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Homology
BLAST of mRNA_L-elsbetiae_contig688.15637.1 vs. uniprot
Match: A0A6H5K792_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K792_9PHAE) HSP 1 Score: 183 bits (465), Expect = 8.060e-52 Identity = 124/229 (54.15%), Postives = 149/229 (65.07%), Query Frame = 1
Query: 1 QSLQPLAVVKICLRRLGLAHTGVEGEAEVEVGGSDQLRRLVGQVVGHKRITAVLEELQDRVTLRRREKLAESEGRSLPGQGQGRAARSKGKAKKAAAAESHWQQVGXXXXXXXXXXXXXXPAAAGSVGSAFVSLSGESPGDEE---PSRSARAAVGNYYNKDIANANASPRPKRWKPDPPAAGKTSKTSTTSSRVNSSVGD--------RASSEPGWAGADRAAGWGRG 654
+SLQPL+VVKICLRRLGLAHTGV+GEAEVEV G +L+RLVG+VV HKR+ V+EELQ+RVT+RRREKLAESEGRSLPGQG+G A +GK K A+ H +Q G AAA + GSAFVSLSGESP D+ PS ++R NYYNKDIANA+A+P +P+ + R+S+EPGWAGADRAAGWGRG
Sbjct: 144 KSLQPLSVVKICLRRLGLAHTGVQGEAEVEVEGGAELQRLVGKVVEHKRVAVVMEELQERVTMRRREKLAESEGRSLPGQGRG-ATGKQGKGNKKTPAKIHERQGGARKSGVARAAA----AAATTAGSAFVSLSGESPSDDHDAGPSSTSR----NYYNKDIANAHANPALVGRRPNGQPSSXXXXXXXXXXXXXXXXXXXXXXXXKARSSTEPGWAGADRAAGWGRG 363
BLAST of mRNA_L-elsbetiae_contig688.15637.1 vs. uniprot
Match: D8LIN2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIN2_ECTSI) HSP 1 Score: 134 bits (336), Expect = 4.330e-35 Identity = 87/142 (61.27%), Postives = 103/142 (72.54%), Query Frame = 1
Query: 1 QSLQPLAVVKICLRRLGLAHTGVEGEAEVEVGGSDQLRRLVGQVVGHKRITAVLEELQDRVTLRRREKLAESEGRSLPGQGQGRAARSKGKAKKAAAAESHWQQVGXXXXXXXXXXXXXXPAAAGSVGSAFVSLSGESPGDE 426
+SLQPL+VVKICLRRLGLAHTGV+GEAEVEV G +L+RLVGQVV H+R+ V++ELQ+RVT+RRREKLAESEGRSLPGQG+ A R +GK K A+ +Q G XXXXX FVSLSGESP D+
Sbjct: 41 KSLQPLSVVKICLRRLGLAHTGVQGEAEVEVEGGAELQRLVGQVVDHRRVAVVMDELQERVTMRRREKLAESEGRSLPGQGKA-ARRKEGKGNKKNPADIDGRQGGARKNGAARAXXXXXXXXXX-----FVSLSGESPSDD 176
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | other localisation |
Exons | 4 |
Model size | 676 |
Cds size | 675 |
Stop | 0 |
Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622816761.273385-CDS-L-elsbetiae_contig688:29460..29639 | 1622816761.273385-CDS-L-elsbetiae_contig688:29460..29639 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig688 29461..29639 + |
1691683793.5364785-CDS-L-elsbetiae_contig688:29460..29639 | 1691683793.5364785-CDS-L-elsbetiae_contig688:29460..29639 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig688 29461..29639 + |
