mRNA_L-elsbetiae_contig6895.15657.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6895.15657.1
Unique NamemRNA_L-elsbetiae_contig6895.15657.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6895.15657.1 vs. uniprot
Match: D7FK06_ECTSI (CRAL/TRIO domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK06_ECTSI)

HSP 1 Score: 153 bits (387), Expect = 1.430e-40
Identity = 76/96 (79.17%), Postives = 84/96 (87.50%), Query Frame = 2 
Query:    2 KGFVAETEAFLRWSRRTGELQVVPPLESVDLPGEKKFTEGCLKLLSAHAAAVLHKEPGKLTAREEARMAYAIGDGMYTISRLSSHLGALVAGLPTE 289
            +G +AET AF+ WS RTGELQ VPPLE+VD+PGE+ FTEGCLKLLSAHAAAVL KEP +LTAREEARMAYAIG GMYTI RLS+HL AL AGLPTE
Sbjct: 1192 EGSIAETAAFIEWSHRTGELQEVPPLETVDMPGERAFTEGCLKLLSAHAAAVLRKEPEQLTAREEARMAYAIGGGMYTIERLSAHLDALRAGLPTE 1287
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BLAST of mRNA_L-elsbetiae_contig6895.15657.1 vs. uniprot
Match: A0A6H5KAS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAS6_9PHAE)

HSP 1 Score: 132 bits (331), Expect = 5.050e-33
Identity = 73/128 (57.03%), Postives = 82/128 (64.06%), Query Frame = 2 
Query:    2 KGFVAETEAFLRWSRRTGELQVVPPLESVDLPGEKKFTEGCLK--------------------------------LLSAHAAAVLHKEPGKLTAREEARMAYAIGDGMYTISRLSSHLGALVAGLPTE 289
            +G +AET AF+ WS RTGELQ +PPLE+VD+PGE+ FTEGCLK                                LLSAHAAAVL KEP +LTAREE RMAYAIG G YTI RLS+HL AL AGLPTE
Sbjct: 1379 EGSIAETAAFIEWSHRTGELQELPPLETVDMPGERAFTEGCLKTKHASQPVALGVHPSVFLIASAFLPVLSAPSQLLSAHAAAVLRKEPEQLTAREEVRMAYAIGGGTYTIERLSAHLDALGAGLPTE 1506
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6895.15657.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FK06_ECTSI1.430e-4079.17CRAL/TRIO domain containing protein n=1 Tax=Ectoca... [more]
A0A6H5KAS6_9PHAE5.050e-3357.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6895contigL-elsbetiae_contig6895:8265..9073 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size407
Cds size342
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6895.15657.1prot_L-elsbetiae_contig6895.15657.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6895 8330..9073 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816763.3296418-UTR-L-elsbetiae_contig6895:8264..83291622816763.3296418-UTR-L-elsbetiae_contig6895:8264..8329Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6895 8265..8329 -
1691683795.008898-UTR-L-elsbetiae_contig6895:8264..83291691683795.008898-UTR-L-elsbetiae_contig6895:8264..8329Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6895 8265..8329 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816763.340911-CDS-L-elsbetiae_contig6895:8329..85411622816763.340911-CDS-L-elsbetiae_contig6895:8329..8541Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6895 8330..8541 -
1691683795.0201678-CDS-L-elsbetiae_contig6895:8329..85411691683795.0201678-CDS-L-elsbetiae_contig6895:8329..8541Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6895 8330..8541 -
1622816763.351114-CDS-L-elsbetiae_contig6895:8943..90731622816763.351114-CDS-L-elsbetiae_contig6895:8943..9073Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6895 8944..9073 -
1691683795.039053-CDS-L-elsbetiae_contig6895:8943..90731691683795.039053-CDS-L-elsbetiae_contig6895:8943..9073Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6895 8944..9073 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6895.15657.1

