mRNA_L-elsbetiae_contig688.15637.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig688.15637.1
Unique NamemRNA_L-elsbetiae_contig688.15637.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig688.15637.1 vs. uniprot
Match: A0A6H5K792_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K792_9PHAE)

HSP 1 Score: 183 bits (465), Expect = 8.060e-52
Identity = 124/229 (54.15%), Postives = 149/229 (65.07%), Query Frame = 1 
Query:    1 QSLQPLAVVKICLRRLGLAHTGVEGEAEVEVGGSDQLRRLVGQVVGHKRITAVLEELQDRVTLRRREKLAESEGRSLPGQGQGRAARSKGKAKKAAAAESHWQQVGXXXXXXXXXXXXXXPAAAGSVGSAFVSLSGESPGDEE---PSRSARAAVGNYYNKDIANANASPRPKRWKPDPPAAGKTSKTSTTSSRVNSSVGD--------RASSEPGWAGADRAAGWGRG 654
            +SLQPL+VVKICLRRLGLAHTGV+GEAEVEV G  +L+RLVG+VV HKR+  V+EELQ+RVT+RRREKLAESEGRSLPGQG+G A   +GK  K   A+ H +Q G               AAA + GSAFVSLSGESP D+    PS ++R    NYYNKDIANA+A+P     +P+   +                           R+S+EPGWAGADRAAGWGRG
Sbjct:  144 KSLQPLSVVKICLRRLGLAHTGVQGEAEVEVEGGAELQRLVGKVVEHKRVAVVMEELQERVTMRRREKLAESEGRSLPGQGRG-ATGKQGKGNKKTPAKIHERQGGARKSGVARAAA----AAATTAGSAFVSLSGESPSDDHDAGPSSTSR----NYYNKDIANAHANPALVGRRPNGQPSSXXXXXXXXXXXXXXXXXXXXXXXXKARSSTEPGWAGADRAAGWGRG 363
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BLAST of mRNA_L-elsbetiae_contig688.15637.1 vs. uniprot
Match: D8LIN2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIN2_ECTSI)

HSP 1 Score: 134 bits (336), Expect = 4.330e-35
Identity = 87/142 (61.27%), Postives = 103/142 (72.54%), Query Frame = 1 
Query:    1 QSLQPLAVVKICLRRLGLAHTGVEGEAEVEVGGSDQLRRLVGQVVGHKRITAVLEELQDRVTLRRREKLAESEGRSLPGQGQGRAARSKGKAKKAAAAESHWQQVGXXXXXXXXXXXXXXPAAAGSVGSAFVSLSGESPGDE 426
            +SLQPL+VVKICLRRLGLAHTGV+GEAEVEV G  +L+RLVGQVV H+R+  V++ELQ+RVT+RRREKLAESEGRSLPGQG+  A R +GK  K   A+   +Q G         XXXXX          FVSLSGESP D+
Sbjct:   41 KSLQPLSVVKICLRRLGLAHTGVQGEAEVEVEGGAELQRLVGQVVDHRRVAVVMDELQERVTMRRREKLAESEGRSLPGQGKA-ARRKEGKGNKKNPADIDGRQGGARKNGAARAXXXXXXXXXX-----FVSLSGESPSDD 176
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig688.15637.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K792_9PHAE8.060e-5254.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LIN2_ECTSI4.330e-3561.27Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig688contigL-elsbetiae_contig688:29461..32654 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size676
Cds size675