1622816761.2851963-CDS-L-elsbetiae_contig688:30308..30441 | 1622816761.2851963-CDS-L-elsbetiae_contig688:30308..30441 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig688 30309..30441 + |
1691683793.5459282-CDS-L-elsbetiae_contig688:30308..30441 | 1691683793.5459282-CDS-L-elsbetiae_contig688:30308..30441 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig688 30309..30441 + |
1622816761.2957716-CDS-L-elsbetiae_contig688:30896..31042 | 1622816761.2957716-CDS-L-elsbetiae_contig688:30896..31042 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig688 30897..31042 + |
1691683793.5549312-CDS-L-elsbetiae_contig688:30896..31042 | 1691683793.5549312-CDS-L-elsbetiae_contig688:30896..31042 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig688 30897..31042 + |
1622816761.3073273-CDS-L-elsbetiae_contig688:32436..32653 | 1622816761.3073273-CDS-L-elsbetiae_contig688:32436..32653 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig688 32437..32653 + |
1691683793.5638223-CDS-L-elsbetiae_contig688:32436..32653 | 1691683793.5638223-CDS-L-elsbetiae_contig688:32436..32653 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig688 32437..32653 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig688.15637.1 >prot_L-elsbetiae_contig688.15637.1 ID=prot_L-elsbetiae_contig688.15637.1|Name=mRNA_L-elsbetiae_contig688.15637.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=225bp
QSLQPLAVVKICLRRLGLAHTGVEGEAEVEVGGSDQLRRLVGQVVGHKRI TAVLEELQDRVTLRRREKLAESEGRSLPGQGQGRAARSKGKAKKAAAAES HWQQVGGGGKTRSDSSRRAPPAAAGSVGSAFVSLSGESPGDEEPSRSARA AVGNYYNKDIANANASPRPKRWKPDPPAAGKTSKTSTTSSRVNSSVGDRA SSEPGWAGADRAAGWGRGGGRSKNG back to topmRNA from alignment at L-elsbetiae_contig688:29461..32654+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig688.15637.1 ID=mRNA_L-elsbetiae_contig688.15637.1|Name=mRNA_L-elsbetiae_contig688.15637.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3194bp|location=Sequence derived from alignment at L-elsbetiae_contig688:29461..32654+ (Laminarionema elsbetiae ELsaHSoW15) CAGAGCTTGCAACCCCTGGCGGTAGTGAAGATATGTCTCCGACGGCTGGG
GCTGGCGCACACGGGCGTAGAGGGCGAGGCGGAGGTGGAGGTGGGAGGGA
GCGACCAGCTGCGGAGGCTGGTCGGACAGGTGGTCGGTCACAAGCGCATC
ACCGCGGTCTTGGAGGAGCTCCAGGACAGGTGAGCAGGATGTAGGTGTCG
GCGCGAAAGGTGTGCTGGTGCAGGGAAGATAGGCAGGCGGATGGGCAGTG
GTTGGGCTGACTGGGTAGGGCTGTCTTCGGGTTGTCTTTTGTCTCTTTTT
TTTTTTTTTTCCGGAGGAGCTGAGGGCTGAAAGTATTGGCTTGCGCGTTG
GGCCTCGTGTCTCGTGGGCCTGCCTTGCCGTAGCGAATCTCCGACCTTTA
