447-CDS-L-elsbetiae_contig6899:460..5571691683795.1447-CDS-L-elsbetiae_contig6899:460..557Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6899 461..557 -
1622816763.490115-CDS-L-elsbetiae_contig6899:939..12081622816763.490115-CDS-L-elsbetiae_contig6899:939..1208Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6899 940..1208 -
1691683795.157377-CDS-L-elsbetiae_contig6899:939..12081691683795.157377-CDS-L-elsbetiae_contig6899:939..1208Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6899 940..1208 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816763.5033417-UTR-L-elsbetiae_contig6899:1208..13701622816763.5033417-UTR-L-elsbetiae_contig6899:1208..1370Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6899 1209..1370 -
1691683795.1704085-UTR-L-elsbetiae_contig6899:1208..13701691683795.1704085-UTR-L-elsbetiae_contig6899:1208..1370Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6899 1209..1370 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6899.15659.1

>prot_L-elsbetiae_contig6899.15659.1 ID=prot_L-elsbetiae_contig6899.15659.1|Name=mRNA_L-elsbetiae_contig6899.15659.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=122bp
MSAGKRESLEIALRRTLGFHLGVDGTGQHEQLVFALLDAAAEGGLRDGAA
IAQEFADYLPDVTNTSSPPSSPEKQREGQDSVELYEDVLRDARKYFPLDA
SENEEDDDRGGGRGSGDDVVEP
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mRNA from alignment at L-elsbetiae_contig6899:461..1370-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6899.15659.1 ID=mRNA_L-elsbetiae_contig6899.15659.1|Name=mRNA_L-elsbetiae_contig6899.15659.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=910bp|location=Sequence derived from alignment at L-elsbetiae_contig6899:461..1370- (Laminarionema elsbetiae ELsaHSoW15)
CAAGGGTGATGCTCGGTGCTTGAAGGAGGTAAGGGAAGAGAGAGAGCGAG
AGAAGGGGAGTGCAGGCGACCTGCCTGCATTCTGCTTGTGTACAAACGGG
CCCGCGCAAGACAACGACAGACAGGTGTTCGCACCCACCCACGCTGTTTC
TACCGATAAACGATGAGCGCTGGAAAGCGAGAGTCGCTCGAAATCGCTCT
ACGCAGGACTCTGGGCTTTCATCTCGGTGTGGACGGGACGGGTCAACACG
AACAGCTCGTTTTCGCCCTGCTTGATGCCGCCGCAGAGGGAGGCTTGAGA
GATGGCGCGGCCATCGCACAAGAGTTTGCGGACTACCTGCCGGATGTGAC
CAACACAAGCTCTCCTCCCTCTTCTCCTGAAAAGCAACGGGAGGGACAGG
ACAGCGTGGAGCTGTACGAGGACGTATTGAGGTTGGTTCCAGGAGGGTCT
ACCGTTGTACAGCAGTAAATCACCTAGATGCCTACCTGCCTGGTATTGCT
GCCAGACACATATTTGCACGGACCACGCCGTTGTACAAGATGGGCACGGT
GACTACGCGAAGCCAGATGTAGACAAGCTCAGCGATTGTACCGAGTTGCA
TACGTATTCCTAAGATGAACGACACACCCTCTGTGCACCACGGGCTGAAG
TACCAGATCTCCGGCCGGCTCTTGGGTTTCTAAATCAGCTTTTGCTCCCC
CAGTATTTCACGTCAACACTTCAGCAACAACGGACACCTGGATGTCATCA
TCTAGTGTGCTTGCGATCTAAACGTTGTCGAACCCCCAACTACCATTTTG
CGTCTTCCTGCAGGGACGCACGGAAGTACTTCCCGTTAGACGCCTCAGAA
AACGAAGAAGACGACGACCGCGGCGGCGGCAGAGGGAGCGGGGATGATGT
GGTCGAACCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6899:461..1370-

>mRNA_L-elsbetiae_contig6899.15659.1 ID=mRNA_L-elsbetiae_contig6899.15659.1|Name=mRNA_L-elsbetiae_contig6899.15659.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=732bp|location=Sequence derived from alignment at L-elsbetiae_contig6899:461..1370- (Laminarionema elsbetiae ELsaHSoW15)
ATGAGCGCTGGAAAGCGAGAGTCGCTCGAAATCGCTCTACGCAGGACTCT
GGGCTTTCATCTCGGTGTGGACGGGACGGGTCAACACGAACAGCTCGTTT
TCGCCCTGCTTGATGCCGCCGCAGAGGGAGGCTTGAGAGATGGCGCGGCC
ATCGCACAAGAGTTTGCGGACTACCTGCCGGATGTGACCAACACAAGCTC
TCCTCCCTCTTCTCCTGAAAAGCAACGGGAGGGACAGGACAGCGTGGAGC
TGTACGAGGACGTATTGAGATGAGCGCTGGAAAGCGAGAGTCGCTCGAAA
TCGCTCTACGCAGGACTCTGGGCTTTCATCTCGGTGTGGACGGGACGGGT
CAACACGAACAGCTCGTTTTCGCCCTGCTTGATGCCGCCGCAGAGGGAGG
CTTGAGAGATGGCGCGGCCATCGCACAAGAGTTTGCGGACTACCTGCCGG
ATGTGACCAACACAAGCTCTCCTCCCTCTTCTCCTGAAAAGCAACGGGAG
GGACAGGACAGCGTGGAGCTGTACGAGGACGTATTGAGGGACGCACGGAA
GTACTTCCCGTTAGACGCCTCAGAAAACGAAGAAGACGACGACCGCGGCG
GCGGCAGAGGGAGCGGGGATGATGTGGTCGAACCGGGACGCACGGAAGTA
CTTCCCGTTAGACGCCTCAGAAAACGAAGAAGACGACGACCGCGGCGGCG
GCAGAGGGAGCGGGGATGATGTGGTCGAACCG
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