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig688.15637.1prot_L-elsbetiae_contig688.15637.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig688 29461..32653 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816761.273385-CDS-L-elsbetiae_contig688:29460..296391622816761.273385-CDS-L-elsbetiae_contig688:29460..29639Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig688 29461..29639 +
1691683793.5364785-CDS-L-elsbetiae_contig688:29460..296391691683793.5364785-CDS-L-elsbetiae_contig688:29460..29639Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig688 29461..29639 +
1622816761.2851963-CDS-L-elsbetiae_contig688:30308..304411622816761.2851963-CDS-L-elsbetiae_contig688:30308..30441Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig688 30309..30441 +
1691683793.5459282-CDS-L-elsbetiae_contig688:30308..304411691683793.5459282-CDS-L-elsbetiae_contig688:30308..30441Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig688 30309..30441 +
1622816761.2957716-CDS-L-elsbetiae_contig688:30896..310421622816761.2957716-CDS-L-elsbetiae_contig688:30896..31042Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig688 30897..31042 +
1691683793.5549312-CDS-L-elsbetiae_contig688:30896..310421691683793.5549312-CDS-L-elsbetiae_contig688:30896..31042Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig688 30897..31042 +
1622816761.3073273-CDS-L-elsbetiae_contig688:32436..326531622816761.3073273-CDS-L-elsbetiae_contig688:32436..32653Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig688 32437..32653 +
1691683793.5638223-CDS-L-elsbetiae_contig688:32436..326531691683793.5638223-CDS-L-elsbetiae_contig688:32436..32653Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig688 32437..32653 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig688.15637.1

>prot_L-elsbetiae_contig688.15637.1 ID=prot_L-elsbetiae_contig688.15637.1|Name=mRNA_L-elsbetiae_contig688.15637.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=225bp
QSLQPLAVVKICLRRLGLAHTGVEGEAEVEVGGSDQLRRLVGQVVGHKRI
TAVLEELQDRVTLRRREKLAESEGRSLPGQGQGRAARSKGKAKKAAAAES
HWQQVGGGGKTRSDSSRRAPPAAAGSVGSAFVSLSGESPGDEEPSRSARA
AVGNYYNKDIANANASPRPKRWKPDPPAAGKTSKTSTTSSRVNSSVGDRA
SSEPGWAGADRAAGWGRGGGRSKNG
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mRNA from alignment at L-elsbetiae_contig688:29461..32654+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig688.15637.1 ID=mRNA_L-elsbetiae_contig688.15637.1|Name=mRNA_L-elsbetiae_contig688.15637.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3194bp|location=Sequence derived from alignment at L-elsbetiae_contig688:29461..32654+ (Laminarionema elsbetiae ELsaHSoW15)
CAGAGCTTGCAACCCCTGGCGGTAGTGAAGATATGTCTCCGACGGCTGGG