>prot_L-elsbetiae_contig6895.15657.1 ID=prot_L-elsbetiae_contig6895.15657.1|Name=mRNA_L-elsbetiae_contig6895.15657.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=114bp
QGFRGGDGGVLAVESPHRGAAGGAPVGVGGPARGEKVHRGVSQALERARR
GGSPQGAGEIDGERGGPHGLRHRRRDVHHLEAVQPPRRARGRPSHGIDTL
HTQLDAIISIFLL*
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mRNA from alignment at L-elsbetiae_contig6895:8265..9073-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6895.15657.1 ID=mRNA_L-elsbetiae_contig6895.15657.1|Name=mRNA_L-elsbetiae_contig6895.15657.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=809bp|location=Sequence derived from alignment at L-elsbetiae_contig6895:8265..9073- (Laminarionema elsbetiae ELsaHSoW15)
CAAGGGTTTCGTGGCGGAGACGGAGGCGTTCTTGCGGTGGAGTCGCCGCA
CCGGGGAGCTGCAGGTGGTGCCCCCGTTGGAGTCGGTGGACCTGCCCGGG
GAGAAAAAGTTCACAGAGGGGTGTCTCAAGGTAAAAAAACGTCTTGCTGG
AAGTAACAACGTGCATTGCTCTTGTGTAATTGTTGCTCGCGTGTATGTAG
AAGCACGCCAAGCTCAGGGGCATCGGGGAAAACCTTCACCCCTCTTTTGG
GCCCAACCAAGGTGACATAAAACTTGCAGGCAATCCCCCCCCCCCCCCCC
TTCTAAATAGAGTATGTAGCAAAAAAACGTGTGAATGTATGTCCTCAGCA
GTTAATGTTGCTTCAAGTATTGTAGCGCCCTTTTGTTGTGCGTCTCATTT
TGTTTTTTCCGGTGGGACGGGATGCGCCTCACTTTGTTTTTATTTTTATT
TTTATTTAATGTTTATTTTTGTCGTTTTGTATATATGCCACCTCTGTGTT
TTTGTGGCGCGTTCCCCTGCCCCCCCATCCAGCTCTTGAGCGCGCACGCC
GCGGCGGTTCTCCACAAGGAGCCGGGGAAATTGACGGCGAGAGAGGAGGC
CCGCATGGCCTACGCCATCGGCGACGGGATGTACACCATCTCGAGGCTGT
CCAGCCACCTCGGCGCGCTCGTGGCCGGCCTTCCCACGGAATAGACACCC
TACACACGCAGTTAGACGCAATCATAAGTATCTTTTTATTATAGGTGTAC
TACTGCTATAGTTTGCGAGCATGGAAAGCGCGAGGTGGAGGTCGGCTGCC
TCGGTCGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6895:8265..9073-

>mRNA_L-elsbetiae_contig6895.15657.1 ID=mRNA_L-elsbetiae_contig6895.15657.1|Name=mRNA_L-elsbetiae_contig6895.15657.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=684bp|location=Sequence derived from alignment at L-elsbetiae_contig6895:8265..9073- (Laminarionema elsbetiae ELsaHSoW15)
CAAGGGTTTCGTGGCGGAGACGGAGGCGTTCTTGCGGTGGAGTCGCCGCA
CCGGGGAGCTGCAGGTGGTGCCCCCGTTGGAGTCGGTGGACCTGCCCGGG
GAGAAAAAGTTCACAGAGGGGTGTCTCAAGCAAGGGTTTCGTGGCGGAGA
CGGAGGCGTTCTTGCGGTGGAGTCGCCGCACCGGGGAGCTGCAGGTGGTG
CCCCCGTTGGAGTCGGTGGACCTGCCCGGGGAGAAAAAGTTCACAGAGGG
GTGTCTCAAGCTCTTGAGCGCGCACGCCGCGGCGGTTCTCCACAAGGAGC
CGGGGAAATTGACGGCGAGAGAGGAGGCCCGCATGGCCTACGCCATCGGC
GACGGGATGTACACCATCTCGAGGCTGTCCAGCCACCTCGGCGCGCTCGT
GGCCGGCCTTCCCACGGAATAGACACCCTACACACGCAGTTAGACGCAAT
CATAAGTATCTTTTTATTATAGCTCTTGAGCGCGCACGCCGCGGCGGTTC
TCCACAAGGAGCCGGGGAAATTGACGGCGAGAGAGGAGGCCCGCATGGCC
TACGCCATCGGCGACGGGATGTACACCATCTCGAGGCTGTCCAGCCACCT
CGGCGCGCTCGTGGCCGGCCTTCCCACGGAATAGACACCCTACACACGCA
GTTAGACGCAATCATAAGTATCTTTTTATTATAG
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