CTTTTATAATTTACCTTTTGTGCTTTTTTGGCGACCACAGGCGTGTTTTT
GGTTGGCAGGCTGTCTTTTTTGTTTTTTTGGCGTGGGTGGACGGTGCTGC
GTTCGTGTCGGTATTTCGGTGTGTTGGGCTTGTGCCCGCCGTTTTGGGCC
AGGCTCGGTGGGGTATCGCTGTGTTCTGCTTATCGTGCTCGATCTCGATC
CCGCCGCGTGTTGCTCCGTTTCGATCCATCACCGAAAGCGTAGGTACCAC
GAGCTAACAGAGGTGATGATACACTGGGTTCCCCTGTTCCGTAGAACCGA
CGATGCCTGTCCTCTTGCAGCATTTGTTTCAGGTTCGCTCGCGTTACAGC
AAGCAGTAGAGGATCAAAGACCTGAGTAAGTCGAGGGCTGAAGGGATGAA
TAAACGTTTTTTTTTATGGCATTTCTTTGATTCCACCTCGCCGCTCAGAG
TGACGCTGAGGAGGAGGGAAAAGCTGGCCGAGTCGGAAGGCCGCTCCTTG
CCGGGCCAGGGCCAGGGCCGAGCCGCGAGGAGCAAAGGAAAGGCCAAAAA
AGCGGCTGCCGCGGAAAGCCATTGGCAGCAGGTGAGACACGAGAGAGAGA
GATAAGAGAGAGAGAGAGGGTTGTAGGACGAGACAATTGCCCGCCTGTCA
AGCAACAGCGGTGGCAGGGACGGCGGCGGCATGCATGGCGTGCCGTGTTG
GCCTCAGCAGGTCATTTGCCCGGAGTCTTGACGCATCAGTCAGGGCCTGG
TCGATTTGTTGAGTGTTGTTGTTTTTACCGTCCCCTTGCCTCGTGAGCCC
GGATGTTTTTGTTTGCCGTTTCGGGCTGCTCGTAGTTGTTCGCGCGCGCG
CGCGTTGCGCTGGAGTTTTTTTTTATTTTATATTTAGGGCCGTTTTCGCT
TTATTATTATGTTGTTCTGCCCCTTTCCCTGCGTTGTGTTTCCTTCACTC
ACCTCTCACAACCGCGCGTGCGTGATGGGGGTCGTGTGTTTGTACCGCTC
TTGTCTTCATCGTGTCCACCATGCCGGGCTGCGCAGGTTGGCGGGGGGGG
GAAGACCAGGTCGGACTCGTCACGCCGAGCGCCGCCCGCCGCCGCGGGCT
CCGTCGGCTCGGCGTTCGTGTCCCTATCGGGAGAGTCGCCGGGCGACGAG
GAGCCAAGCAGGTCTGCGCGTGCAGCGGTAGGGTAGGGGCCGCGGCCAGC
GATGATTTCGCTCAGCGCCACGTTTGTAGGCCAGCGTTTTTGTTTGTTTG
TTTGTTTGTTTGCACGGCCTCTTTGGGTGCGGGGCCCCCAGGAAGAGTGG
TGCCCCCGTGACACAAGCAAAAATAATGTTAGTTCGGAGCGGCGACGTGT
CCAGGATGACAAGATACCTCTGTAGAGCCGACTCGCTGTCCGCGCTAGGT
GGATGGACACACGCTTCTCCCGGGGTTTGCGTCTCCAGCGACTGCGAAGC
TGGTGGTACTGGCTGTGTTCTGCGGGTGATCCCACAGCAAAACCCCCTTG
CAGCGTGACCGGCATGAGGCATCGAGCTTGTACGATTTAGCGTGCTTTAT
GTCTGCATTGGTTTCAAGTGTCTGGTTCCCCGGATGCGGCTGCTGCCGCC
AGCCCCGCCGTGGCTGTCCTGCTGCGGAGGTATTCGGGAGCGCAGCTCCT
TGTTTGTTTTTGACTCTTGGGCGCGTAGCCGGCGAAACGCTTGTAGATAT
TTTGTGCGCTGAAGGGATTTGGGGGGTCTCCTTCTGGTCGGTGAGAGGTT
GGAACAGTCTTTTTCCCGTCCGCCCCAAAAAAGACGGCCTGGCCGGGGCT
GCAGTCCTGTTCTTCTGTTATTTTTAGTTGCATGTTGTTGTTGTTGTTGT
TGTTGTTGTTGTTGCTTCTCACAATAGCTCTCTAGTCCAAAACATCCTTG
GGGGCCCGTGGTCACAAAACAAGGCACACTCGACGCCGCGGAAGAAAAAA
TAAAACAAATAAAATACGGTACATCCGCGCCCGGCGGTACTAAACTGGAC
CCCCGAGGGGTCTTTGCGTCTCGCCAACACAAAATCAGAGGTATACTGTA
GTACACACTACAATACTCGTGTACCCCACTCAGCTCGTGCTTGTTCGGTA
GTCTACGCAGGTTTTTCAGTCAGCAAGACATATGGAAATCAGAGGAACGG
GGGGGGGGTTCGTGGTTAGGGTTAGGGTTAGGGTTACGGAACCCCCTAAC
TCTATTTGACATACATATGAACCTGAATTTGACGATTTTCTGCGTGTAGG
CGGTCCTGCTTGTTCTTATGTTTTCCCTCAGCCTTGCGAATATGGAAGAG