GCTGGCGCACACGGGCGTAGAGGGCGAGGCGGAGGTGGAGGTGGGAGGGA
GCGACCAGCTGCGGAGGCTGGTCGGACAGGTGGTCGGTCACAAGCGCATC
ACCGCGGTCTTGGAGGAGCTCCAGGACAGGTGAGCAGGATGTAGGTGTCG
GCGCGAAAGGTGTGCTGGTGCAGGGAAGATAGGCAGGCGGATGGGCAGTG
GTTGGGCTGACTGGGTAGGGCTGTCTTCGGGTTGTCTTTTGTCTCTTTTT
TTTTTTTTTTCCGGAGGAGCTGAGGGCTGAAAGTATTGGCTTGCGCGTTG
GGCCTCGTGTCTCGTGGGCCTGCCTTGCCGTAGCGAATCTCCGACCTTTA
CTTTTATAATTTACCTTTTGTGCTTTTTTGGCGACCACAGGCGTGTTTTT
GGTTGGCAGGCTGTCTTTTTTGTTTTTTTGGCGTGGGTGGACGGTGCTGC
GTTCGTGTCGGTATTTCGGTGTGTTGGGCTTGTGCCCGCCGTTTTGGGCC
AGGCTCGGTGGGGTATCGCTGTGTTCTGCTTATCGTGCTCGATCTCGATC
CCGCCGCGTGTTGCTCCGTTTCGATCCATCACCGAAAGCGTAGGTACCAC
GAGCTAACAGAGGTGATGATACACTGGGTTCCCCTGTTCCGTAGAACCGA
CGATGCCTGTCCTCTTGCAGCATTTGTTTCAGGTTCGCTCGCGTTACAGC
AAGCAGTAGAGGATCAAAGACCTGAGTAAGTCGAGGGCTGAAGGGATGAA
TAAACGTTTTTTTTTATGGCATTTCTTTGATTCCACCTCGCCGCTCAGAG
TGACGCTGAGGAGGAGGGAAAAGCTGGCCGAGTCGGAAGGCCGCTCCTTG
CCGGGCCAGGGCCAGGGCCGAGCCGCGAGGAGCAAAGGAAAGGCCAAAAA
AGCGGCTGCCGCGGAAAGCCATTGGCAGCAGGTGAGACACGAGAGAGAGA
GATAAGAGAGAGAGAGAGGGTTGTAGGACGAGACAATTGCCCGCCTGTCA
AGCAACAGCGGTGGCAGGGACGGCGGCGGCATGCATGGCGTGCCGTGTTG
GCCTCAGCAGGTCATTTGCCCGGAGTCTTGACGCATCAGTCAGGGCCTGG
TCGATTTGTTGAGTGTTGTTGTTTTTACCGTCCCCTTGCCTCGTGAGCCC
GGATGTTTTTGTTTGCCGTTTCGGGCTGCTCGTAGTTGTTCGCGCGCGCG
CGCGTTGCGCTGGAGTTTTTTTTTATTTTATATTTAGGGCCGTTTTCGCT
TTATTATTATGTTGTTCTGCCCCTTTCCCTGCGTTGTGTTTCCTTCACTC
ACCTCTCACAACCGCGCGTGCGTGATGGGGGTCGTGTGTTTGTACCGCTC
TTGTCTTCATCGTGTCCACCATGCCGGGCTGCGCAGGTTGGCGGGGGGGG
GAAGACCAGGTCGGACTCGTCACGCCGAGCGCCGCCCGCCGCCGCGGGCT
CCGTCGGCTCGGCGTTCGTGTCCCTATCGGGAGAGTCGCCGGGCGACGAG
GAGCCAAGCAGGTCTGCGCGTGCAGCGGTAGGGTAGGGGCCGCGGCCAGC
GATGATTTCGCTCAGCGCCACGTTTGTAGGCCAGCGTTTTTGTTTGTTTG
TTTGTTTGTTTGCACGGCCTCTTTGGGTGCGGGGCCCCCAGGAAGAGTGG
TGCCCCCGTGACACAAGCAAAAATAATGTTAGTTCGGAGCGGCGACGTGT
CCAGGATGACAAGATACCTCTGTAGAGCCGACTCGCTGTCCGCGCTAGGT
GGATGGACACACGCTTCTCCCGGGGTTTGCGTCTCCAGCGACTGCGAAGC
TGGTGGTACTGGCTGTGTTCTGCGGGTGATCCCACAGCAAAACCCCCTTG
CAGCGTGACCGGCATGAGGCATCGAGCTTGTACGATTTAGCGTGCTTTAT
GTCTGCATTGGTTTCAAGTGTCTGGTTCCCCGGATGCGGCTGCTGCCGCC
AGCCCCGCCGTGGCTGTCCTGCTGCGGAGGTATTCGGGAGCGCAGCTCCT
TGTTTGTTTTTGACTCTTGGGCGCGTAGCCGGCGAAACGCTTGTAGATAT
TTTGTGCGCTGAAGGGATTTGGGGGGTCTCCTTCTGGTCGGTGAGAGGTT
GGAACAGTCTTTTTCCCGTCCGCCCCAAAAAAGACGGCCTGGCCGGGGCT
GCAGTCCTGTTCTTCTGTTATTTTTAGTTGCATGTTGTTGTTGTTGTTGT
TGTTGTTGTTGTTGCTTCTCACAATAGCTCTCTAGTCCAAAACATCCTTG
GGGGCCCGTGGTCACAAAACAAGGCACACTCGACGCCGCGGAAGAAAAAA
TAAAACAAATAAAATACGGTACATCCGCGCCCGGCGGTACTAAACTGGAC
CCCCGAGGGGTCTTTGCGTCTCGCCAACACAAAATCAGAGGTATACTGTA
GTACACACTACAATACTCGTGTACCCCACTCAGCTCGTGCTTGTTCGGTA
