mRNA_L-elsbetiae_contig6885.15645.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig6885.15645.1 vs. uniprot
Match: A0A6H5L2E6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2E6_9PHAE) HSP 1 Score: 213 bits (541), Expect = 1.080e-58 Identity = 135/347 (38.90%), Postives = 159/347 (45.82%), Query Frame = 1 Query: 13 QYTLGLFSSTAAPSDETQAGSGEVVRGRLMKLQRTR-----RALEAGGGASTSGVIPATNSALAEDSWDHWGELGMHKGELSCKCRLVLPLNPDVVQEPVVVTETVIRTVLGAGGAMTQESVETETVVHRTSFRFSHSDLVAVSGTLVEELSTLKAWQHLPLWKVANADVNPLPIHEDLFHVDADTVGVAPVGGTGNEKVVCKLCTAQLPRSKMRMHVGGHILKDKALQVSTVCGFCGGSGCRTTIKDPIGRAAPVMHSSCIYAPRNDARHETVAVNLKSARAGSRSSPCTNIVVKCIFCSQETYIWKYGMADHVTRCHHQDTLVEDGTESAKKFKHNYTVSGSEKS 1038 QY LGLFS T AP DE V +GRLMKLQR++ A+ G G TS + A A+DSW HWG+LG+HKGELSCKCRLVL L+PD +D + GGHILKDK VST CGFCGG G TTI DP G+A P++HS+C APR+DAR E VA+NL SARAGS +S CTN+V KC FCSQ YIWKY M+DH+TRCH D LV +GT A FK T+S SEK+ Sbjct: 304 QYALGLFSCTKAPMDEQAQDGSPVFKGRLMKLQRSKVAPAVGAVRLGEGDGTSSSDFGEDGAPAKDSWQHWGDLGLHKGELSCKCRLVLALDPD----------------------------------------------------------------------------------DDAYR-------------------------------------GGHILKDK---VSTACGFCGGVGRPTTIHDPPGKARPLVHSTCPSAPRSDARQEAVALNLSSARAGSDTSLCTNMVFKCFFCSQYNYIWKYSMSDHITRCHQADVLVAEGT-GADNFKETCTISESEKA 527
BLAST of mRNA_L-elsbetiae_contig6885.15645.1 vs. uniprot
Match: A0A6H5K6M3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6M3_9PHAE) HSP 1 Score: 187 bits (474), Expect = 3.260e-47 Identity = 100/183 (54.64%), Postives = 120/183 (65.57%), Query Frame = 1 Query: 556 VGVAPVGGTGNEKVVCKLCTAQLPRSKMRMHVGGHILKDKALQVSTVCGFCGGSGCRTTIKDPIGRAAPVMHSSCIYAPRNDARHETVAVNLKSARAGSRSSPCTNIVVKCIFCSQETYIWKYGMADHVTRCHHQDTLVEDGTESAKKFKHNYTVSGSEKSAVLNKFKGGTPRKRREDDTLPP 1104 V A VG T + +V C HVGG +K VSTVCGFCGG GCR+TI DP G A P++HS+C APR+DAR E VA+NL SARA S +SPCTN+V+KC CSQ+ YIW YGM DHVTRCH + LV GT A KFK T+S SEK+ VL+K K G PR+R + +TLPP Sbjct: 1057 VEAAGVGNTDSRGIVVGDC-----------HVGGDP-GNKTSPVSTVCGFCGGVGCRSTIHDPPGEARPLVHSTCPSAPRSDARQEAVALNLSSARADSDTSPCTNMVLKCFLCSQDNYIWNYGMFDHVTRCHQANVLVAVGT-GADKFKEACTISESEKAKVLHKVKAGRPRRRDQGNTLPP 1226
BLAST of mRNA_L-elsbetiae_contig6885.15645.1 vs. uniprot
Match: D7FNW9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNW9_ECTSI) HSP 1 Score: 109 bits (272), Expect = 7.350e-24 Identity = 54/102 (52.94%), Postives = 71/102 (69.61%), Query Frame = 1 Query: 874 IVVKCIFCSQETYIWKYGMADHVTRCHHQDTLVEDGTESAKKFKHNYTVSGSEKSAVLNKFKGGTPRKRRE-DDTLPPGIRRVVSGNGVPRRGVPGARPLEE 1176 +V+KC+FCSQ+TYIWKYGM++HVTRCH +D LV GT + +FK YT+S SEK+ VL KFK G PR+R + ++ LP G GNG R + G R LE+ Sbjct: 1 MVLKCLFCSQDTYIWKYGMSEHVTRCHREDILVAAGT-TVDRFKEAYTISESEKAKVLQKFKAGRPRRRGQGNEALPTGALGSTEGNGTFGRNMSGTRSLED 101
BLAST of mRNA_L-elsbetiae_contig6885.15645.1 vs. uniprot