TCAGGAGCCCGTCTGCTCTGGAGCGCCGCTTTTTCTACTAGCGAGGCATG
CTCCGATGAGTTGAAAAGTTCGCATGTTGCTGGGGGCTTGTTGGAAAAGT
GTTCGCACTATGACAGCAGTGCGGTCCACCTGTTCCGTGCTTTTGTGTCT
ACGCATTTAAATTAGCAAATCAATTGCGTTTTTACAAGGACGTCCGCGGT
GGGTGTGTCTGCACATTTACGAAACCCCCTACCCCCCCCGGACCTCGCCC
CTGCAACGACCACGTTGCCCCCGCAGAAACTACTACAACAAGGACATCGC
CAACGCCAACGCTAGCCCGAGGCCCAAAAGATGGAAGCCCGACCCACCGG
CGGCCGGCAAGACCAGCAAAACCAGCACAACCAGCAGCAGGGTCAACAGC
AGCGTTGGCGACAGGGCGAGCAGCGAACCCGGCTGGGCGGGAGCTGACCG
CGCCGCAGGCTGGGGTCGCGGCGGTGGGCGCTCCAAAAACGGAG back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig688:29461..32654+ >mRNA_L-elsbetiae_contig688.15637.1 ID=mRNA_L-elsbetiae_contig688.15637.1|Name=mRNA_L-elsbetiae_contig688.15637.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1350bp|location=Sequence derived from alignment at L-elsbetiae_contig688:29461..32654+ (Laminarionema elsbetiae ELsaHSoW15) CAGAGCTTGCAACCCCTGGCGGTAGTGAAGATATGTCTCCGACGGCTGGG GCTGGCGCACACGGGCGTAGAGGGCGAGGCGGAGGTGGAGGTGGGAGGGA GCGACCAGCTGCGGAGGCTGGTCGGACAGGTGGTCGGTCACAAGCGCATC ACCGCGGTCTTGGAGGAGCTCCAGGACAGCAGAGCTTGCAACCCCTGGCG GTAGTGAAGATATGTCTCCGACGGCTGGGGCTGGCGCACACGGGCGTAGA GGGCGAGGCGGAGGTGGAGGTGGGAGGGAGCGACCAGCTGCGGAGGCTGG TCGGACAGGTGGTCGGTCACAAGCGCATCACCGCGGTCTTGGAGGAGCTC CAGGACAGAGTGACGCTGAGGAGGAGGGAAAAGCTGGCCGAGTCGGAAGG CCGCTCCTTGCCGGGCCAGGGCCAGGGCCGAGCCGCGAGGAGCAAAGGAA AGGCCAAAAAAGCGGCTGCCGCGGAAAGCCATTGGCAGCAGAGTGACGCT GAGGAGGAGGGAAAAGCTGGCCGAGTCGGAAGGCCGCTCCTTGCCGGGCC AGGGCCAGGGCCGAGCCGCGAGGAGCAAAGGAAAGGCCAAAAAAGCGGCT GCCGCGGAAAGCCATTGGCAGCAGGTTGGCGGGGGGGGGAAGACCAGGTC GGACTCGTCACGCCGAGCGCCGCCCGCCGCCGCGGGCTCCGTCGGCTCGG CGTTCGTGTCCCTATCGGGAGAGTCGCCGGGCGACGAGGAGCCAAGCAGG TCTGCGCGTGCAGCGGTAGGGTTGGCGGGGGGGGGAAGACCAGGTCGGAC TCGTCACGCCGAGCGCCGCCCGCCGCCGCGGGCTCCGTCGGCTCGGCGTT CGTGTCCCTATCGGGAGAGTCGCCGGGCGACGAGGAGCCAAGCAGGTCTG CGCGTGCAGCGGTAGGAAACTACTACAACAAGGACATCGCCAACGCCAAC GCTAGCCCGAGGCCCAAAAGATGGAAGCCCGACCCACCGGCGGCCGGCAA GACCAGCAAAACCAGCACAACCAGCAGCAGGGTCAACAGCAGCGTTGGCG ACAGGGCGAGCAGCGAACCCGGCTGGGCGGGAGCTGACCGCGCCGCAGGC TGGGGTCGCGGCGGTGGGCGCTCCAAAAACGGAAAACTACTACAACAAGG ACATCGCCAACGCCAACGCTAGCCCGAGGCCCAAAAGATGGAAGCCCGAC CCACCGGCGGCCGGCAAGACCAGCAAAACCAGCACAACCAGCAGCAGGGT CAACAGCAGCGTTGGCGACAGGGCGAGCAGCGAACCCGGCTGGGCGGGAG CTGACCGCGCCGCAGGCTGGGGTCGCGGCGGTGGGCGCTCCAAAAACGGA back to top
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