GTCTACGCAGGTTTTTCAGTCAGCAAGACATATGGAAATCAGAGGAACGG
GGGGGGGGTTCGTGGTTAGGGTTAGGGTTAGGGTTACGGAACCCCCTAAC
TCTATTTGACATACATATGAACCTGAATTTGACGATTTTCTGCGTGTAGG
CGGTCCTGCTTGTTCTTATGTTTTCCCTCAGCCTTGCGAATATGGAAGAG
TCAGGAGCCCGTCTGCTCTGGAGCGCCGCTTTTTCTACTAGCGAGGCATG
CTCCGATGAGTTGAAAAGTTCGCATGTTGCTGGGGGCTTGTTGGAAAAGT
GTTCGCACTATGACAGCAGTGCGGTCCACCTGTTCCGTGCTTTTGTGTCT
ACGCATTTAAATTAGCAAATCAATTGCGTTTTTACAAGGACGTCCGCGGT
GGGTGTGTCTGCACATTTACGAAACCCCCTACCCCCCCCGGACCTCGCCC
CTGCAACGACCACGTTGCCCCCGCAGAAACTACTACAACAAGGACATCGC
CAACGCCAACGCTAGCCCGAGGCCCAAAAGATGGAAGCCCGACCCACCGG
CGGCCGGCAAGACCAGCAAAACCAGCACAACCAGCAGCAGGGTCAACAGC
AGCGTTGGCGACAGGGCGAGCAGCGAACCCGGCTGGGCGGGAGCTGACCG
CGCCGCAGGCTGGGGTCGCGGCGGTGGGCGCTCCAAAAACGGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig688:29461..32654+

>mRNA_L-elsbetiae_contig688.15637.1 ID=mRNA_L-elsbetiae_contig688.15637.1|Name=mRNA_L-elsbetiae_contig688.15637.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1350bp|location=Sequence derived from alignment at L-elsbetiae_contig688:29461..32654+ (Laminarionema elsbetiae ELsaHSoW15)
CAGAGCTTGCAACCCCTGGCGGTAGTGAAGATATGTCTCCGACGGCTGGG
GCTGGCGCACACGGGCGTAGAGGGCGAGGCGGAGGTGGAGGTGGGAGGGA
GCGACCAGCTGCGGAGGCTGGTCGGACAGGTGGTCGGTCACAAGCGCATC
ACCGCGGTCTTGGAGGAGCTCCAGGACAGCAGAGCTTGCAACCCCTGGCG
GTAGTGAAGATATGTCTCCGACGGCTGGGGCTGGCGCACACGGGCGTAGA
GGGCGAGGCGGAGGTGGAGGTGGGAGGGAGCGACCAGCTGCGGAGGCTGG
TCGGACAGGTGGTCGGTCACAAGCGCATCACCGCGGTCTTGGAGGAGCTC
CAGGACAGAGTGACGCTGAGGAGGAGGGAAAAGCTGGCCGAGTCGGAAGG
CCGCTCCTTGCCGGGCCAGGGCCAGGGCCGAGCCGCGAGGAGCAAAGGAA
AGGCCAAAAAAGCGGCTGCCGCGGAAAGCCATTGGCAGCAGAGTGACGCT
GAGGAGGAGGGAAAAGCTGGCCGAGTCGGAAGGCCGCTCCTTGCCGGGCC
AGGGCCAGGGCCGAGCCGCGAGGAGCAAAGGAAAGGCCAAAAAAGCGGCT
GCCGCGGAAAGCCATTGGCAGCAGGTTGGCGGGGGGGGGAAGACCAGGTC
GGACTCGTCACGCCGAGCGCCGCCCGCCGCCGCGGGCTCCGTCGGCTCGG
CGTTCGTGTCCCTATCGGGAGAGTCGCCGGGCGACGAGGAGCCAAGCAGG
TCTGCGCGTGCAGCGGTAGGGTTGGCGGGGGGGGGAAGACCAGGTCGGAC
TCGTCACGCCGAGCGCCGCCCGCCGCCGCGGGCTCCGTCGGCTCGGCGTT
CGTGTCCCTATCGGGAGAGTCGCCGGGCGACGAGGAGCCAAGCAGGTCTG
CGCGTGCAGCGGTAGGAAACTACTACAACAAGGACATCGCCAACGCCAAC
GCTAGCCCGAGGCCCAAAAGATGGAAGCCCGACCCACCGGCGGCCGGCAA
GACCAGCAAAACCAGCACAACCAGCAGCAGGGTCAACAGCAGCGTTGGCG
ACAGGGCGAGCAGCGAACCCGGCTGGGCGGGAGCTGACCGCGCCGCAGGC
TGGGGTCGCGGCGGTGGGCGCTCCAAAAACGGAAAACTACTACAACAAGG
ACATCGCCAACGCCAACGCTAGCCCGAGGCCCAAAAGATGGAAGCCCGAC
CCACCGGCGGCCGGCAAGACCAGCAAAACCAGCACAACCAGCAGCAGGGT
CAACAGCAGCGTTGGCGACAGGGCGAGCAGCGAACCCGGCTGGGCGGGAG
CTGACCGCGCCGCAGGCTGGGGTCGCGGCGGTGGGCGCTCCAAAAACGGA
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