Match: A0A6H5K5R3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5R3_9PHAE) HSP 1 Score: 97.8 bits (242), Expect = 6.800e-20 Identity = 50/102 (49.02%), Postives = 65/102 (63.73%), Query Frame = 1 Query: 874 IVVKCIFCSQETYIWKYGMADHVTRCHHQDTLVEDGTESAKKFKHNYTVSGSEKSAVLNKFKGGTPRKRRE-DDTLPPGIRRVVSGNGVPRRGVPGARPLEE 1176 +V+KC CSQ YIWKYGM++HVTR H +D V GT KFK Y++S SEK+ L+KFK G PR+R + ++ LPPG GNG R + G R LE+ Sbjct: 1 MVLKCFVCSQNNYIWKYGMSEHVTRRHQEDMRVAAGT-GVDKFKEAYSISESEKAKALHKFKAGKPRQRGQGNEVLPPGALGRTEGNGASGRNMAGTRSLED 101
BLAST of mRNA_L-elsbetiae_contig6885.15645.1 vs. uniprot
Match: A0A4S4MVC7_9APHY (Uncharacterized protein n=1 Tax=Antrodiella citrinella TaxID=2447956 RepID=A0A4S4MVC7_9APHY) HSP 1 Score: 63.9 bits (154), Expect = 5.460e-7 Identity = 45/144 (31.25%), Postives = 65/144 (45.14%), Query Frame = 1 Query: 586 NEKVVCKLCTAQLPRSKMRMHVGGHIL------KDKALQVST-VCGFCGGSGCRTTIKDPIGRAAPVMHSSCIYAPRNDARHETVAVNLKSARAGSRSSPCTNIVVKCIFCSQETY-----IWKYGMADHVTRCHHQDTLVEDG 981 ++++ C+LC P S+MR HVG HIL +D + + CGFCG GC + D + S+C Y H T + A S ++PCTN+ + C+ C + IWKY H+T H L E G Sbjct: 769 DDEIQCQLCEVNTPLSRMRNHVGIHILHALRGIEDDGIVIGVDPCGFCGLEGCVVQMIDSDDGNTHRILSNCEY-------HYT-QMKYGPASRFSNATPCTNVPIHCLSCERTASGLPRTIWKYNALYHIT-LDHSHWLDESG 903
BLAST of mRNA_L-elsbetiae_contig6885.15645.1 vs. uniprot
Match: B0DV83_LACBS (Predicted protein n=1 Tax=Laccaria bicolor (strain S238N-H82 / ATCC MYA-4686) TaxID=486041 RepID=B0DV83_LACBS) HSP 1 Score: 54.7 bits (130), Expect = 2.190e-5 Identity = 41/117 (35.04%), Postives = 60/117 (51.28%), Query Frame = 1 Query: 580 TGNEKVVCKLCTAQLPRSKMRMHVGGHILKD---------KALQVSTVCGFCG-GSGCRTTIKDPIGRAAPVMHSSCIYAPRNDARHETVAVNLKSARAGSRSSPCTNIVVKCIFCS 900 +G V C+LC + SKMR+HVG HIL K++ S CGFCG SGC+T + A V+ S+C + +E + K+A +++SPCTNI + C C+ Sbjct: 28 SGATDVNCELCGEKTTISKMRVHVGKHILYSMRRRPDVELKSMGASP-CGFCGLDSGCQTQLTFKKNGVA-VIKSTCPF------HYEKM--QYKAALEPTKASPCTNIPIHCRLCA 134 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6885.15645.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig6885.15645.1 >prot_L-elsbetiae_contig6885.15645.1 ID=prot_L-elsbetiae_contig6885.15645.1|Name=mRNA_L-elsbetiae_contig6885.15645.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=514bp MGRGQYTLGLFSSTAAPSDETQAGSGEVVRGRLMKLQRTRRALEAGGGASback to top mRNA from alignment at L-elsbetiae_contig6885:777..2661- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig6885.15645.1 ID=mRNA_L-elsbetiae_contig6885.15645.1|Name=mRNA_L-elsbetiae_contig6885.15645.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1885bp|location=Sequence derived from alignment at L-elsbetiae_contig6885:777..2661- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig6885:777..2661- >mRNA_L-elsbetiae_contig6885.15645.1 ID=mRNA_L-elsbetiae_contig6885.15645.1|Name=mRNA_L-elsbetiae_contig6885.15645.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3084bp|location=Sequence derived from alignment at L-elsbetiae_contig6885:777..2661- (Laminarionema elsbetiae ELsaHSoW15)back to top |